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Publications from BDC users and staff
Publications prior to 2013 are projects run as part of the Genomics Core Facility, while most publications between 2013 and 2022 are from projects run as the Bioinformatics Core Facility. Recent publications are from projects run by the current Bioinformatics and Data Centre experts.
Almobarak, B., V. Amlani, L. Inge, T. Hofving, A. Muth, O. Nilsson, M. Johansson, Y. Arvidsson and E. Elias (2023). "Exposure to nonanoic acid alters small intestinal neuroendocrine tumor phenotype." BMC Cancer 23(1): 267.
Andersson, B., B. Langen, P. Liu and M. Davila Lopez (2023). "Development of a machine learning framework for radiation biomarker discovery and absorbed dose prediction." Front Oncol 13: 1156009.
Aranburu, A., E. Engstrom, N. Gerasimcik, S. Alsen, A. Camponeschi, U. Yrlid, O. Grimsholm and I. L. Martensson (2023). "Clonal relationships of memory B cell subsets in autoimmune mice." Front Immunol 14: 1129234.
Bygdell, M., J. M. Kindblom, J. Martikainen, H. Li and F. Nyberg (2023). "Incidence and Characteristics in Children with Post-COVID-19 Condition in Sweden." JAMA Netw Open 6(7): e2324246.
Bygdell, M., S. Leach, L. Lundberg, D. Gyll, J. Martikainen, A. Santosa, H. Li, M. Gisslen and F. Nyberg (2023). "A comprehensive characterization of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the International Classification of Diseases Tenth Revision diagnosis code (U09.9): a population-based cohort study." Int J Infect Dis 126: 104-113.
Deshmukh, M., S. Subhash, Z. Hu, M. Mohammad, A. Jarneborn, R. Pullerits, T. Jin and P. K. Kopparapu (2023). "Gene expression of S100a8/a9 predicts Staphylococcus aureus-induced septic arthritis in mice." Front Microbiol 14: 1146694.
Devarakonda, S., A. Thorsell, P. Hedenstrom, A. Rezapour, L. Heden, S. Banerjee, M. E. V. Johansson, G. Birchenough, A. Toft Moren, K. Gustavsson, V. Skokic, V. L. Pettersson, F. Sjoberg, M. Kalm, M. Al Masri, M. Ekh, H. Fagman, M. Wolving, R. Perkins, R. A. Morales, F. Castillo, E. J. Villablanca, U. Yrlid, K. Bergmark, G. Steineck and C. Bull (2023). "Low-grade intestinal inflammation two decades after pelvic radiotherapy." EBioMedicine 94: 104691.
Doimo, M., N. Chaudhari, S. Abrahamsson, V. L'Hote, T. V. H. Nguyen, A. Berner, M. Ndi, A. Abrahamsson, R. N. Das, K. Aasumets, S. Goffart, J. L. O. Pohjoismaki, M. D. Lopez, E. Chorell and S. Wanrooij (2023). "Enhanced mitochondrial G-quadruplex formation impedes replication fork progression leading to mtDNA loss in human cells." Nucleic Acids Res 51(14): 7392-7408.
Dorvall, M., A. Pedersen, J. P. Dumanski, M. Soderholm, A. G. Lindgren, T. M. Stanne and C. Jern (2023). "Mosaic Loss of Chromosome Y Is Associated With Functional Outcome After Ischemic Stroke." Stroke 54(9): 2434-2437.
Dutta, N., A. Rohlin, E. A. Eklund, M. K. Magnusson, F. Nilsson, L. M. Akyurek, P. Torstensson, V. I. Sayin, A. Lundgren, A. Hallqvist and S. Raghavan (2022). "Combinatory analysis of immune cell subsets and tumor-specific genetic variants predict clinical response to PD-1 blockade in patients with non-small cell lung cancer." Front Oncol 12: 1073457.
Edsjö, A., Lindstrand, A., Gisselsson, D., Mölling, P., Friedman, M., Cavelier, L., Johansson, M., Ehrencrona H., Fagerqvist T., Strid T., Lovmar L., Jacobsson B., Johansson Å., Engstrand L., Wheelock C., Sikora P., Wirta V., Fioretos T., Rosenquist R. and Genomic Medicine Sweden (GMS) (2023). "Building a precision medicine infrastructure at a national level: The Swedish experience." Cambridge Prisms: Precision Medicine(1).
Grahnemo, L., A. L. Eriksson, M. Nethander, R. Johansson, M. Lorentzon, D. Mellstrom, U. Pettersson-Kymmer and C. Ohlsson (2023). "Low Circulating Valine Associate With High Risk of Hip Fractures." J Clin Endocrinol Metab 108(11): e1384-e1393.
Grahnemo, L., M. Nethander, E. Coward, M. E. Gabrielsen, S. Sree, J. M. Billod, K. Sjogren, L. Engstrand, K. F. Dekkers, T. Fall, A. Langhammer, K. Hveem and C. Ohlsson (2023). "Identification of three bacterial species associated with increased appendicular lean mass: the HUNT study." Nat Commun 14(1): 2250.
Gravina, G., M. Ardalan, T. Chumak, H. Rydbeck, X. Wang, C. J. Ek and C. Mallard (2023). "Transcriptome network analysis links perinatal Staphylococcus epidermidis infection to microglia reprogramming in the immature hippocampus." Glia 71(9): 2234-2249.
Guo, A., M. Ostensson, K. Stordal, J. Ludvigsson and K. Marild (2023). "Early-Life Hygiene-Related Factors and Risk of Inflammatory Bowel Disease: A Scandinavian Birth Cohort Study." Inflamm Bowel Dis.
Hedberg-Oldfors, C., S. Mitra, A. Molinaro, K. Visuttijai, L. Fogelstrand, A. Oldfors, F. H. Sterky and N. Darin (2023). "Ribonuclease inhibitor 1 (RNH1) deficiency cause congenital cataracts and global developmental delay with infection-induced psychomotor regression and anemia." Eur J Hum Genet 31(8): 887-894.
Kha, M., K. Krawczyk, O. K. Choong, F. De Luca, G. Altiparmak, E. Kallberg, H. Nilsson, K. Leandersson, K. Sward and M. E. Johansson (2023). "The injury-induced transcription factor SOX9 alters the expression of LBR, HMGA2, and HIPK3 in the human kidney." Am J Physiol Renal Physiol 324(1): F75-F90.
Kimland, E. E., E. Dahlen, J. Martikainen, J. Celind and J. M. Kindblom (2023). "Melatonin Prescription in Children and Adolescents in Relation to Body Weight and Age." Pharmaceuticals (Basel) 16(3).
Lawenius, L., C. Cowardin, L. Grahnemo, J. M. Scheffler, K. Horkeby, C. Engdahl, J. Wu, L. Vandenput, A. Koskela, J. Tuukkanen, E. Coward, K. Hveem, A. Langhammer, S. Abrahamsson, J. I. Gordon, K. Sjogren and C. Ohlsson (2023). "Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass." Gut Microbes 15(1): 2236755.
Lerchova, T., M. Ostensson, I. Sigvardsson, K. Stordal, A. Guo, K. Marild and J. Ludvigsson (2023). "Physical activity in childhood and later risk of inflammatory bowel disease: A Scandinavian birth cohort study." United European Gastroenterol J 11(9): 874-883.
Lilja, L., M. Bygdell, J. Martikainen, A. Rosengren, J. M. Kindblom and C. Ohlsson (2023). "Overweight in childhood and young adulthood increases the risk for adult thromboembolic events." J Intern Med 293(5): 615-623.
Lindgren, U., C. Hedberg-Oldfors, R. Pullerits, C. Lindberg and A. Oldfors (2023). "Inclusion body myositis with early onset: a population-based study." J Neurol 270(11): 5483-5492.
Lundberg-Morris, L., S. Leach, Y. Xu, J. Martikainen, A. Santosa, M. Gisslen, H. Li, F. Nyberg and M. Bygdell (2023). "Covid-19 vaccine effectiveness against post-covid-19 condition among 589 722 individuals in Sweden: population based cohort study." BMJ 383: e076990.
Medina-Gomez, C., B. H. Mullin, A. Chesi, V. Prijatelj, J. P. Kemp, C. Shochat-Carvalho, K. Trajanoska, C. Wang, R. Joro, T. E. Evans, K. E. Schraut, R. Li-Gao, T. S. Ahluwalia, M. C. Zillikens, K. Zhu, D. O. Mook-Kanamori, D. S. Evans, M. Nethander, M. J. Knol, G. Thorleifsson, I. Prokic, B. Zemel, L. Broer, F. E. McGuigan, N. M. van Schoor, S. Reppe, M. A. Pawlak, S. H. Ralston, N. van der Velde, M. Lorentzon, K. Stefansson, H. H. H. Adams, S. G. Wilson, M. A. Ikram, J. P. Walsh, T. A. Lakka, K. M. Gautvik, J. F. Wilson, E. S. Orwoll, C. M. van Duijn, K. Bonnelykke, A. G. Uitterlinden, U. Styrkarsdottir, K. E. Akesson, T. D. Spector, J. H. Tobias, C. Ohlsson, J. F. Felix, H. Bisgaard, S. F. A. Grant, J. B. Richards, D. M. Evans, B. van der Eerden, J. van de Peppel, C. Ackert-Bicknell, D. Karasik, E. Kague and F. Rivadeneira (2023). "Bone mineral density loci specific to the skull portray potential pleiotropic effects on craniosynostosis." Commun Biol 6(1): 691.
Moverare-Skrtic, S., J. Voelkl, K. H. Nilsson, M. Nethander, T. T. D. Luong, I. Alesutan, L. Li, J. Wu, K. Horkeby, M. K. Lagerquist, A. Koskela, J. Tuukkanen, J. H. Tobias, U. H. Lerner, P. Henning and C. Ohlsson (2023). "B4GALNT3 regulates glycosylation of sclerostin and bone mass." EBioMedicine 91: 104546.
Nethander, M., S. Moverare-Skrtic, A. Kampe, E. Coward, E. Reimann, L. Grahnemo, E. Borbely, Z. Helyes, T. Funck-Brentano, M. Cohen-Solal, J. Tuukkanen, A. Koskela, J. Wu, L. Li, T. Lu, M. E. Gabrielsen, T. Estonian Biobank Research, R. Magi, M. Hoff, U. H. Lerner, P. Henning, H. Ullum, C. Erikstrup, S. Brunak, D. G. Consortium, A. Langhammer, T. Tuomi, A. Oddsson, K. Stefansson, U. Pettersson-Kymmer, S. R. Ostrowski, O. B. V. Pedersen, U. Styrkarsdottir, O. Makitie, K. Hveem, J. B. Richards and C. Ohlsson (2023). "An atlas of genetic determinants of forearm fracture." Nat Genet 55(11): 1820-1830.
Nilsson, G., A. Mottahedin, A. Zelco, V. M. Lauschke, C. J. Ek, J. Song, M. Ardalan, S. Hua, X. Zhang, C. Mallard, H. Hagberg, J. W. Leavenworth and X. Wang (2023). "Two different isoforms of osteopontin modulate myelination and axonal integrity." FASEB Bioadv 5(8): 336-353.
Ohlsson, C., M. Nethander, A. K. Norlen, M. Poutanen, E. F. Gudmundsson, T. Aspelund, S. Sigurdsson, H. Ryberg, V. Gudnason and A. Tivesten (2023). "Serum DHEA and Testosterone Levels Associate Inversely With Coronary Artery Calcification in Elderly Men." J Clin Endocrinol Metab 108(12): 3272-3279.
Ostensson, M., O. Bjorkqvist, A. Guo, K. Stordal, J. Halfvarson, K. Marild and J. Ludvigsson (2023). "Epidemiology, validation, and clinical characteristics of inflammatory bowel disease: the ABIS birth cohort study." BMC Gastroenterol 23(1): 199.
Podraza-Farhanieh, A., D. Raj, G. Kao and P. Naredi (2023). "A proinsulin-dependent interaction between ENPL-1 and ASNA-1 in neurons is required to maintain insulin secretion in C. elegans." Development 150(6).
Rahman, M. S., H. Jun and J. Xing (2023). "frontiers Frontiers in Immunology MINI REVIEW published: 12 April 2022." Plasticity and Metabolic Switching in Adipose Tissue Macrophages: 41.
Raj, D., B. Kraish, J. Martikainen, A. Podraza-Farhanieh, G. Kao and P. Naredi (2023). "Cisplatin toxicity is counteracted by the activation of the p38/ATF-7 signaling pathway in post-mitotic C. elegans." Nat Commun 14(1): 2886.
Rezayee, F., J. Eisfeldt, A. Skaftason, I. Ofverholm, S. Sayyab, A. C. Syvanen, K. Maqbool, H. Lilljebjorn, B. Johansson, L. Olsson-Arvidsson, C. O. Pietras, A. Staffas, L. Palmqvist, T. Fioretos, L. Cavelier, L. Fogelstrand, J. Nordlund, V. Wirta, R. Rosenquist and G. Barbany (2023). "Feasibility to use whole-genome sequencing as a sole diagnostic method to detect genomic aberrations in pediatric B-cell acute lymphoblastic leukemia." Front Oncol 13: 1217712.
Salva-Serra, F., D. Jaen-Luchoro, N. P. Marathe, I. Adlerberth, E. R. B. Moore and R. Karlsson (2022). "Responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to meropenem revealed by quantitative tandem mass spectrometry proteomics." Front Microbiol 13: 1089140.
Sandstedt, J., K. Vukusic, G. Dellgren, A. Jeppsson, L. Mattsson Hulten and V. Rotter Sopasakis (2023). "Metagenomic sequencing of human cardiac tissue reveals Microbial RNA which correlates with Toll-like receptor-associated inflammation in patients with heart disease." Sci Rep 13(1): 7884.
Sigvardsson, I., K. Stordal, M. Ostensson, A. Guo, J. Ludvigsson and K. Marild (2023). "Childhood Socioeconomic Characteristics and Risk of Inflammatory Bowel Disease: A Scandinavian Birth Cohort Study." Inflamm Bowel Dis.
Torinsson Naluai, A., M. Ostensson, P. C. Fowler, S. Abrahamsson, B. Andersson, S. Lassesson, F. Jacobsson, M. Oscarsson, A. Bohman, A. M. Harandi and M. Bende (2023). "Transcriptomics unravels molecular changes associated with cilia and COVID-19 in chronic rhinosinusitis with nasal polyps." Sci Rep 13(1): 6592.
van de Vegte, Y. J., R. N. Eppinga, M. Y. van der Ende, Y. P. Hagemeijer, Y. Mahendran, E. Salfati, A. V. Smith, V. Y. Tan, D. E. Arking, I. Ntalla, E. V. Appel, C. Schurmann, J. A. Brody, R. Rueedi, O. Polasek, G. Sveinbjornsson, C. Lecoeur, C. Ladenvall, J. H. Zhao, A. Isaacs, L. Wang, J. Luan, S. J. Hwang, N. Mononen, K. Auro, A. U. Jackson, L. F. Bielak, L. Zeng, N. Shah, M. Nethander, A. Campbell, T. Rankinen, S. Pechlivanis, L. Qi, W. Zhao, F. Rizzi, T. Tanaka, A. Robino, M. Cocca, L. Lange, M. Muller-Nurasyid, C. Roselli, W. Zhang, M. E. Kleber, X. Guo, H. J. Lin, F. Pavani, T. E. Galesloot, R. Noordam, Y. Milaneschi, K. E. Schraut, M. den Hoed, F. Degenhardt, S. Trompet, M. E. van den Berg, G. Pistis, Y. C. Tham, S. Weiss, X. S. Sim, H. L. Li, P. J. van der Most, I. M. Nolte, L. P. Lyytikainen, M. A. Said, D. R. Witte, C. Iribarren, L. Launer, S. M. Ring, P. S. de Vries, P. Sever, A. Linneberg, E. P. Bottinger, S. Padmanabhan, B. M. Psaty, N. Sotoodehnia, I. Kolcic, D. E. R. Group, D. O. Arnar, D. F. Gudbjartsson, H. Holm, B. Balkau, C. T. Silva, C. H. Newton-Cheh, K. Nikus, P. Salo, K. L. Mohlke, P. A. Peyser, H. Schunkert, M. Lorentzon, J. Lahti, D. C. Rao, M. C. Cornelis, J. D. Faul, J. A. Smith, K. Stolarz-Skrzypek, S. Bandinelli, M. P. Concas, G. Sinagra, T. Meitinger, M. Waldenberger, M. F. Sinner, K. Strauch, G. E. Delgado, K. D. Taylor, J. Yao, L. Foco, O. Melander, J. de Graaf, R. de Mutsert, E. J. C. de Geus, A. Johansson, P. K. Joshi, L. Lind, A. Franke, P. W. Macfarlane, K. V. Tarasov, N. Tan, S. B. Felix, E. S. Tai, D. Q. Quek, H. Snieder, J. Ormel, M. Ingelsson, C. Lindgren, A. P. Morris, O. T. Raitakari, T. Hansen, T. Assimes, V. Gudnason, N. J. Timpson, A. C. Morrison, P. B. Munroe, D. P. Strachan, N. Grarup, R. J. F. Loos, S. R. Heckbert, P. Vollenweider, C. Hayward, K. Stefansson, P. Froguel, L. Groop, N. J. Wareham, C. M. van Duijn, M. F. Feitosa, C. J. O'Donnell, M. Kahonen, M. Perola, M. Boehnke, S. L. R. Kardia, J. Erdmann, C. N. A. Palmer, C. Ohlsson, D. J. Porteous, J. G. Eriksson, C. Bouchard, S. Moebus, P. Kraft, D. R. Weir, D. Cusi, L. Ferrucci, S. Ulivi, G. Girotto, A. Correa, S. Kaab, A. Peters, J. C. Chambers, J. S. Kooner, W. Marz, J. I. Rotter, A. A. Hicks, J. G. Smith, L. Kiemeney, D. O. Mook-Kanamori, B. Penninx, U. Gyllensten, J. F. Wilson, S. Burgess, J. Sundstrom, W. Lieb, J. W. Jukema, M. Eijgelsheim, E. L. M. Lakatta, C. Y. Cheng, M. Dorr, T. Y. Wong, C. Sabanayagam, A. J. Oldehinkel, H. Riese, T. Lehtimaki, N. Verweij and P. van der Harst (2023). "Genetic insights into resting heart rate and its role in cardiovascular disease." Nat Commun 14(1): 4646.
Vasileiadis, G. K., S. Sayols, S. S. Zhao, T. Fatima and C. Maglio (2023). "Adipokines and risk of rheumatoid arthritis: A two-sample multivariable Mendelian randomisation study." PLoS One 18(6): e0286981.
Vianello, E., Persson, J., Andersson, B., van Veen Bsc, S., Dias, T.L., and F. Santoro, Östensson, M., Obudulu, O., Agbajogu, C., Torkzadeh, S., VSV-EBOVAC and VSVEBOPLUS Consortia, Nakaya, H., Medaglini, D., Siegrist, C.-A., Ottenhoff, T.H.M., Harandi, A.M (2023). "Global blood miRNA profiling unravels early signatures of immunogenicity of Ebola vaccine rVSVΔG-ZEBOVGP." ISCIENCE.
Vono, M., B. Mastelic-Gavillet, E. Mohr, M. Ostensson, J. Persson, T. A. Olafsdottir, S. Lemeille, D. Pejoski, O. Hartley, D. Christensen, P. Andersen, A. M. Didierlaurent, A. M. Harandi, P. H. Lambert and C. A. Siegrist (2023). "C-type lectin receptor agonists elicit functional IL21-expressing Tfh cells and induce primary B cell responses in neonates." Front Immunol 14: 1155200.
Widstrom, J., M. E. Andersson, J. Westin, M. Wahllof, M. Lindh and G. E. Rydell (2023). "Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing." J Clin Microbiol 61(11): e0060823.
Zheng, J., E. Wheeler, M. Pietzner, T. F. M. Andlauer, M. S. Yau, A. E. Hartley, B. M. Brumpton, H. Rasheed, J. P. Kemp, M. Frysz, J. Robinson, S. Reppe, V. Prijatelj, K. M. Gautvik, L. Falk, W. Maerz, I. Gergei, P. A. Peyser, M. Kavousi, P. S. de Vries, C. L. Miller, M. Bos, S. W. van der Laan, R. Malhotra, M. Herrmann, H. Scharnagl, M. Kleber, G. Dedoussis, E. Zeggini, M. Nethander, C. Ohlsson, M. Lorentzon, N. Wareham, C. Langenberg, M. V. Holmes, G. Davey Smith and J. H. Tobias (2023). "Lowering of Circulating Sclerostin May Increase Risk of Atherosclerosis and Its Risk Factors: Evidence From a Genome-Wide Association Meta-Analysis Followed by Mendelian Randomization." Arthritis Rheumatol 75(10): 1781-1792.
Abrahamsson, S., F. Eiengard, A. Rohlin and M. Davila Lopez (2022). "PPsiFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data." BMC Bioinformatics 23(1): 59.
Alves, G., A. Ogurtsov, R. Karlsson, D. Jaen-Luchoro, B. Pineiro-Iglesias, F. Salva-Serra, B. Andersson, E. R. B. Moore and Y. K. Yu (2022). "Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach." J Am Soc Mass Spectrom 33(6): 917-931.
Arabpour, M., C. Lebrero-Fernandez, K. Schon, A. Stromberg, V. Borjesson, K. Lahl, M. Ballegeer, X. Saelens, D. Angeletti, W. Agace and N. Lycke (2022). "ADP-ribosylating adjuvant reveals plasticity in cDC1 cells that drive mucosal Th17 cell development and protection against influenza virus infection." Mucosal Immunol 15(4): 745-761.
Bahrami, F., N. Masoudzadeh, S. Van Veen, J. Persson, A. Lari, H. Sarvnaz, Y. Taslimi, M. Ostensson, B. Andersson, I. Sharifi, V. M. Goyonlo, T. H. Ottenhoff, M. C. Haks, A. M. Harandi and S. Rafati (2022). "Blood transcriptional profiles distinguish different clinical stages of cutaneous leishmaniasis in humans." Mol Immunol 149: 165-173.
Bartik, Z., U. Sillen, M. Ostensson, S. Fransson, A. Djos, R. Sjoberg and T. Martinsson (2022). "A genome-wide scan to locate regions associated with familial vesicoureteral reflux." Exp Ther Med 23(1): 92.
Berglund, E., G. Barbany, C. Orsmark-Pietras, L. Fogelstrand, J. Abrahamsson, I. Golovleva, H. Hallbook, M. Hoglund, V. Lazarevic, L. A. Levin, J. Nordlund, U. Noren-Nystrom, J. Palle, T. Thangavelu, L. Palmqvist, V. Wirta, L. Cavelier, T. Fioretos and R. Rosenquist (2022). "A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias." Front Med (Lausanne) 9: 842507.
Bygdell, M., S. Leach, L. Lundberg, D. Gyll, J. Martikainen, A. Santosa, H. Li, M. Gisslen and F. Nyberg (2022). "A comprehensive characterisation of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the ICD-10 diagnosis code (U09.9): a population-based cohort study." Int J Infect Dis.
Bygdell, M., C. Ohlsson, L. Lilja, J. Celind, J. Martikainen, A. Rosengren and J. M. Kindblom (2022). "Birth weight and young adult body mass index for predicting the risk of developing adult heart failure in men." Eur J Prev Cardiol 29(6): 971-978.
Börjesson, V., A. Martinez-Monleon, S. Fransson, P. Kogner, J. I. Johnsen, J. Milosevic and M. D. López (2022). "TC-hunter: identification of the insertion site of a transgenic gene within the host genome." BMC Genomics 23(1): 149.
Celind, J., M. Bygdell, J. Martikainen, C. Ohlsson and J. M. Kindblom (2022). "Childhood overweight and risk of obesity-related adult cancer in men." Cancer Commun (Lond) 42(6): 576-579.
Deland, L., S. Keane, T. O. Bontell, H. Fagman, H. Sjogren, A. E. Lind, H. Caren, M. Tisell, J. A. Nilsson, K. Ejeskar, M. Sabel and F. Abel (2022). "Novel TPR::ROS1 Fusion Gene Activates MAPK, PI3K and JAK/STAT Signaling in an Infant-type Pediatric Glioma." Cancer Genomics Proteomics 19(6): 711-726.
Djos, A., D. Treis, S. Fransson, L. Gordon Murkes, S. Wessman, J. Asmundsson, A. Markstrom, P. Kogner and T. Martinsson (2022). "Multifocal Neuroblastoma and Central Hypoventilation in An Infant with Germline ALK F1174I Mutation." Diagnostics (Basel) 12(9).
Ekman-Joelsson, B. M., P. Brandstrom, M. Allen, B. Andersson, H. Wahlander, K. Mellgren and O. Ekwall (2022). "Immunological differences between heart- and kidney-transplanted children: a cross-sectional study." Cardiol Young: 1-6.
Fioretos, T., V. Wirta, L. Cavelier, E. Berglund, M. Friedman, M. Akhras, J. Botling, H. Ehrencrona, L. Engstrand, G. Helenius, T. Fagerqvist, D. Gisselsson, S. Gruvberger-Saal, U. Gyllensten, M. Heidenblad, K. Hoglund, B. Jacobsson, M. Johansson, A. Johansson, M. J. Soller, M. Landstrom, P. Larsson, L. A. Levin, A. Lindstrand, L. Lovmar, A. Lyander, M. Melin, A. Nordgren, G. Nordmark, P. Molling, L. Palmqvist, R. Palmqvist, D. Repsilber, P. Sikora, B. Stenmark, P. Soderkvist, H. Stranneheim, T. Strid, C. E. Wheelock, M. Wadelius, A. Wedell, A. Edsjo and R. Rosenquist (2022). "Implementing precision medicine in a regionally organized healthcare system in Sweden." Nat Med 28(10): 1980-1982.
Grahnemo, L., M. Nethander, E. Coward, M. E. Gabrielsen, S. Sree, J. M. Billod, L. Engstrand, S. Abrahamsson, A. Langhammer, K. Hveem and C. Ohlsson (2022). "Cross-sectional associations between the gut microbe Ruminococcus gnavus and features of the metabolic syndrome." Lancet Diabetes Endocrinol 10(7): 481-483.
Hedberg-Oldfors, C., O. Eliasdottir, M. Geijer, C. Lindberg and A. Oldfors (2022). "Dominantly inherited myosin IIa myopathy caused by aberrant splicing of MYH2." BMC Neurol 22(1): 428.
Karlsson, L., C. G. Nyvold, A. Soboli, P. Johansson, L. Palmqvist, A. Tierens, H. Hasle, B. Lausen, O. G. Jonsson, G. W. Jurgensen, L. H. Ebbesen, J. Abrahamsson and L. Fogelstrand (2022). "Fusion transcript analysis reveals slower response kinetics than multiparameter flow cytometry in childhood acute myeloid leukaemia." Int J Lab Hematol 44(6): 1094-1101.
Kondori, N., A. Kurtovic, B. Pineiro-Iglesias, F. Salva-Serra, D. Jaen-Luchoro, B. Andersson, G. Alves, A. Ogurtsov, A. Thorsell, J. Fuchs, T. Tunovic, N. Kamenska, A. Karlsson, Y. K. Yu, E. R. B. Moore and R. Karlsson (2021). "Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood." Front Cell Infect Microbiol 11: 634215.
Landgren, V., E. Fernell, C. Gillberg, M. Landgren and M. Johnson (2022). "Deficits in attention, motor control and perception childhood to age 30 years: prospective case-control study of outcome predictors." BMJ Open 12(3): e054424.
Landgren, V., Z. Raanan Soltis, E. Svensson, M. Theodosiou, M. Landgren and R. Knez (2022). "The ESSENCE-Questionnaire in Medical Records Screening for Neurodevelopmental Symptoms/Problems: Utility and Clinical Validity." Neuropsychiatr Dis Treat 18: 2559-2574.
Larsson, S. B., G. S. von Feilitzen, M. E. Andersson, P. Sikora, M. Lindh, R. Norden, S. Nilsson and R. Sigstrom (2022). "Self-reported symptom severity, general health, and impairment in post-acute phases of COVID-19: retrospective cohort study of Swedish public employees." Sci Rep 12(1): 19818.
Martin, W. P., Y. H. D. Chuah, M. Abdelaal, A. Pedersen, D. Malmodin, S. Abrahamsson, M. Hutter, C. Godson, E. P. Brennan, L. Fandriks, C. W. le Roux and N. G. Docherty (2021). "Medications Activating Tubular Fatty Acid Oxidation Enhance the Protective Effects of Roux-en-Y Gastric Bypass Surgery in a Rat Model of Early Diabetic Kidney Disease." Front Endocrinol (Lausanne) 12: 757228.
Martin, W. P., M. Nair, Y. H. D. Chuah, D. Malmodin, A. Pedersen, S. Abrahamsson, M. Hutter, M. Abdelaal, J. A. Elliott, N. Fearon, H. Eckhardt, C. Godson, E. P. Brennan, L. Fandriks, C. W. le Roux and N. G. Docherty (2022). "Dietary restriction and medical therapy drive PPARalpha-regulated improvements in early diabetic kidney disease in male rats." Clin Sci (Lond) 136(21): 1485-1511.
Martinez-Monleon, A., H. Kryh Oberg, J. Gaarder, A. P. Berbegall, N. Javanmardi, A. Djos, M. Ussowicz, S. Taschner-Mandl, I. M. Ambros, I. Ora, B. Sandstedt, K. Beiske, R. Ladenstein, R. Noguera, P. F. Ambros, L. Gordon Murkes, G. Ljungman, P. Kogner, S. Fransson and T. Martinsson (2022). "Amplification of CDK4 and MDM2: a detailed study of a high-risk neuroblastoma subgroup." Sci Rep 12(1): 12420.
Micallef, P., M. Vujicic, Y. Wu, E. Peris, Y. Wang, B. Chanclon, A. Stahlberg, S. L. Cardell and I. Wernstedt Asterholm (2022). "C1QTNF3 is Upregulated During Subcutaneous Adipose Tissue Remodeling and Stimulates Macrophage Chemotaxis and M1-Like Polarization." Front Immunol 13: 914956.
Nethander, M., E. Coward, E. Reimann, L. Grahnemo, M. E. Gabrielsen, C. Wibom, T. Estonian Biobank Research, R. Magi, T. Funck-Brentano, M. Hoff, A. Langhammer, U. Pettersson-Kymmer, K. Hveem and C. Ohlsson (2022). "Assessment of the genetic and clinical determinants of hip fracture risk: Genome-wide association and Mendelian randomization study." Cell Rep Med 3(10): 100776.
Nilsson, T., A. Waraky, A. Ostlund, S. Li, A. Staffas, J. Asp, L. Fogelstrand, J. Abrahamsson and L. Palmqvist (2022). "An induced pluripotent stem cell t(7;12)(q36;p13) acute myeloid leukemia model shows high expression of MNX1 and a block in differentiation of the erythroid and megakaryocytic lineages." Int J Cancer 151(5): 770-782.
Olausson, J., S. Brunet, D. Vracar, Y. Tian, S. Abrahamsson, S. H. Meghadri, P. Sikora, M. Lind Karlberg, H. E. Jakobsson and K. W. Tang (2022). "Optimization of cerebrospinal fluid microbial DNA metagenomic sequencing diagnostics." Sci Rep 12(1): 3378.
Pattanaik, B., M. Hammarlund, F. Mjornstedt, M. A. Ulleryd, W. Zhong, M. Uhlen, A. Gummesson, G. Bergstrom and M. E. Johansson (2022). "Polymorphisms in alpha 7 nicotinic acetylcholine receptor gene, CHRNA7, and its partially duplicated gene, CHRFAM7A, associate with increased inflammatory response in human peripheral mononuclear cells." FASEB J 36(5): e22271.
Persson, J., B. Andersson, S. van Veen, M. C. Haks, O. Obudulu, S. Torkzadeh, T. H. M. Ottenhoff, N. Kanberg, M. Gisslen, L. M. Andersson and A. M. Harandi (2022). "Stratification of COVID-19 patients based on quantitative immune-related gene expression in whole blood." Mol Immunol 145: 17-26.
Quester, J., M. Nethander, A. Eriksson and C. Ohlsson (2022). "Endogenous DHEAS Is Causally Linked With Lumbar Spine Bone Mineral Density and Forearm Fractures in Women." J Clin Endocrinol Metab 107(5): e2080-e2086.
Rayasam, A., A. Mottahedin, J. Faustino, C. Mallard and Z. S. Vexler (2022). "Scavenger receptor CD36 governs recruitment of myeloid cells to the blood-CSF barrier after stroke in neonatal mice." J Neuroinflammation 19(1): 47.
Thomsen, C., E. Malfatti, A. Jovanovic, M. Roberts, O. Kalev, C. Lindberg and A. Oldfors (2022). "Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency." Neuropathol Appl Neurobiol 48(1): e12761.
Tillander, J. A. N., K. Rilby, K. Svensson Malchau, S. Skovbjerg, E. Lindberg, O. Rolfson and M. Trobos (2022). "Treatment of periprosthetic joint infections guided by minimum biofilm eradication concentration (MBEC) in addition to minimum inhibitory concentration (MIC): protocol for a prospective randomised clinical trial." BMJ Open 12(9): e058168.
Treis, D., G. Umapathy, S. Fransson, J. Guan, P. Mendoza-Garcia, J. T. Siaw, S. Wessman, L. Gordon Murkes, J. J. E. Stenman, A. Djos, L. H. M. Elfman, J. I. Johnsen, B. Hallberg, R. H. Palmer, T. Martinsson and P. Kogner (2022). "Sustained Response to Entrectinib in an Infant With a Germline ALKAL2 Variant and Refractory Metastatic Neuroblastoma With Chromosomal 2p Gain and Anaplastic Lymphoma Kinase and Tropomyosin Receptor Kinase Activation." JCO Precis Oncol 6: e2100271.
Truve, K. (2022). Comparisons of two tools for identifying mutational signatures in cancer, Bioinformatics Core Facility. https://www.gu.se/sites/default/files/2022-03/Signatures_2022.pdf.
Wikstrom, T., S. Abrahamsson, J. Bengtsson-Palme, J. Ek, P. Kuusela, E. Rekabdar, P. Lindgren, U. B. Wennerholm, B. Jacobsson, L. Valentin and H. Hagberg (2022). "Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery." Clin Transl Med 12(9): e1023.
Yarmolinsky, J., V. Diez-Obrero, T. G. Richardson, M. Pigeyre, J. Sjaarda, G. Pare, V. M. Walker, E. E. Vincent, V. Y. Tan, M. Obon-Santacana, D. Albanes, J. Hampe, A. Gsur, H. Hampel, R. K. Pai, M. Jenkins, S. Gallinger, G. Casey, W. Zheng, C. I. Amos, C. International Lung Cancer, P. consortium, M. consortium, G. D. Smith, R. M. Martin and V. Moreno (2022). "Genetically proxied therapeutic inhibition of antihypertensive drug targets and risk of common cancers: A mendelian randomization analysis." PLoS Med 19(2): e1003897.
Abrahamsson, S. and M. Davila Lopez (2021). "Comparison of online learning designs during the COVID-19 pandemic within bioinformatics courses in higher education." Bioinformatics 37(Suppl_1): i9-i15.
Alm Rosenblad, M., M. D. Lopez and T. Samuelsson (2021). "The enigmatic RNase MRP of kinetoplastids." RNA Biol 18(sup1): 139-147.
Angerfors, A. and M. Davila Lopez (2021). Pathway analysis software evaluation, Bioinformatics Core Facilty. http://dx.doi.org/10.13140/RG.2.2.27650.56005.
Bygdell, M., C. Ohlsson, L. Lilja, J. Celind, J. Martikainen, A. Rosengren and J. M. Kindblom (2021). "Birth weight and young adult body mass index for predicting the risk of developing adult heart failure in men." Eur J Prev Cardiol.
Celind, J., M. Bygdell, J. Martikainen, J. Styrke, J. E. Damber, J. M. Kindblom and C. Ohlsson (2021). "Timing of the Pubertal Growth Spurt and Prostate Cancer." Cancers (Basel) 13(24).
Crawford, A. A., S. Bankier, E. Altmaier, C. L. K. Barnes, D. W. Clark, R. Ermel, N. Friedrich, P. van der Harst, P. K. Joshi, V. Karhunen, J. Lahti, A. Mahajan, M. Mangino, M. Nethander, A. Neumann, M. Pietzner, K. Sukhavasi, C. A. Wang, S. J. L. Bakker, J. L. M. Bjorkegren, H. Campbell, J. Eriksson, C. Gieger, C. Hayward, M. R. Jarvelin, S. McLachlan, A. P. Morris, C. Ohlsson, C. E. Pennell, J. Price, I. Rudan, A. Ruusalepp, T. Spector, H. Tiemeier, H. Volzke, J. F. Wilson, T. Michoel, N. J. Timpson, G. D. Smith, B. R. Walker and C. O. N. consortium (2021). "Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease." J Hum Genet 66(6): 625-636.
Eriksson, A. L., N. Friedrich, M. K. Karlsson, O. Ljunggren, M. Lorentzon, M. Nethander, H. Wallaschofski, D. Mellstrom and C. Ohlsson (2021). "Serum Glycine Levels Are Associated With Cortical Bone Properties and Fracture Risk in Men." J Clin Endocrinol Metab 106(12): e5021-e5029.
Gotlib, D. (2021). MaSIliM: Mass Spectrometry Imaging and Light Microscopy fusion Bioinformatics Core Facility. http://dx.doi.org/10.13140/RG.2.2.15056.17920.
Graham, S. E., S. L. Clarke, K. H. Wu, S. Kanoni, et.al, (2021). "The power of genetic diversity in genome-wide association studies of lipids." Nature 600(7890): 675-679.
Ilinca, A., E. Englund, S. Samuelsson, K. Truve, E. Kafantari, N. Martinez-Majander, J. Putaala, C. Hakansson, A. G. Lindgren and A. Puschmann (2021). "MAP3K6 Mutations in a Neurovascular Disease Causing Stroke, Cognitive Impairment, and Tremor." Neurol Genet 7(1): e548.
Jones, G., K. Trajanoska, A. J. Santanasto, N. Stringa, C. L. Kuo, J. L. Atkins, J. R. Lewis, T. Duong, S. Hong, M. L. Biggs, J. Luan, C. Sarnowski, K. L. Lunetta, T. Tanaka, M. K. Wojczynski, R. Cvejkus, M. Nethander, S. Ghasemi, J. Yang, M. C. Zillikens, S. Walter, K. Sicinski, E. Kague, C. L. Ackert-Bicknell, D. E. Arking, B. G. Windham, E. Boerwinkle, M. L. Grove, M. Graff, D. Spira, I. Demuth, N. van der Velde, L. de Groot, B. M. Psaty, M. C. Odden, A. E. Fohner, C. Langenberg, N. J. Wareham, S. Bandinelli, N. M. van Schoor, M. Huisman, Q. Tan, J. Zmuda, D. Mellstrom, M. Karlsson, D. A. Bennett, A. S. Buchman, P. L. De Jager, A. G. Uitterlinden, U. Volker, T. Kocher, A. Teumer, L. Rodriguez-Manas, F. J. Garcia, J. A. Carnicero, P. Herd, L. Bertram, C. Ohlsson, J. M. Murabito, D. Melzer, G. A. Kuchel, L. Ferrucci, D. Karasik, F. Rivadeneira, D. P. Kiel and L. C. Pilling (2021). "Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women." Nat Commun 12(1): 654.
Kindblom, J. M., M. Bygdell, O. Hjelmgren, J. Martikainen, A. Rosengren, G. Bergstrom and C. Ohlsson (2021). "Pubertal Body Mass Index Change Is Associated With Adult Coronary Atherosclerosis and Acute Coronary Events in Men." Arterioscler Thromb Vasc Biol 41(8): 2318-2327.
Kondori, N., A. Kurtovic, B. Pineiro-Iglesias, F. Salva-Serra, D. Jaen-Luchoro, B. Andersson, G. Alves, A. Ogurtsov, A. Thorsell, J. Fuchs, T. Tunovic, N. Kamenska, A. Karlsson, Y. K. Yu, E. R. B. Moore and R. Karlsson (2021). "Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood." Front Cell Infect Microbiol 11: 634215.
Lilja, L., M. Bygdell, J. Martikainen, A. Rosengren, C. Ohlsson and J. M. Kindblom (2021). "Low Birth Weight as an Early-Life Risk Factor for Adult Stroke Among Men." J Pediatr 237: 162-167 e164.
Lu, T., V. Forgetta, J. Keller-Baruch, M. Nethander, D. Bennett, M. Forest, S. Bhatnagar, R. G. Walters, K. Lin, Z. Chen, L. Li, M. Karlsson, D. Mellstrom, E. Orwoll, E. V. McCloskey, J. A. Kanis, W. D. Leslie, R. J. Clarke, C. Ohlsson, C. M. T. Greenwood and J. B. Richards (2021). "Improved prediction of fracture risk leveraging a genome-wide polygenic risk score." Genome Med 13(1): 16.
Martin, W. P., Y. H. D. Chuah, M. Abdelaal, A. Pedersen, D. Malmodin, S. Abrahamsson, M. Hutter, C. Godson, E. P. Brennan, L. Fandriks, C. W. le Roux and N. G. Docherty (2021). "Medications Activating Tubular Fatty Acid Oxidation Enhance the Protective Effects of Roux-en-Y Gastric Bypass Surgery in a Rat Model of Early Diabetic Kidney Disease." Front Endocrinol (Lausanne) 12: 757228.
Nethander, M., J. Quester, L. Vandenput and C. Ohlsson (2021). "Association of Genetically Predicted Serum Estradiol With Risk of Thromboembolism in Men: A Mendelian Randomization Study." J Clin Endocrinol Metab 106(8): e3078-e3086.
Nilsson, K. H., P. Henning, M. El Shahawy, M. Nethander, T. L. Andersen, C. Ejersted, J. Wu, K. L. Gustafsson, A. Koskela, J. Tuukkanen, P. P. C. Souza, J. Tuckermann, M. Lorentzon, L. E. Ruud, T. Lehtimaki, J. H. Tobias, S. Zhou, U. H. Lerner, J. B. Richards, S. Moverare-Skrtic and C. Ohlsson (2021). "RSPO3 is important for trabecular bone and fracture risk in mice and humans." Nat Commun 12(1): 4923.
Olsson Lindvall, M., A. Angerfors, B. Andersson, S. Nilsson, M. Davila Lopez, L. Hansson, T. M. Stanne and C. Jern (2021). "Comparison of DNA Methylation Profiles of Hemostatic Genes between Liver Tissue and Peripheral Blood within Individuals." Thromb Haemost 121(5): 573-583.
Oltean, M., J. Bagge, G. Dindelegan, D. Kenny, A. Molinaro, M. Hellstrom, O. Nilsson, C. Sihlbom, A. Casselbrant, M. Davila and M. Olausson (2021). "The Proteomic Signature of Intestinal Acute Rejection in the Mouse." Metabolites 12(1).
Quester, J., M. Nethander, A. Eriksson and C. Ohlsson (2021). "Endogenous DHEAS is Causally Linked with Lumbar Spine Bone Mineral Density and Forearm Fractures in Women." J Clin Endocrinol Metab.
Zelco, A., V. Borjesson, J. K. de Kanter, C. Lebrero-Fernandez, V. M. Lauschke, E. Rocha-Ferreira, G. Nilsson, S. Nair, P. Svedin, M. Bemark, H. Hagberg, C. Mallard, F. C. P. Holstege and X. Wang (2021). "Single-cell atlas reveals meningeal leukocyte heterogeneity in the developing mouse brain." Genes Dev 35(15-16): 1190-1207.
Ziegler, P., Y. Tian, Y. Bai, S. Abrahamsson, A. Backerholm, A. S. Reznik, A. Green, J. A. Moore, S. E. Lee, M. M. Myerburg, H. J. Park, K. W. Tang and K. H. Y. Shair (2021). "A primary nasopharyngeal three-dimensional air-liquid interface cell culture model of the pseudostratified epithelium reveals differential donor- and cell type-specific susceptibility to Epstein-Barr virus infection." PLoS Pathog 17(4): e1009041.
Börjesson, V. (2020). Comparison of bioinformatic tools for pseudo time analysis, Bioinformatics Core Facility. https://www.gu.se/sites/default/files/2022-02/pseudotimeTools_2020.pdf.
Celind, J., C. Ohlsson, M. Bygdell, J. Martikainen, C. Lewerin and J. M. Kindblom (2020). "Childhood body mass index is associated with the risk of adult hematologic malignancies in men-The best Gothenburg cohort." Int J Cancer 147(9): 2355-2362.
Garcia, P., C. Bizama, L. Rosa, J. A. Espinoza, H. Weber, J. Cerda-Infante, M. Sanchez, V. P. Montecinos, J. Lorenzo-Bermejo, F. Boekstegers, M. Davila-Lopez, F. Alfaro, C. Leiva-Acevedo, Z. Parra, D. Romero, S. Kato, P. Leal, M. Lagos and J. C. Roa (2020). "Functional and genomic characterization of three novel cell lines derived from a metastatic gallbladder cancer tumor." Biol Res 53(1): 13.
Gotlib, D. (2020). Reaper: A lightweight file monitor, Bioinformatics Core Facility. https://www.gu.se/sites/default/files/2022-02/Reaper_2020.pdf.
Ilinca, A., N. Martinez-Majander, S. Samuelsson, P. Piccinelli, K. Truve, J. Cole, S. Kittner, M. Soller, U. Kristoffersson, T. Tatlisumak, A. Puschmann, J. Putaala and A. Lindgren (2020). "Whole-Exome Sequencing in 22 Young Ischemic Stroke Patients With Familial Clustering of Stroke." Stroke 51(4): 1056-1063.
Javanmardi, N., S. Fransson, A. Djos, G. Umapathy, M. Ostensson, J. Milosevic, M. Borenas, B. Hallberg, P. Kogner, T. Martinsson and R. H. Palmer (2019). "Analysis of ALK, MYCN, and the ALK ligand ALKAL2 (FAM150B/AUGalpha) in neuroblastoma patient samples with chromosome arm 2p rearrangements." Genes Chromosomes Cancer.
Marild, K., C. Ohlsson, M. Bygdell, J. Martikainen, L. Savendahl, K. Stordal and J. M. Kindblom (2020). "Growth and Pubertal Timing in Boys With Adult-diagnosed Celiac Disease: A Population-based Longitudinal Cohort Study." J Pediatr Gastroenterol Nutr 70(6): 853-857.
Masoudzadeh, N., M. Ostensson, J. Persson, V. Mashayekhi Goyonlo, C. Agbajogu, Y. Taslimi, R. Erfanian Salim, F. Zahedifard, A. Mizbani, H. Malekafzali Ardekani, B. M. Gunn, S. Rafati and A. M. Harandi (2020). "Molecular signatures of anthroponotic cutaneous leishmaniasis in the lesions of patients infected with Leishmania tropica." Sci Rep 10(1): 16198.
Nethander, M., U. Pettersson-Kymmer, L. Vandenput, M. Lorentzon, M. Karlsson, D. Mellstrom and C. Ohlsson (2020). "BMD-Related Genetic Risk Scores Predict Site-Specific Fractures as Well as Trabecular and Cortical Bone Microstructure." J Clin Endocrinol Metab 105(4).
Nwaru, B. I., C. Ohlsson, M. Bygdell, J. Martikainen and J. M. Kindblom (2020). "Pubertal BMI change and adult-onset asthma in men: Population-based cohort study in Sweden." Clin Exp Allergy 50(1): 51-60.
Olsson Lindvall, M., A. Angerfors, B. Andersson, S. Nilsson, M. Davila Lopez, L. Hansson, T. M. Stanne and C. Jern (2020). "Comparison of DNA Methylation Profiles of Hemostatic Genes between Liver Tissue and Peripheral Blood within Individuals." Thromb Haemost.
Olsson Lindvall, M., M. Davila Lopez, S. Klasson, L. Hansson, S. Nilsson, T. M. Stanne and C. Jern (2020). "A Comprehensive Sequencing-Based Analysis of Allelic Methylation Patterns in Hemostatic Genes in Human Liver." Thromb Haemost 120(2): 229-242.
Purhonen, J., V. Grigorjev, R. Ekiert, N. Aho, J. Rajendran, R. Pietras, K. Truve, M. Wikstrom, V. Sharma, A. Osyczka, V. Fellman and J. Kallijarvi (2020). "A spontaneous mitonuclear epistasis converging on Rieske Fe-S protein exacerbates complex III deficiency in mice." Nat Commun 11(1): 322.
Ringlander, J., C. Skoglund, K. Prakash, M. E. Andersson, S. B. Larsson, K. W. Tang, G. E. Rydell, S. Abrahamsson, M. Castedal, H. Norder, K. Hellstrand and M. Lindh (2020). "Deep sequencing of liver explant transcriptomes reveals extensive expression from integrated hepatitis B virus DNA." J Viral Hepat 27(11): 1162-1170.
Scherer, D., M. D. Davila Lopez, B. Goeppert, S. Abrahamsson, R. G. Gonzalez Silos, I. Nova, K. Marcelain, J. C. Roa, D. Ibberson, S. U. Umu, T. B. Rounge, S. Roessler and J. L. Bermejo (2020). "RNA Sequencing of Hepatobiliary Cancer Cell Lines: Data and Applications to Mutational and Transcriptomic Profiling." Cancers (Basel) 12(9).
Siaw, J. T., N. Javanmardi, J. Van den Eynden, D. E. Lind, S. Fransson, A. Martinez-Monleon, A. Djos, R. M. Sjoberg, M. Ostensson, H. Caren, G. Troen, K. Beiske, A. P. Berbegall, R. Noguera, W. Y. Lai, P. Kogner, R. H. Palmer, B. Hallberg and T. Martinsson (2020). "11q Deletion or ALK Activity Curbs DLG2 Expression to Maintain an Undifferentiated State in Neuroblastoma." Cell Rep 32(12): 108171.
Taslimi, Y., C. Agbajogu, S. F. Brynjolfsson, N. Masoudzadeh, V. Mashayekhi, S. Gharibzadeh, M. Ostensson, S. S. Nakka, A. Mizbani, S. Rafati and A. M. Harandi (2020). "Profiling inflammatory response in lesions of cutaneous leishmaniasis patients using a non-invasive sampling method combined with a high-throughput protein detection assay." Cytokine 130: 155056.
Tengvall, S., C. Ohlsson, M. Bygdell, J. Martikainen, A. Andersson and J. M. Kindblom (2020). "Pubertal-onset overweight and COPD in men: a cohort study." ERJ Open Res 6(1).
Truve, K., T. Z. Parris, D. Vizlin-Hodzic, S. Salmela, E. Berger, H. Agren and K. Funa (2020). "Identification of candidate genetic variants and altered protein expression in neural stem and mature neural cells support altered microtubule function to be an essential component in bipolar disorder." Transl Psychiatry 10(1): 390.
Uribe, P., A. Johansson, R. Jugdaohsingh, J. J. Powell, C. Magnusson, M. Davila, A. Westerlund and M. Ransjo (2020). "Soluble silica stimulates osteogenic differentiation and gap junction communication in human dental follicle cells." Sci Rep 10(1): 9923.
Bostrom, M., et al., Chronic disturbance in the thalamus following cranial irradiation to the developing mouse brain. Sci Rep, 2019. 9(1): p. 9588.
Celind, J., et al., Childhood Body Mass Index Is Associated with Risk of Adult Colon Cancer in Men: An Association Modulated by Pubertal Change in Body Mass Index. Cancer Epidemiol Biomarkers Prev, 2019. 28(5): p. 974-979.
Funck-Brentano, T., et al., Causal Factors for Knee, Hip, and Hand Osteoarthritis: A Mendelian Randomization Study in the UK Biobank. Arthritis Rheumatol, 2019. 71(10): p. 1634-1641.
Hedberg-Oldfors, C., et al., Cardiomyopathy with lethal arrhythmias associated with inactivation of KLHL24. Hum Mol Genet, 2019. 28(11): p. 1919-1929.
Javanmardi, N., et al., Low Frequency ALK Hotspots Mutations In Neuroblastoma Tumours Detected By Ultra-deep Sequencing: Implications For ALK Inhibitor Treatment. Sci Rep, 2019. 9(1): p. 2199.
Javanmardi, N., et al., Analysis of ALK, MYCN, and the ALK ligand ALKAL2 (FAM150B/AUGalpha) in neuroblastoma patient samples with chromosome arm 2p rearrangements. Genes Chromosomes Cancer, 2019.
Karasik, D., et al., Disentangling the genetics of lean mass. Am J Clin Nutr, 2019. 109(2): p. 276-287.
Laiz Heckmann Barbalho de Figueroa, R. S., Jennifer Horkoff, Soni Chauhan, Marcela Davila Lopez, Francisco Gomes de Oliveira Neto and Alexander Schliep (2019). "A Modeling Approach for Bioinformatics Workflows." PoEM 2019. Lecture Notes in Business Information Processing 369.
Nethander, M., et al., Evidence of a Causal Effect of Estradiol on Fracture Risk in Men. J Clin Endocrinol Metab, 2019. 104(2): p. 433-442.
Nwaru, B.I., et al., Pubertal BMI change and adult-onset asthma in men: Population-based cohort study in Sweden. Clin Exp Allergy, 2019.
Ohlsson, C., et al., BMI Change During Puberty Is an Important Determinant of Adult Type 2 Diabetes Risk in Men. J Clin Endocrinol Metab, 2019. 104(5): p. 1823-1832.
Olsson Lindvall, M., et al., Hemostatic Genes Exhibit a High Degree of Allele-Specific Regulation in Liver. Thromb Haemost, 2019. 119(7): p. 1072-1083.
Purhonen, J., et al., A spontaneous mitonuclear epistasis converging on Rieske Fe-S protein exacerbates complex III deficiency in mice. Nat Commun, 2020. 11(1): p. 322.Moverare-Skrtic, S., et al., Osteoblast-derived NOTUM reduces cortical bone mass in mice and the NOTUM locus is associated with bone mineral density in humans. FASEB J, 2019. 33(10): p. 11163-11179.
Samelson, E.J., et al., Cortical and trabecular bone microarchitecture as an independent predictor of incident fracture risk in older women and men in the Bone Microarchitecture International Consortium (BoMIC): a prospective study. Lancet Diabetes Endocrinol, 2019. 7(1): p. 34-43.
Zheng, J., et al., Mendelian Randomization Analysis Reveals a Causal Influence of Circulating Sclerostin Levels on Bone Mineral Density and Fractures. J Bone Miner Res, 2019. 34(10): p. 1824-1836.
Hofving, T., et al., The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell lines. Endocr Relat Cancer, 2018. 25(4): p. X1-X2.
Nymo, S.H., et al., Serum neutrophil gelatinase-associated lipocalin (NGAL) concentration is independently associated with mortality in patients with acute coronary syndrome. Int J Cardiol, 2018. 262: p. 79-84.
Orebaugh, C.D., et al., Mapping Ribonucleotides Incorporated into DNA by Hydrolytic End-Sequencing. Methods Mol Biol, 2018. 1672: p. 329-345.
Parris, T.Z., et al., Genome-wide multi-omics profiling of the 8p11-p12 amplicon in breast carcinoma. Oncotarget, 2018. 9(35): p. 24140-24154.
Asghar, N., et al., Deep sequencing analysis of tick-borne encephalitis virus from questing ticks at natural foci reveals similarities between quasispecies pools of the virus. Journal of General Virology, 2017. 98(3): p. 413-421
Ben-Avraham, D., et al., The complex genetics of gait speed: genome-wide meta-analysis approach. Aging (Albany NY), 2017. 9(1): p. 209-246.
Bygdell, M., et al., The rise and the recent decline of childhood obesity in Swedish boys: the BEST cohort. Int J Obes (Lond), 2017.
Eriksson, J., et al., Causal relationship between obesity and serum testosterone status in men: A bi-directional mendelian randomization analysis. Plos One, 2017. 12(4).
Kariminejad, A., et al., TOR1A variants cause a severe arthrogryposis with developmental delay, strabismus and tremor. Neuromuscular Disorders, 2017. 27: p. S243-S243.
Ohlsson, C., et al., Low Serum DHEAS Predicts Increased Fracture Risk in Older Men - the MrOS Sweden Study. J Bone Miner Res, 2017.
Ohlsson, C., et al., BMI increase through puberty and adolescence is associated with risk of adult stroke. Neurology, 2017. 89(4): p. 363-369.
Orwoll, E.S., et al., The Limited Clinical Utility of Testosterone, Estradiol, and Sex Hormone Binding Globulin Measurements in the Prediction of Fracture Risk and Bone Loss in Older Men. J Bone Miner Res, 2017. 32(3): p. 633-640.
Robinson-Cohen, C., et al., Genetic Variants Associated with Circulating Parathyroid Hormone. J Am Soc Nephrol, 2016.
Szilagyi, Z., et al., Correction for Szilagyi et al., "Cyclin-Dependent Kinase 8 Regulates Mitotic Commitment in Fission Yeast". Mol Cell Biol, 2017. 37(17).
Tomic, T.T., et al., A new GTF2I-BRAF fusion mediating MAPK pathway activation in pilocytic astrocytoma. PLoS One, 2017. 12(4): p. e0175638.
Vandenput, L., et al., Low Testosterone, but Not Estradiol, Is Associated With Incident Falls in Older Men: The International MrOS Study. J Bone Miner Res, 2017
Vizlin-Hodzic, D., et al., Early onset of inflammation during ontogeny of bipolar disorder: the NLRP2 inflammasome gene distinctly differentiates between patients and healthy controls in the transition between iPS cell and neural stem cell stages. Transl Psychiatry, 2017. 7(1): p. e1010.
Asghar, N., et al., The role of the poly(A) tract in the replication and virulence of tick-borne encephalitis virus. Sci Rep, 2016. 6: p. 39265.
Banyai, G., et al., Cdk1 activity acts as a quantitative platform for coordinating cell cycle progression with periodic transcription. Nat Commun, 2016. 7: p. 11161.
Bhadury, J., et al., Hypoxia-regulated gene expression explains differences between melanoma cell line-derived xenografts and patient-derived xenografts. Oncotarget, 2016. 7(17): p. 23801-23811.
Carlsten, J.O., et al., Loss of the Mediator subunit Med20 affects transcription of tRNA and other non-coding RNA genes in fission yeast. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 2016. 1859(2): p. 339-347.
Fransson, S., et al., Estimation of copy number aberrations: Comparison of exome sequencing data with SNP microarrays identifies homozygous deletions of 19q13.2 and CIC in neuroblastoma. Int J Oncol, 2016. 48(3): p. 1103-16.
Joydeep Bhadury, L.M.N., Marcela D López, Jonas A Nilsson. Trp53 mutational status correlates with tumorigenicity in TRAMP-C mouse prostate cancer cell lines. Science Matters 2016 Aug 30th, 2016.
Kariminejad, A., et al., Truncating CHRNG mutations associated with interfamilial variability of the severity of the Escobar variant of multiple pterygium syndrome. BMC Genet, 2016. 17(1): p. 71.
Kariminejad, A., et al., Lethal multiple pterygium syndrome, the extreme end of the RYR1 spectrum. BMC Musculoskelet Disord, 2016. 17: p. 109.
Langen, B., et al., Microarray Studies on 211At Administration in BALB/c Nude Mice Indicate Systemic Effects on Transcriptional Regulation in Non-Thyroid Tissues. J Nucl Med, 2016.
Langen, B., et al., Non-targeted transcriptomic effects upon thyroid irradiation: similarity between in-field and out-of-field responses varies with tissue type. Sci Rep, 2016. 6: p. 30738.
Nielson, C.M., et al., Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2. Journal of Bone and Mineral Research, 2016. 31(12): p. 2085-2097.
Ohlsson, C., et al., Association between excessive BMI increase during puberty and risk of cardiovascular mortality in adult men: a population-based cohort study. Lancet Diabetes Endocrinol, 2016. 4(12): p. 1017-1024.
Olafsdottir, T.A., et al., Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants. Sci Rep, 2016. 6: p. 39097.
Orwoll, E.S., et al., The Limited Clinical Utility of Testosterone, Estradiol, and Sex Hormone Binding Globulin Measurements in the Prediction of Fracture Risk and Bone Loss in Older Men. J Bone Miner Res, 2016.
Rohlin, A., et al., GREM1 and POLE variants in hereditary colorectal cancer syndromes. Genes, Chromosomes and Cancer, 2016. 55(1): p. 95-106.
Teumer, A., et al., Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits. Aging Cell, 2016. 15(5): p. 811-24.
Truve, K., et al., Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus. PLoS Genet, 2016. 12(5): p. e1006000.
Carlsten, J.O., et al., Loss of the Mediator subunit Med20 affects transcription of tRNA and other non-coding RNA genes in fission yeast. Biochim Biophys Acta, 2015.
Ek, C.J., et al., Transcriptomal changes and functional annotation of the developing non-human primate choroid plexus. Front Neurosci, 2015. 9: p. 82.
Ek, C.J., et al., Expression of tight junction proteins and transporters for xenobiotic metabolism at the blood-CSF barrier during development in the nonhuman primate (P. hamadryas). Reprod Toxicol, 2015. 56: p. 32-44.
Fransson, S., et al., Intragenic anaplastic lymphoma kinase (ALK) rearrangements: Translocations as a novel mechanism of ALK activation in neuroblastoma tumors. Genes Chromosomes Cancer, 2015. 54(2): p. 99-109.
Jemt, E., et al., Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element. Nucleic Acids Res, 2015.
Kling, T., et al., Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content. Nucleic Acids Res, 2015. 43(15): p. e98.
Lunavat, T.R., et al., Small RNA deep sequencing discriminates subsets of extracellular vesicles released by melanoma cells - Evidence of unique microRNA cargos. RNA Biol, 2015. 12(8): p. 810-23.
Odin, E., et al., Expression of Folate Pathway Genes in Stage III Colorectal Cancer Correlates with Recurrence Status Following Adjuvant Bolus 5-FU-Based Chemotherapy. Mol Med, 2015. 21(1): p. 597-604.
Banyai, G., et al., Mediator can regulate mitotic entry and direct periodic transcription in fission yeast. Mol Cell Biol, 2014.
Einarsdottir, B.O., et al., Melanoma patient-derived xenografts accurately model the disease and develop fast enough to guide treatment decisions. Oncotarget, 2014. 5(20): p. 9609-18.
Jabbar, K.S., et al., Proteomic mucin profiling for the identification of cystic precursors of pancreatic cancer. J Natl Cancer Inst, 2014. 106(2): p. djt439.
Kalliopi Sofou, et al., Whole exome sequencing reveals mutations in NARS2 and PARS2, encoding the mitochondrial asparaginyl-tRNA synthetase and prolyl-tRNA synthetase, in patients with Alpers syndrome. Molecular Genetics & Genomic Medicine 2014. 3(1): p. 59-68.
Rohlin, A., et al., A mutation in POLE predisposing to a multi-tumour phenotype. Int J Oncol, 2014. 45(1): p. 77-81.
Bhadury, J., et al., Identification of tumorigenic and therapeutically actionable mutations in transplantable mouse tumor cells by exome sequencing. Oncogenesis, 2013. 2: p. e44.
Djos, A., et al., Aneuploidy in neuroblastoma tumors is not associated with inactivating point mutations in the STAG2 gene. BMC Med Genet, 2013. 14: p. 102.
Nilsson, J., et al., Polyglucosan body myopathy caused by defective ubiquitin ligase RBCK1. Ann Neurol, 2013.
Terzioglu, M., et al., MTERF1 Binds mtDNA to Prevent Transcriptional Interference at the Light-Strand Promoter but Is Dispensable for rRNA Gene Transcription Regulation. Cell Metab, 2013. 17(4): p. 618-26.
Carlsten, J.O., et al., Mediator promotes CENP-a incorporation at fission yeast centromeres. Mol Cell Biol, 2012. 32(19): p. 4035-43.
Estrada, K., et al., Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Nat Genet, 2012. 44(5): p. 491-501.
Medina-Gomez, C., et al., Meta-analysis of genome-wide scans for total body BMD in children and adults reveals allelic heterogeneity and age-specific effects at the WNT16 locus. PLoS Genet, 2012. 8(7): p. e1002718.
Szilagyi, Z., et al., Cyclin-dependent kinase 8 regulates mitotic commitment in fission yeast. Mol Cell Biol, 2012. 32(11): p. 2099-109.
Zheng, H.F., et al., WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk. PLoS Genet, 2012. 8(7): p. e1002745.
Abel, F., et al., A 6-gene signature identifies four molecular subgroups of neuroblastoma. Cancer Cell Int, 2011. 11: p. 9.
Caren, H., et al., Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma. BMC Cancer, 2011. 11: p. 66.
Ohlsson, C., et al., Genetic determinants of serum testosterone concentrations in men. PLoS Genet, 2011. 7(10): p. e1002313.
Zhu, X., et al., Histone modifications influence mediator interactions with chromatin. Nucleic Acids Res, 2011. 39(19): p. 8342-54.