University of Gothenburg

Research publications

The scientific output from our members creates the foundation for the activities at the centre. It is important that information spread concerning biodiversity, the threats against it and possible solutions has a strong scientific foundation. Together we not only explore and discover new things about biodiversity, we also share it in the scientific community as well as to the general public.

2021

Alström P, Rasmussen PC, Xia C, Zhang L, Liu C, Magnusson J, Shafaeipour A, Olsson U. Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species. The Auk: Ornithological Advances 2021;138(2):ukab014

Alström P, Van Linschooten J, Donald PF, Sundev G, Mohammadi Z, Ghorbani F, Shafaeipour A, Van Den Berg A, Robb M, Aliabadian M, Wei C, Lei F, Oxelman B, Olsson U. Multiple species delimitation approaches applied to the avian lark genus Alaudala. Molecular Phylogenetics and Evolution 2021;154:106994

Alves RRN, Borges AKM, Barboza RRD, Souto WMS, Gonçalves‐Souza T, Provete DB, Albuquerque UP. A global analysis of ecological and evolutionary drivers of the use of wild mammals in traditional medicine. Mammal Review 2021;51(2):293-306

Andermann T, Faurby S, Cooke R, Silvestro D, Antonelli A. iucn_sim: a new program to simulate future extinctions based on IUCN threat status. Ecography 2021;44(2):162-76

Antonelli A. The rise and fall of Neotropical biodiversity. Botanical Journal of the Linnean Society 2021;XX:1-17 or boab061

Antonelli A, Clarkson JJ, Kainulainen K, Maurin O, Brewer GE, Davis AP, Epitawalage N, Goyder DJ, Livshultz T, Persson C, Pokorny L, Straub SCK, Struwe L, Zuntini AR, Forest F, Baker WJ. Settling a family feud: a high-level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes. American Journal of Botany 2021;108(7):1143-65

Apostolou A, Velkov B, Green L. The first record of the invasive round goby Neogobius melanostomus in the Aegean Basin, Bulgaria. Journal of Applied Ichthyology 2021;00:1-4

Azevedo JaR, De C. Nogueira C, Antonelli A, Faurby S. Contrasting patterns of phylogenetic turnover in amphibians and reptiles are driven by environment and geography in Neotropical savannas. Journal of Biogeography 2021;48(8):2008-21

Bacon CD, Gutiérrez-Pinto N, Flantua S, Castellanos Suárez D, Jaramillo C, Pennington RT, Antonelli A. The seasonally dry tropical forest species Cavanillesia chicamochae has a middle Quaternary origin. Biotropica 2021;00(n/a):1-9

Bacon CD, Roncal J, Andermann T, Barnes CJ, Balslev H, Gutiérrez-Pinto N, Morales H, Núñez-Avelleneda LA, Tunarosa N, Antonelli A. Genomic and niche divergence in an Amazonian palm species complex. Botanical Journal of the Linnean Society 2021;197(4):498-512

Batson J, Dudas G, Haas-Stapleton E, Kistler AL, Li LM, Logan P, Ratnasiri K, Retallack H. Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay. eLife 2021;10:e68353

Baucon A, Carvalho CND, Felletti F, Tosadori G, Antonelli A. Small-world dynamics drove Phanerozoic divergence of burrowing behaviors. Geology 2021;49(6):748-52

Bellanger J-M, Lebeuf R, Sesli E, Loizides M, Schwarz C, Moreau P-A, Liimatainen K, Larsson E. Hygrophorus sect. Olivaceoumbrini: new boundaries, extended biogeography and unexpected diversity unravelled by transatlantic studies. Persoonia-Molecular Phylogeny and Evolution of Fungi 2021;46(1):272-312

Bjorkman AD, Wulff A. A reflection on four impactful Ambio papers: The biotic perspective. Ambio 2021;50(6):1145-49

Bogotá-Ángel G, Huang H, Jardine PE, Chazot N, Salamanca S, Banks H, Pardo-Trujillo A, Plata A, Dueñas H, Star W, Langelaan R, Eisawi A, Umeji OP, Enuenwemba LO, Parmar S, Da Silveira RR, Lim JY, Prasad V, Morley RJ, Bacon CD, Hoorn C. Climate and geological change as drivers of Mauritiinae palm biogeography. Journal of Biogeography 2021;48(5):1001-22

Buschke FT, Hagan JG, Santini L, Coetzee BWT. Random population fluctuations bias the Living Planet Index. Nature Ecology & Evolution2021;5(8):1145-52

Carrillo-Briceño JD, Sánchez R, Scheyer TM, Carrillo JD, Delfino M, Georgalis GL, Kerber L, Ruiz-Ramoni D, Birindelli JLO, Cadena E-A, Rincón AF, Chavez-Hoffmeister M, Carlini AA, Carvalho MR, Trejos-Tamayo R, Vallejo F, Jaramillo C, Jones DS, Sánchez-Villagra MR. A Pliocene–Pleistocene continental biota from Venezuela. Swiss Journal of Palaeontology 2021;140(1):9

Carvalho MR, Jaramillo C, Parra FDL, Caballero-Rodríguez D, Herrera F, Wing S, Turner BL, D’apolito C, Romero-Báez M, Narváez P, Martínez C, Gutierrez M, Labandeira C, Bayona G, Rueda M, Paez-Reyes M, Cárdenas D, Duque Á, Crowley JL, Santos C, Silvestro D. Extinction at the end-Cretaceous and the origin of modern Neotropical rainforests. Science 2021;372(6537):63-68

Cássia-Silva C, Freitas CG, Jardim L, Bacon CD, Collevatti RG. In situ radiation explains the frequency of dioecious palms on islands. Annals of Botany 2021;128(2):205-15

Cavender JC, Landolt JC, Vadell EM, Perrigo AL, Stephenson SL, De Basanta DW, Lado C, Liu P. Distribution and ecology of dictyostelids in Madagascar. Phytotaxa 2021;505(2):176-86

Ceron K, Mângia S, Guedes TB, Alvares DJ, Neves MO, De Toledo Moroti M, Torello N, Borges-Martins M, Ferreira VL, Santana DJ. Ecological niche explains the sympatric occurrence of lined ground snakes of the genus Lygophis (Serpentes, Dipsadidae) in the South American dry diagonal. Herpetologica 2021;77(3):239-48

Chazot N, Condamine FL, Dudas G, Peña C, Kodandaramaiah U, Matos-Maraví P, Aduse-Poku K, Elias M, Warren AD, Lohman DJ, Penz CM, Devries P, Fric ZF, Nylin S, Müller C, Kawahara AY, Silva-Brandão KL, Lamas G, Kleckova I, Zubek A, Ortiz-Acevedo E, Vila R, Vane-Wright RI, Mullen SP, Jiggins CD, Wheat CW, Freitas AVL, Wahlberg N. Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies. Nature Communications 2021;12(1):5717

Cowell C, Paton A, Borrell JS, Williams C, Wilkin P, Antonelli A, Baker WJ, Buggs R, Fay MF, Gargiulo R, Grace OM, Kuhnhäuser BG, Woudstra Y, Kersey PJ. Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections. Plants, People, Planet 2021;4:33-43

Crous PW, Cowan DA, …, Larsson E, …, Jeppson M, …, Groenewald JZ. Fungal Planet description sheets: 1182–1283. Persoonia - Molecular Phylogeny and Evolution of Fungi 2021;46(1):313-528

Crous PW, Lombard L, …, Nilsson RH, …, Thines M. Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology2021;98:100116

Crous PW, Osieck ER, …, Larsson E, …, Vieira BS, Groenewald JZ. Fungal Planet description sheets: 1284–1382. Persoonia - Molecular Phylogeny and Evolution of Fungi 2021;47(1):178-374

Daru BH, Davies TJ, Willis CG, Meineke EK, Ronk A, Zobel M, Pärtel M, Antonelli A, Davis CC. Widespread homogenization of plant communities in the Anthropocene. Nature communications 2021;12(1):1-10

Day LB, Helmhout W, Pano G, Olsson U, Hoeksema JD, Lindsay WR. Correlated evolution of acrobatic display and both neural and somatic phenotypic traits in manakins (Pipridae). Integrative and Comparative Biology 2021;61(4):1343-62

De Meiras-Ottoni A, Larsson K-H, Gibertoni TB. Additions to Trechispora and the status of Scytinopogon (Trechisporales, Basidiomycota). Mycological Progress 2021;20(2):203-22

Di Sacco A, Hardwick KA, Blakesley D, Brancalion PHS, Breman E, Cecilio Rebola L, Chomba S, Dixon K, Elliott S, Ruyonga G, Shaw K, Smith P, Smith RJ, Antonelli A. Ten golden rules for reforestation to optimize carbon sequestration, biodiversity recovery and livelihood benefits. Global Change Biology 2021;27(7):1328-48

Dima B, Brandrud TE, Corriol G, Jansen GM, Jordal JB, Khalid AN, Larsson E, Lorås J, Morozova OV, Naseer A, Noordeloos ME, Rossi W, Santamaria S, Sarwar S, Sesli E, Usman M, Afshan NS, Ahmad I, Banerjee A, Banerjee K, Bendiksen E, Rodrigues Da Silva Colombo DB, De Kesel A, Dovana F, Ferisin G, Hussain S, Islam S, Jesus AL, Kaygusuz OU, Krisai-Greilhuber I, Mahammad S, Mishra DK, Partha Sarathi Nath16, De Oliveira Da PaixãO SC, Panja B, Papp V, Amorim Pires-Zottarelli CL, RadnóTi AG, Rana D, Saha R, TüRkekul I, Haelewaters D. Fungal systematics and evolution: FUSE 7. Sydowia 2021;73:271-340

Dudas G, Hong SL, …, Baele G. Preprint: Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nature Communications 2021;12(1):5769

Dudas G, Huber G, Wilkinson M, Yllanes D. Polymorphism of genetic ambigrams. Virus Evolution 2021;7(1):veab038

Dusenge ME, Wittemann M, Mujawamariya M, Ntawuhiganayo EB, Zibera E, Ntirugulirwa B, Way DA, Nsabimana D, Uddling J, Wallin G. Limited thermal acclimation of photosynthesis in tropical montane tree species. Global Change Biology 2021;27(19):4860-78

Edler D, Klein J, Antonelli A, Silvestro D. raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 2021;12(2):373-77

Entiauspe-Neto OM, Koch C, Gray RJ, Tiutenko A, Loebmann D, Guedes TB. Taxonomic status of Apostolepis tertulianobeui Lema, 2004 based on an integrative revision of Apostolepis assimilis (Reinhardt, 1861) (Serpentes: Dipsadidae). Zoologischer Anzeiger 2021;291:123-38

Entiauspe-Neto OM, Koch C, Harvey MB, Colli GR, Guedes TB. Redescription of Apostolepis ambiniger (Peters, 1869) (Serpentes: Dipsadidae: Elapomorphini). Vertebrate Zoology 2021;71:231-51

Entiauspe-Neto OM, Rangel GFM, Guedes TB, Tiutenko A. Raising of Lazarus: Rediscovery and redescription of Apostolepis niceforoiAmaral, 1935 (Serpentes: Dipsadidae: Elapomorphini). Holotipus;1(1)

Eriksson JS, Bacon CD, Bennett DJ, Pfeil BE, Oxelman B, Antonelli A. Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae). BMC Ecology and Evolution 2021;21(1):107

Farage C, Edler D, Eklöf A, Rosvall M, Pilosof S. Identifying flow modules in ecological networks using Infomap. Methods in Ecology and Evolution 2021;12(5):778-86

Farooq H, Bero C, Guilengue Y, Elias C, Massingue Y, Mucopote I, Nanvonamuquitxo C, Marais J, Antonelli A, Faurby S. Species perceived to be dangerous are more likely to have distinctive local names. Journal of ethnobiology and ethnomedicine 2021;17(1):1-11

Faurby S, Morlo M, Werdelin L. CarniFOSS: A database of the body mass of fossil carnivores. Global Ecology and Biogeography2021;30(10):1958-64

Ferreira PDL, Antonelli A, Groppo M. Touch me carefully: a step towards understanding morphological diversity in the South American spiny sunflowers (Compositae, Barnadesioideae). Phytotaxa 2021;518(2):109-42

Filho GA, Marco F, Washington L, Geraldo Jorge B, Thais Barreto G, Frederico Gustavo Rodrigues F. The snake fauna of the most threatened region of the Atlantic Forest: natural history, distribution, species richness and a complement to the Atlas of Brazilian Snakes. Ethnobiology and Conservation 2021;10(0):n/a

Freitas C, Brum FT, Silva CC, Maracahipes L, Carlucci M, Collevatti R, Bacon CD. Incongruent spatial distribution of taxonomic, phylogenetic, and functional diversity in Neotropical Cocoseae palms. Frontiers in Forests and Global Change 2021;4:739468

G. Ribeiro P, Torres Jiménez MF, Andermann T, Antonelli A, Bacon CD, Matos-Maraví P. A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics. Molecular Ecology 2021;30(n/a):6021–35

Ghobad-Nejhad M, Langer E, Nakasone K, Diederich P, Nilsson RH, Rajchenberg M, Ginns J. Digging up the roots: Taxonomic and phylogenetic disentanglements in Corticiaceae s.s. (Corticiales, Basidiomycota) and evolution of nutritional modes. Frontiers in Microbiology2021;12: 704802:see volume

Gonzalez RC, Guedes TB, Passos P. Back in time to unlock the future: tracing the type-specimens of Corallus hortulana (Linnaeus, 1758) (Serpentes: Boidae), with designation of a lectotype for the Amazon tree boa. Zootaxa 2021;4941(2):259–70

Grace OM, Pérez-Escobar OA, Lucas EJ, Vorontsova MS, Lewis GP, Walker BE, Lohmann LG, Knapp S, Wilkie P, Sarkinen T, Darbyshire I, Lughadha EN, Monro A, Woudstra Y, Demissew S, Muasya AM, Díaz S, Baker WJ, Antonelli A. Botanical monography in the Anthropocene. Trends in Plant Science 2021;26(5):433-41

Green L, Apostolou A, Faust E, Palmqvist K, Behrens JW, Havenhand JN, Leder EH, Kvarnemo C. Ancestral sperm ecotypes reveal multiple Invasions of a non-native fish in Northern Europe. Cells 2021;10(7):1743

Green L, Niemax J, Herrmann J-P, Temming A, Behrens JW, Havenhand JN, Leder E, Kvarnemo C. Sperm performance limits the reproduction of an invasive fish in novel salinities. Diversity and Distributions 2021;27(6):1091-105

Guedes TB. A Matryoshka of scales: a single specimen reveals multiple new aspects of diet and distribution of snakes. Herpetology Notes2021;14:385-90

Gunton LM, Kupriyanova EK, Alvestad T, Avery L, Blake JA, Biriukova O, Böggemann M, Borisova P, Budaeva N, Burghardt I, Capa M, Georgieva MN, Glasby CJ, Hsueh P-W, Hutchings P, Jimi N, Kongsrud JA, Langeneck J, Meißner K, Murray A, Nikolic M, Paxton H, Ramos D, Schulze A, Sobczyk R, Watson C, Wiklund H, Wilson RS, Zhadan A, Zhang J. Annelids of the eastern Australian abyss collected by the 2017 RV ‘Investigator’voyage. ZooKeys 2021;1020:1-198

Gustafson A, Miller PA, Björk R, Olin S, Smith B. Nitrogen restricts future treeline advance in the sub-arctic. Biogeosciences Discussions2021;2021:1-26

Gustafsson ALS, Gussarova G, Borgen L, Ikeda H, Antonelli A, Marie-Orleach L, Rieseberg LH, Brochmann C. Rapid evolution of post-zygotic reproductive isolation is widespread in Arctic plant lineages. Annals of Botany 2021;XX:1-14

Hagan JG, Vanschoenwinkel B, Gamfeldt L. We should not necessarily expect positive relationships between biodiversity and ecosystem functioning in observational field data. Ecology Letters 2021;24(12):2537-48

Hannus S, Hirons A, Baxter T, Mcallister HA, Wiström B, Sjöman H. Intraspecific drought tolerance of Betula pendula genotypes: an evaluation using leaf turgor loss in a botanical collection. Trees 2021;35(2):569-81

He L, Lipson DA, Mazza Rodrigues JL, Mayes M, Björk RG, Glaser B, Thornton P, Xu X. Dynamics of fungal and bacterial biomass carbon in natural ecosystems: site-level applications of the CLM-Microbe model. Journal of Advances in Modeling Earth Systems2021;13(2):e2020MS002283

Hellquist A, Friberg F, Haldén P, Schmidt P, Ma M, Jun G, Olsson U, Alström P. Taxonomic status of grey-headed Yellow Wagtails breeding in western China. Avian Research 2021;12(1):1-10

Henniges MC, Powell RF, Mian S, Stace CA, Walker K, Gornall RJ, Christenhusz MJ, Brown M, Twyford AD, Hollingsworth PM, Jones L, De Vere N, Antonelli A, Leitch AR, Leitch IJ. A taxonomic, genetic and ecological data resource for the vascular plants of Britain and Ireland. Scientific Data 2021;9:1-8

Hestetun JT, Lanzén A, Skaar KS, Dahlgren TG. The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity. Environmental DNA 2021;3(5):997-1006

Jones DOB, Simon-Lledó E, Amon DJ, Bett BJ, Caulle C, Clément L, Connelly DP, Dahlgren TG, Durden JM, Drazen JC, Felden J, Gates AR, Georgieva MN, Glover AG, Gooday AJ, Hollingsworth AL, Horton T, James RH, Jeffreys RM, Laguionie-Marchais C, Leitner AB, Lichtschlag A, Menendez A, Paterson GLJ, Peel K, Robert K, Schoening T, Shulga NA, Smith CR, Taboada S, Thurnherr AM, Wiklund H, Young CR, Huvenne VaI. Environment, ecology, and potential effectiveness of an area protected from deep-sea mining (Clarion Clipperton Zone, abyssal Pacific). Progress in Oceanography 2021;197:102653

Jordal JB, Larsson E. Cuphophyllus atlanticus (Hygrophoraceae, Agaricales)—a new sister species to the North American C. canescens. Agarica 2021;42:39-48

Kessous I, Neves B, Salgueiro F, Costa A. A 100-million-year gap in the knowledge of the evolutionary history of Bromeliaceae: A brief review of fossil records. Feddes Repertorium 2021;132:20-27

Konarska J, Klingberg J, Lindberg F. Applications of dual-wavelength hemispherical photography in urban climatology and urban forestry. Urban Forestry & Urban Greening 2021;58:126964

Lücking R, Aime MC, Robbertse B, Miller AN, Aoki T, Ariyawansa HA, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, Hawksworth DL, Hyde KD, Irinyi L, Jeewon R, Johnston PR, Kirk PM, Malosso E, May TW, Meyer W, Nilsson HR, Öpik M, Robert V, Stadler M, Thines M, Vu D, Yurkov AM, Zhang N, Schoch CL. Fungal taxonomy and sequence-based nomenclature. Nature Microbiology 2021;6(5):540-48

Lugosi G, Truszkowski J, Velona V, Zwiernik P. Learning partial correlation graphs and graphical models by covariance queries. Journal of Machine Learning Research 2021;22(203):1-41

Marques R, Guedes TB, Lanna FM, Passos DC, Silva WPD, Garda AA. Species richness and distribution patterns of the snake fauna of Rio Grande do Norte state, northeastern Brazil. Anais da Academia Brasileira de Ciências 2021;93:e20191265

Martinsson S, Malmberg K, Bakken T, Korshunova T, Martynov A, Lundin K. Species delimitation and phylogeny of Doto (Nudibranchia: Dotidae) from the Northeast Atlantic, with a discussion on food specialization. Journal of Zoological Systematics and Evolutionary Research2021;59:1754–74

Matos-Maraví P, Wahlberg N, Freitas AVL, Devries P, Antonelli A, Penz CM. Mesoamerica is a cradle and the Atlantic Forest is a museum of Neotropical butterfly diversity: insights from the evolution and biogeography of Brassolini (Lepidoptera: Nymphalidae). Biological Journal of the Linnean Society 2021;133(3):704-24

Messas YF, D’angelo GB, Guedes TB, Vasconcellos-Neto J. Integrating citizen nature photography to natural history science: New record of bird-lizard predation. Austral Ecology 2021;n/a(n/a)

Middleton O, Svensson H, Scharlemann JPW, Faurby S, Sandom C. CarniDIET 1.0: A database of terrestrial carnivorous mammal diets. Global Ecology and Biogeography 2021;30(6):1175-82

Midolo G, Wellstein C, Faurby S. Individual fitness is decoupled from coarse-scale probability of occurrence in North American trees. Ecography 2021;44(5):789-801

Moiloa NA, Mesbah M, Nylinder S, Manning J, Forest F, De Boer HJ, Bacon CD, Oxelman B. Biogeographic origins of southern African Silene (Caryophyllaceae). Molecular Phylogenetics and Evolution 2021;162:107199

Molino S, Sundue M, Testo W. First record of sporangiasters in the Blechnaceae. American Fern Journal 2021;111(3):196-204

Narváez-Gómez JP, Guedes TB, Lohmann LG. Recovering the drivers of sampling bias in Bignonieae (Bignoniaceae) and identifying priority areas for new survey efforts. Biodiversity and Conservation 2021;30(8):2319-39

Neubauer TA, Hauffe T, Silvestro D, Schauer J, Kadolsky D, Wesselingh FP, Harzhauser M, Wilke T. Current extinction rate in European freshwater gastropods greatly exceeds that of the late Cretaceous mass extinction. Communications Earth & Environment 2021;2(1):article number 97

Nitare J, Ainsworth AM, Larsson E, Parfitt D, Suz LM, Svantesson S, Larsson KH. Four new species of Hydnellum (Thelephorales, Basidiomycota) with a note on Sarcodon illudens. Fungal systematics and evolution 2021;7:233-54

Noordeloos ME, Lorås J, Eidissen SE, Brandrud TE, Bendiksen E, Morozova O, Weholt JBJØ, Jansen GM, Larsson E, Dima B. Three new Entoloma species of the Cyanula clade from (sub) alpine habitats in Northern Norway and Sweden. Sydowia 2021;73:185-96

Parooq H, Uetz P. Can we identify European snakes by color patterns? SALAMANDRA 2021;57(4):520-28

Pautienius A, Dudas G, Simkute E, Grigas J, Zakiene I, Paulauskas A, Armonaite A, Zienius D, Slyzius E, Stankevicius A. Bulk milk tank samples are suitable to assess circulation of tick-borne encephalitis virus in high endemic Areas. Viruses 2021;13(9):1772

Pérez-Escobar OA, Bellot S, Przelomska NaS, Flowers JM, Nesbitt M, Ryan P, Gutaker RM, Gros-Balthazard M, Wells T, Kuhnhäuser BG, Schley R, Bogarín D, Dodsworth S, Diaz R, Lehmann M, Petoe P, Eiserhardt WL, Preick M, Hofreiter M, Hajdas I, Purugganan M, Antonelli A, Gravendeel B, Leitch IJ, Torres Jiménez MF, Papadopulos AST, Chomicki G, Renner SS, Baker WJ. Molecular clocks and archeogenomics of a late period Egyptian date palm leaf reveal introgression from wild relatives and add timestamps on the domestication. Molecular Biology and Evolution 2021;38(10):4475-92

Pirnay J-P, Selhorst P, Hong SL, Cochez C, Potter B, Maes P, Petrillo M, Dudas G, Claes V, Van Der Beken Y, Verbeken G, Degueldre J, Dellicour S, Cuypers L, T’sas F, Van Den Eede G, Verhasselt B, Weuts W, Smets C, Mertens J, Geeraerts P, Ariën KK, André E, Neirinckx P, Soentjens P, Baele G. Variant analysis of SARS-CoV-2 genomes from Belgian military personnel engaged in overseas missions and operations. Viruses 2021;13(7):1359

Pleijel H, Klingberg J, Nerentorp M, Broberg MC, Nyirambangutse B, Munthe J, Wallin G. Mercury accumulation in leaves of different plant types–the significance of tissue age and specific leaf area. Biogeosciences Discussions 2021:1-27

Põlme S, Abarenkov K, Henrik Nilsson R, …, Larsson K-H, …, Tedersoo L. Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity 2021;107(1):129-32

Pomar-Gómez AD, Cordeiro P, Guedes TB, Passos P. The striking endemism pattern of the species-richest snake genus Atractus(Dipsadidae: Serpentes) highlights the hidden diversity in the Andes. Amphibia-Reptilia 2021;42(2):189-200

Ramseyer TN, Tronholm A, Turner T, Brandt ME, Smith TB. Elevated nutrients and herbivory negatively affect Dictyota growth dynamics. Marine Ecology Progress Series 2021;671:81-95

Ribeiro CV, Oliveira LP, Batista R, De Sousa M. UCEasy: A software package for automating and simplifying the analysis of ultraconserved elements (UCEs). Biodiversity Data Journal 2021;9:e78132

Richards C, Cooke RSC, Bates AE. Biological traits of seabirds predict extinction risk and vulnerability to anthropogenic threats. Global Ecology and Biogeography 2021;30(5):973-86

Richling I, Von Proschwitz T. Identification problems of travelling snail species—new exotic introductions to tropical greenhouses in Gothenburg, Sweden (Gastropoda: Achatinellidae, Strobilopsidae, Helicarionidae). PeerJ 2021;9:e11185

Ritter CD, Forster D, Azevedo JaR, Antonelli A, Nilsson RH, Trujillo ME, Dunthorn M. Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding. Microbial Ecology 2021;82(3):746-60

Ritter CD, Ribas CC, Menger J, Borges SH, Bacon CD, Metzger JP, Bates J, Cornelius C. Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird. Landscape Ecology 2021;36(9):2565-82

Rojas-Morales JA, González JV, Cepeda-Duque JC, Marín-Martínez M, Díaz-Ayala RF, Guedes TB. On delicate night hunters: observations of the feeding behaviour of Imantodes cenchoa (Linnaeus, 1758) and Sibon nebulatus (Linnaeus, 1758) through staged and natural encounters (Serpentes: Dipsadidae: Dipsadinae). Herpetology Notes 2021;14:717-23

Prevéy JS, Elmendorf SC, Bjorkman A, Alatalo JM, Ashton I, Assmann JJ, Björk RG, Björkman MP, …, Yang Y. The tundra phenology database: more than two decades of tundra phenology responses to climate change. Arctic Science 2021;0(0):1-14

Sangster G, Alström P, Gaudin J, Olsson U. A new genus for the White-tailed Flycatcher Cyornis concretus (Aves: Muscicapidae). Zootaxa2021;5072(6):599-600

Santana A, Silva SM, Batista R, Sampaio I, Aleixo A. Molecular systematics, species limits, and diversification of the genus Dendrocolaptes(Aves: Furnariidae): Insights on biotic exchanges between dry and humid forest types in the Neotropics. Journal of Zoological Systematics and Evolutionary Research 2021;59(1):277-93

Sayol F, Cooke RSC, Pigot AL, Blackburn TM, Tobias JA, Steinbauer MJ, Antonelli A, Faurby S. Loss of functional diversity through anthropogenic extinctions of island birds is not offset by biotic invasions. Science Advances 2021;7(46):eabj5790

Scharn R, Brachmann CG, Patchett A, Reese H, Bjorkman AD, Alatalo JM, Björk RG, Jägerbrand AK, Molau U, Björkman MP. Vegetation responses to 26 years of warming at Latnjajaure Field Station, northern Sweden. Arctic Science 2021;0(0):1-20

Scharn R, Little CJ, Bacon CD, Alatalo JM, Antonelli A, Björkman MP, Molau U, Nilsson RH, Björk RG. Decreased soil moisture due to warming drives phylogenetic diversity and community transitions in the tundra. Environmental Research Letters 2021:To cite this article: Ruud Scharn et al 2021 Environ. Res. Lett. 16 064031

Schneider JV, Jungcurt T, Cardoso D, Amorim AM, Töpel M, Andermann T, Poncy O, Berberich T, Zizka G. Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa. Taxon 2021;70(1):48-71

Serna-Sánchez MA, Pérez-Escobar OA, Bogarín D, Torres Jiménez MF, Alvarez-Yela AC, Arcila-Galvis JE, Hall CF, De Barros F, Pinheiro F, Dodsworth S, Chase MW, Antonelli A, Arias T. Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution. Scientific Reports 2021;11(1):6858

Silvestro D, Bacon C, Ding W-N, Zhang Q, Donoghue P, Antonelli A, Xing Y. Fossil data support a pre-Cretaceous origin of flowering plants. Nature Ecology & Evolution 2021;5:449–57

SjöMan H, Levinsson A, Emilsson T, Ibrahimova A, Alizade V, Douglas P, WiströM BR. Evaluation of Alnus subcordata for urban environments through assessment of drought and flooding tolerance. Dendrobiology 2021;85:39–50

Soininen EM, Barrio IC, Bjørkås R, Björnsdóttir K, Ehrich D, Hopping KA, Kaarlejärvi E, Kolstad AL, Abdulmanova S, Björk RG, Bueno CG, Eischeid I, Finger-Higgens R, Forbey JS, Gignac C, Gilg O, Den Herder M, Holm HS, Hwang BC, Jepsen JU, Kamenova S, Kater I, Koltz AM, Kristensen JA, Little CJ, Macek P, Mathisen KM, Metcalfe DB, Mosbacher JB, Mörsdorf M, Park T, Propster JR, Roberts AJ, Serrano E, Spiegel MP, Tamayo M, Tuomi MW, Verma M, Vuorinen KEM, Väisänen M, Van Der Wal R, Wilcots ME, Yoccoz NG, Speed JDM. Location of studies and evidence of effects of herbivory on Arctic vegetation: a systematic map. Environmental Evidence 2021;10(1):25

Spirin V, Malysheva V, Schoutteten N, Viner I, Miettinen O, Nordén J, Ryvarden L, Kotiranta H, Verbeken A, Weiß M, Larsson K-H. Studies in the Basidiodendron caesiocinereum complex (Auriculariales, Basidiomycota). Mycological Progress 2021;20(10):1275-96

Spirin V, Volobuev S, Malysheva V, Miettinen O, Kotiranta H, Larsson K-H. Identity of the subalpine – subarctic corticiod fungus Megalocystidium leucoxanthum (Russulales, Basidiomycota) and six related species. Plant Ecology and Evolution2021;154(2):231–244. 

Spirin V, Volobuev S, Viner I, Miettinen O, Vlasák J, Schoutteten N, Motato-Vásquez V, Kotiranta H, Hernawati, Larsson K-H. On Sistotremastrum and similar-looking taxa (Trechisporales, Basidiomycota). Mycological Progress 2021;20(4):453-76

Suissa JS, Sundue MA, Testo WL. Mountains, climate and niche heterogeneity explain global patterns of fern diversity. Journal of Biogeography 2021;48(6):1296-308

Sulistyo BP, Larsson K-H, Haelewaters D, Ryberg M. Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov. Fungal Biology 2021;125(3):239-55

Svantesson S, Kõljalg U, Wurzbacher C, Saar I, Larsson K-H, Larsson E. Polyozellus vs. Pseudotomentella: generic delimitation with a multi-gene dataset. Fungal Systematics and Evolution 2021;12:143-54

Svantesson S, Larsson K-H, Larsson E. Pseudotomentella badjelanndana, Pseudotomentella sorjusensis and Tomentella viridibasidia—three new corticioid Thelephorales species from the Scandes Mountains. Phytotaxa 2021;497(2):61-78

Tedersoo L, Mikryukov V, …, Gryzenhout M, Bauters M, Bálint M, Wijayawardene N, Hagh-Doust N, Yorou NS, Kurina O, Mortimer PE, Meidl P, Nilsson RH, …, Abarenkov K. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity2021;111(1):573-88

Thompson CW, Phelps KL, Allard MW, Cook JA, Dunnum JL, Ferguson AW, Gelang M, Anwarali Khan FA, Paul DL, Reeder DM, Simmons NB, Vanhove MPM, Webala PW, Weksler M, Kilpatrick CW, Prasad VR. Preserve a voucher specimen! The critical need for integrating natural history collections in infectious disease studies. mBio 2021;12(1):e02698-20

Torres Jiménez MF, Prata E, Zizka A, Cohn-Haft M, De Oliveira AV, Emilio T, Chazot N, Couvreur TL, Kamga SM, Sonké B, Cano Á, G. CR, Kuhnhäuser BGB, William J. , Antonelli A, Bacon CD. Phylogenomics of the palm tribe Lepidocaryeae (Calamoideae: Arecaceae) and description of a new species of Mauritiella. Systematic Botany 2021;46(3):863-74

Vieira C, Steen F, D’hondt S, Bafort Q, Tyberghein L, Fernandez-García C, Wysor B, Tronholm A, Mattio L, Payri C, Kawai H, Saunders G, Leliaert F, Verbruggen H, De Clerck O. Global biogeography and diversification of a group of brown seaweeds (Phaeophyceae) driven by clade-specific evolutionary processes. Journal of Biogeography 2021;48(4):703-15

Von Oppen J, Normand S, Bjorkman AD, Blach-Overgaard A, Assmann JJ, Forchhammer M, Guéguen M, Nabe-Nielsen J. Annual air temperature variability and biotic interactions explain tundra shrub species abundance. Journal of Vegetation Science 2021;32(2):e13009

Watkins H, Hirons A, Sjöman H, Cameron R, Hitchmough JD. Can trait-based schemes be used to select species in urban forestry? Frontiers in Sustainable Cities 2021;3:21

Wietrzyk-Pełka P, Rola K, Patchett A, Szymański W, Węgrzyn MH, Björk RG. Patterns and drivers of cryptogam and vascular plant diversity in glacier forelands. Science of The Total Environment 2021;770:144793

Zapata S, Zapata-Henao M, Cardona A, Jaramillo C, Silvestro D, Oboh-Ikuenobe F. Long-term topographic growth and decay constrained by 3D thermo-kinematic modeling: Tectonic evolution of the Antioquia Altiplano, Northern Andes. Global and Planetary Change2021;203:103553

Zizka A, Antonelli A, Silvestro D. sampbias, a method for quantifying geographic sampling biases in species distribution data. Ecography2021;44(1):25-32

Zizka A, Rydén O, Edler D, Klein J, Perrigo A, Silvestro D, Jagers SC, Lindberg SI, Antonelli A. Bio-Dem, a tool to explore the relationship between biodiversity data availability and socio-political conditions in time and space. Journal of Biogeography2021;48(11):2715-26

Zizka A, Silvestro D, Vitt P, Knight TM. Automated conservation assessment of the orchid family with deep learning. Conservation Biology2021;35(3):897-908

Örstadius L., Larsson E., Psathyrella confundens (Psathyrellaceae, Agaricales) — a moist growing new species from Europe. Agarica2021;42:31-38

 

Preprints:

Andermann T, Strömberg C, Antonelli A, Silvestro D. The evolution of open habitats in North America revealed by deep learning models. bioRxiv 2021:2021.09.03.458822

Antonelli A, Goria S, Sterner T, Silvestro D. Optimising biodiversity protection through artificial intelligence. bioRxiv2021:2021.04.13.439752

Bredin YK, Hess LL, Scabin AB, Dunthorn M, Haugaasen T, Peres CA, Nilsson HR, Antonelli A, Ritter CD. Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia, Brazil. bioRxiv 2021:2021.04.28.441795

Hill A, Torres Jiménez MF, Chazot N, Cássia-Silva C, Faurby S, Bacon C. Fruit colour and range size interact to influence diversification. bioRxiv 2021:2021.10.26.465838

Meseguer AS, Michel A, Fabre P-H, Pérez-Escobar OA, Chomicki G, Riina R, Antonelli A, Antoine P-O, Delsuc F, Condamine FL. The Origins and Drivers of Neotropical Diversity. bioRxiv 2021:2021.02.24.432517

Richards C, Cooke RS, Bowler DE, Boerder K, Bates AE. Bycatch mitigation could prevent strong changes in the ecological strategies of seabird communities across the globe. bioRxiv 2021:2021.05.24.445481

Shaik Z, Bergh NG, Oxelman B, Verboom GA. Minimal clustering and species delimitation based on multi-locus alignments vs SNPs: the case of the Seriphium plumosum L. complex (Gnaphalieae: Asteraceae). bioRxiv 2021:2021.03.21.436318

Silvestro D, Bacon CD, Ding W, Zhang Q, Donoghue PCJ, Antonelli A, Xing Y. Unbiased clade age estimation using a Bayesian Brownian Bridge. bioRxiv 2021:2021.04.03.438104

Thom G, Moreira LR, Batista R, Gehara M, Aleixo A, Smith BT. Genomic architecture controls spatial structuring in Amazonian birds. bioRxiv2021:2021.12.01.470789

Torres Jiménez MF, Chazot N, Emilio T, Uddling Fredin J, Antonelli A, Faurby S, Bacon CD. Temperature predicts leaf shape in palms (Arecaceae). bioRxiv 2021:2021.10.26.465896

Zizka A, Andermann T, Silvestro D. IUCNN-deep learning approaches to approximate species' extinction risk. bioRxiv2021:2021.06.17.448832

Staude I, Pereira HM, Daskalova GN, Bernhardt-Römermann M, Diekmann M, Pauli H, Van Calster H, Vellend M, Bjorkman AD, …, Baeten L. Consistent replacement of small-by large-ranged plant species across habitats. EcoEvoRxiv Preprints 2021

Dudas G, Hong SL, …, Baele G. Preprint: Travel-driven emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nature Communications 2021;12(1):5769

2020

Andermann, T., Faurby, S., Turvey, S. T., Antonelli, A., & Silvestro, D. (2020). The past and future human impact on mammalian diversity. Science Advances, 6(36), eabb2313. doi:10.1126/sciadv.abb2313

Andermann, T., Torres, M., Matos-Maraví, P., Batista, R., Blanco-Pastor, J., Gustafsson, A. L. S., . . . Antonelli, A. (2020). A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project. Frontiers in Genetics, 10, 1407. doi:10.3389/fgene.2019.01407

Andersson AF, Bissett A, Finstad AG, Fossøy F, Grosjean M, Hope M, Kõljalg U, Lundin D, Nilsson RN,Prager M, Stjernegaard T, Svenningsen C & Schigel D (2020) Publishing sequence-derived datathrough biodiversity data platforms [Community review draft]. Copenhagen: GBIF Secretariat.https://doi.org/10.35035/doc-vf1a-nr22.

Antonelli, A., al, e., & Liu, U. (2020). Kew State of the Worlds Plants and Fungi.
DOI: https://doi.org/10.34885/172

Antonelli, A., Hiscock, S., Lennon, S., Simmonds, M., Smith, R., & Young, B. (2020). Protecting and sustainably using the world’s plants and fungi. Plants, People, Planet, 2, 368-370. doi:10.1002/ppp3.10150

Azevedo, J. A., Collevatti, R., Jaramillo, C., Stromberg, C., Guedes, T., Matos-Maraví, P., . . . Antonelli, A. (2020). On the Young Savannas in the Land of Ancient Forests. In (pp. 271-298).
DOI: 10.1007/978-3-030-31167-4_12

Azevedo, J. A., Guedes, T., Nogueira, C., Passos, P., Sawaya, R., Prudente, A., . . . Antonelli, A. (2020). Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes. Ecography, 2, 1-12. doi:10.1111/ecog.04815

Bakker, F., Antonelli, A., Clarke, J., Cook, J., Edwards, S., Ericson, P., . . . Källersjö, M. (2020). The Global Museum: natural history collections and the future of evolutionary science and public education. PeerJ, 8, e8225. doi:10.7717/peerj.8225

Barbosa, S., Lima, M., & Guedes, T. (2020). First record of Thamnodynastes almae Franco & Ferreira, 2002 (Serpentes, Dipsadidae, Xenodontinae) in the state of Piauí, northeastern Brazil, and updated distribution map. Check List, 16, 1323-1328. doi:10.15560/16.5.1323

Batista, R., Olsson, U., Andermann, T., Aleixo, A., Ribas, C., & Antonelli, A. (2020). Phylogenomics and biogeography of the world's thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history. Proceedings of the Royal Society B: Biological Sciences, 287, 20192400. doi:10.1098/rspb.2019.2400

Belote, T., Faurby, S., Brennan, A., Carter, N., Dietz, M., Hahn, B., . . . Gage, J. (2020). Mammal species composition reveals new insights into Earth’s remaining wilderness. Frontiers in Ecology and the Environment, 18. doi:10.1002/fee.2192

Bennett, D., Hettling, H., Silvestro, D., Vos, R., & Antonelli, A. (2020). outsider: Install and run programs, outside of R, inside of R. Journal of Open Source Software, 5, 2038. doi:10.21105/joss.02038

Bowler, D. E., Bjorkman, A. D., Dornelas, M., Myers-Smith, I. H., Navarro, L. M., Niamir, A., . . . Bates, A. E. (2020). Mapping human pressures on biodiversity across the planet uncovers anthropogenic threat complexes. People and Nature, 2(2), 380-394. doi:https://doi.org/10.1002/pan3.10071

Canales, N.A., Nikolaj T., Hansen, G., Cornett, C., Walker, K., Driver, F., Antonelli, A., Maldonado, C., Nesbitt, M., Barnes, C.J., Rønsted, N. (2020). Historical chemical annotations of Cinchonabark collections are comparable to results from current day high-pressure liquid chromatography technologies. Journal of Ethnopharmacology249: 112375. DOI: https://doi.org/10.1016/j.jep.2019.112375

Carrillo, J. D., Faurby, S., Silvestro, D., Zizka, A., Jaramillo, C., Bacon, C. D., & Antonelli, A. (2020). Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange. Proceedings of the National Academy of Sciences, 117(42), 26281-26287. doi:10.1073/pnas.2009397117

Cássia-Silva, C., Freitas, C. G., Lemes, L. P., Paterno, G. B., Dias, P. A., Bacon, C. D., & Collevatti, R. G. (2020). Higher evolutionary rates in life-history traits in insular than in mainland palms. Scientific Reports, 10(1), 21125. doi:10.1038/s41598-020-78267-5

Chen, S.-C., Poschlod, P., Antonelli, A., Liu, U., & Dickie, J. (2020). Trade‐off between seed dispersal in space and time. Ecology Letters. doi:10.1111/ele.13595

Condamine, F., Silvestro, D., Koppelhus, E., & Antonelli, A. (2020). The rise of angiosperms pushed conifers to decline during global cooling. Proceedings of the National Academy of Sciences, 117. doi:10.1073/pnas.2005571117

Cripps, C. L., Larsson, E., & Vauras, J. (2020). Nodulose-spored Inocybe from the Rocky Mountain alpine zone molecularly linked to European and type specimens. Mycologia, 112(1), 133-153. doi:10.1080/00275514.2019.1677419

Daru, B. H., Farooq, H., Antonelli, A., & Faurby, S. (2020). Endemism patterns are scale dependent. Nature Communications, 11(1), 2115. doi:10.1038/s41467-020-15921-6

Daskalova, G. N., Myers-Smith, I. H., Bjorkman, A. D., Blowes, S. A., Supp, S. R., Magurran, A. E., & Dornelas, M. (2020). Landscape-scale forest loss as a catalyst of population and biodiversity change. Science, 368(6497), 1341-1347. doi:10.1126/science.aba1289

Debat, V., Chazot, N., Jarosson, S., Blandin, P., & Llaurens, V. (2020). What drives the diversification of eyespots in Morpho butterflies? Disentangling developmental and selective constraints from neutral evolution. Frontiers in Ecology and Evolution, 8, 112.
DOI:https://doi.org/10.3389/fevo.2020.00112

Doughty, C. E., Prys-Jones, T. O., Faurby, S., Abraham, A. J., Hepp, C., Leshyk, V., . . . Galetti, M. (2020). Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases. Ecography, 43(8), 1107-1117. doi:https://doi.org/10.1111/ecog.05209

Ducatez, S., Lefebvre, L., Sayol, F., Audet, J.-N., & Sol, D. (2020). Host Cognition and Parasitism in Birds: A Review of the Main Mechanisms. Frontiers in Ecology and Evolution, 8(102). doi:10.3389/fevo.2020.00102

Durkin, L., Jansson, T., Sanchez, M., Khomich, M., Ryberg, M., Kristiansson, E., & Nilsson, R. H. (2020). When mycologists describe new species, not all relevant information is provided (clearly enough). MycoKeys, 72. doi:10.3897/mycokeys.72.56691

Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2020). raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 1-5. doi:10.1111/2041-210X.13512

Eggens, F., Jafari, F., Thollesson, M., Crameri, S., Zarre, S., & Oxelman, B. (2020). Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section. PhytoKeys, 159, 1-34. doi:10.3897/phytokeys.159.51500

Eggens, F., Jafari, F., Zarre, S., & Oxelman, B. (2020). (2755) Proposal to conserve the name Silene linearis Decne. against S. linearis Sweet (Caryophyllaceae). Taxon, 69(4), 825-826.
DOI: 10.1002/tax.12302

Eilertsen, M. H., Dahlgren, T. G., & Rapp, H. T. (2020). A New Species of Osedax (Siboglinidae: Annelida) From Colonization Experiments in the Arctic Deep Sea. Frontiers in Marine Science, 7(443). doi:10.3389/fmars.2020.00443

Entiauspe-Neto, O., Guedes, T., Loebmann, D., & de Lema, T. (2020). Taxonomic Status of Two Simultaneously Described Apostolepis Cope, 1862 Species (Dipsadidae: Elapomorphini) from Caatinga Enclaves Moist Forests, Brazil. Journal of Herpetology, 54, 225. doi:10.1670/19-053

Entiauspe-Neto, O., Koch, C., Guedes, T., & Tiutenko, A. (2020). Revisiting the taxonomic status of Apostolepis sanctaeritae, a forgotten Neotropical dipsadid snake. SALAMANDRA, 56, 14.
ISSN 0036–337

Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae).
DOI: 10.21203/rs.3.rs-48002/v4

Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Two ancient genome duplication events shape diversity in Hibiscus L. (Malvaceae).
DOI: 10.21203/rs.3.rs-48002/v2

Ernfors, M., Björk, R. G., Nousratpour, A., Rayner, D., Weslien, P., & Klemedtsson, L. (2020). Greenhouse gas dynamics of a well-drained afforested agricultural peatland. Boreal Environment Research, 25, 65-77.
ISSN 1797-2469

Farooq, H., Azevedo, J., Belluardo, F., Nanvonamuquitxo, C., Bennett, D., Moat, J., . . . Antonelli, A. (2020). WEGE: A new metric for ranking locations for biodiversity conservation. Diversity and Distributions, 26(11), 1456-1466. doi:https://doi.org/10.1111/ddi.13148

Farooq, H., Azevedo, J. A. R., Soares, A., Antonelli, A., & Faurby, S. (2020). Mapping Africa’s Biodiversity: More of the Same Is Just Not Good Enough. Systematic Biology. doi:10.1093/sysbio/syaa090

Farooq, H., & Uetz, P. (2020). Identifying Australian snakes by color patterns. VERTEBRATE ZOOLOGY, 70(3), 473-482.
DOI: 10.26049/VZ70-3-2020-15

Faurby, S., Silvestro, D., Werdelin, L., & Antonelli, A. (2020). Brain expansion in early hominins predicts carnivore extinctions in East Africa. Ecology Letters, 23(3), 537-544. doi:https://doi.org/10.1111/ele.13451

García Criado, M., Myers-Smith, I. H., Bjorkman, A. D., Lehmann, C. E. R., & Stevens, N. (2020). Woody plant encroachment intensifies under climate change across tundra and savanna biomes. Global Ecology and Biogeography, 29(5), 925-943. doi:https://doi.org/10.1111/geb.13072

Gomes, D. F., Azevedo, J., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15(12), e0243210. doi:10.1371/journal.pone.0243210

Grace, O., Lovett, J., Gore, C., Moat, J., Ondo, I., Pironon, S., . . . Wilkin, P. (2020). R E V I E W Plant Power: Opportunities and challenges for meeting sustainable energy needs from the plant and fungal kingdoms Societal Impact Statement. Plants People Planet, 2, 446-462. doi:10.1002/ppp3.10147

Guedes, T., Azevedo, J. A., Bacon, C., Provete, D., & Antonelli, A. (2020). Diversity, Endemism, and Evolutionary History of Montane Biotas Outside the Andean Region. In (pp. 299-328).
DOI: 10.1007/978-3-030-31167-4_13

Guedes, T., & Guedes, A. (2020). Notes on court and copula, fertility, nest, eggs and hatchlings of the Caatinga’s black snake Boiruna sertaneja Zaher, 1996 (Serpentes: Dipsadidae) from northeastern Brazil. Anais da Academia Brasileira de Ciências, 92, e20190588. doi:10.1590/0001-3765202020190588

Guedes, T., Queiroz, A., Souza, P., & Hamdan, B. (2020). Updated distribution maps with new records of Trilepida fuliginosa (Passos, Caramaschi & Pinto, 2006) and Drepanoides anomalus (Jan, 1863) (Squamata, Serpentes) in the state of Maranhão, northeastern Brazil. Check List, 16, 423-433. doi:10.15560/16.2.423

Hamdan, B., Guedes, T., Carrasco, P., & Melville, J. (2020). A complex biogeographic history of diversification in Neotropical lancehead pitvipers (Serpentes, Viperidae). Zoologica Scripta, 49, 145-158. doi:10.1111/zsc.12398

Hannus, S., Hirons, Baxter, McAllister, H., Wiström, B., & Sjöman, H. (2020). Intraspecific drought tolerance of Betula pendula genotypes: an evaluation using leaf turgor loss in a botanical collection. Trees, 13. doi:10.1007/s00468-020-02059-7

Helmstetter, A. J., Kamga, S. M., Bethune, K., Lautenschläger, T., Zizka, A., Bacon, C. D., . . . Couvreur, T. L. P. (2020). Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae). Plants, 9(4), 549.
DOI: https://doi.org/10.3390/plants9040549

Hestetun, J. T., Bye-Ingebrigtsen, E., Nilsson, R. H., Glover, A. G., Johansen, P.-O., & Dahlgren, T. G. (2020). Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna metabarcoding. Marine Biodiversity, 50(5), 70. doi:10.1007/s12526-020-01093-5

Hirons, A., Watkins, H., Baxter, T., Miesbauer, J., Male-Muñoz, A., Martin, K., . . . Sjöman, H. (2020). Using botanic gardens and arboreta to help identify urban trees for the future. Plants People Planet, 1-12. doi:10.1002/ppp3.10162

Id, D., Azevedo, J. A., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15, 1-45. doi:10.1371/journal.pone.0243210

Kõljalg, U., Nilsson, R. H., Schigel, D., Tedersoo, L., Larsson, K.-H., May, T., . . . Abarenkov, K. (2020). The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa. Microorganisms, 8. doi:10.3390/microorganisms8121910

Korshunova, T., Bakken, T., Grøtan, V. V., Johnson, K. B., Lundin, K., & Martynov, A. (2020). A synoptic review of the family Dendronotidae (Mollusca: Nudibranchia): a multilevel organismal diversity approach. Contributions to Zoology, 90(1), 93-153. doi:https://doi.org/10.1163/18759866-BJA10014

Korshunova, T., Fletcher, K., Picton, B., Lundin, K., Kashio, S., Sanamyan, N., . . . Martynov, A. (2020). The Emperor’s Cadlina, hidden diversity and gill cavity evolution: new insights for the taxonomy and phylogeny of dorid nudibranchs (Mollusca: Gastropoda). Zoological Journal of the Linnean Society, 189(3), 762-827. doi:10.1093/zoolinnean/zlz126

Korshunova, T., Malmberg, K., Prkić, J., Petani, A., Fletcher, K., Lundin, K., & Martynov, A. (2020). Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity. ZooKeys, 917. doi:10.3897/zookeys.917.47444

Korshunova, T. A., Sanamyan, N. P., Sanamyan, K. E., Bakken, T., Lundin, K., Fletcher, K., & Martynov, A. V. (2020). Biodiversity hotspot in cold waters: a review of the genus Cuthonella with descriptions of seven new species (Mollusca, Nudibranchia). Contributions to Zoology, 90(2), 216-283. doi:https://doi.org/10.1163/18759866-BJA10017

Larsson, E., & Bendiksen, K. (2020). Hygrophorus betulae, a new species described from subalpine birch forest in Finland. Karstenia, 58(1), 1-9.
DOI: 10.29203/ka.2020.484

Larsson, K.-H., Larsson, E., Ryvarden, L., & Spirin, V. (2020). Some new combinations of corticioid fungi (Basidiomycota. Agaricomycetes). 40, 113-117.
ISSN 0802-8966

Lembrechts, J. J., Aalto, J., Ashcroft, M. B., De Frenne, P., Kopecký, M., Lenoir, J., . . . Nijs, I. (2020). SoilTemp: A global database of near-surface temperature. Global Change Biology, 26(11), 6616-6629. doi:https://doi.org/10.1111/gcb.15123

Lim, J. Y., Svenning, J.-C., Göldel, B., Faurby, S., & Kissling, W. D. (2020). Frugivore-fruit size relationships between palms and mammals reveal past and future defaunation impacts. Nature Communications, 11(1), 4904. doi:10.1038/s41467-020-18530-5

Ljungstrand, E. & Persson, C. (2020). Dipsacaeae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

López, G. M., Gelfo, J. N., Bauzá, N., Bond, M., & Tejedor, M. F. (2020). Biochron and Diversity of Archaeopithecidae (Mammalia, Notoungulata) and a New Genus and Species from the Eocene of Patagonia, Argentina. Ameghiniana, 57(2), 103-116, 114. Retrieved from https://doi.org/10.5710/AMGH.18.01.2020.3291

Martynov, A., Lundin, K., Picton, B., Fletcher, K., Malmberg, K., & Korshunova, T. (2020). Multiple paedomorphic lineages of soft-substrate burrowing invertebrates: parallels in the origin of Xenocratena and Xenoturbella. PLOS ONE, 15(1), e0227173. doi:10.1371/journal.pone.0227173

Mashburn, B., Perez, A. J., Persson, C., Zapata, N., Cevallos, D., & Muchhala, N. (2020). Burmeistera quimiensis (Lobelioideae, Campanulaceae): A new species from the Cordillera del Cóndor range in southeast Ecuador. Phytotaxa, 433(1), 67-74.
https://doi.org/10.11646/phytotaxa.433.1.7

Melo, W., Vieira, L., Novaes, E., Bacon, C., & Collevatti, R. (2020). Selective Sweeps Lead to Evolutionary Success in an Amazonian Hyperdominant Palm. Frontiers in Genetics, 11. doi:10.3389/fgene.2020.596662

Mohammadi, Z., Aliabadian, M., Ghorbani, F., Moghaddam, F. Y., Lissovsky, A. A., Obst, M., & Olsson, U. (2020). Unidirectional Introgression and Evidence of Hybrid Superiority over Parental Populations in Eastern Iranian Plateau Population of Hares (Mammalia: Lepus Linnaeus, 1758). Journal of Mammalian Evolution, 27(4), 723-743. doi:10.1007/s10914-019-09478-5

Moleón, M., Sánchez-Zapata, J., Donázar, J., Revilla, E., Martín-López, B., Gutiérrez-Cánovas, T., . . . Svenning, J.-C. (2020). Rethinking megafauna. Proceedings of the Royal Society B: Biological Sciences, 287, 20192643. doi:10.1098/rspb.2019.2643

Molia, A., Larsson, E., Jeppson, M., Læssøe, T., & Larsson, K. H. (2020). Elaphomyces section Elaphomyces (Eurotiales, Ascomycota) - taxonomy and phylogeny of North European taxa, with the introduction of three new species. Fungal systematics and evolution, 5, 283-300. doi:10.3114/fuse.2020.05.14

Neves, B., Kessous, I. M., Moura, R. L., Couto, D. R., Zanella, C. M., Antonelli, A., . . . Costa, A. F. (2020). Pollinators drive floral evolution in an Atlantic Forest genus. AoB PLANTS, 12(5). doi:10.1093/aobpla/plaa046

Neves, B., Zanella, C., Kessous, I., Uribbe, F., Salgueiro, F., Bered, F., . . . Costa, A. (2019). Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest. Journal of Biogeography, 47. doi:10.1111/jbi.13746

Nic Lughadha, E., Bachman, S., Leão, T., Forest, F., Halley, J., Moat, J., . . . Walker, B. (2020). Extinction risk and threats to plants and fungi. Plants People Planet, 2, 389-408. doi:10.1002/ppp3.10146

Olofsson, M., Hagan, J. G., Karlson, B., & Gamfeldt, L. (2020). Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient. Scientific Reports, 10(1), 17666. doi:10.1038/s41598-020-74428-8

Paton, A., Antonelli, A., Carine, M., Forzza, R., Davies, N., Demissew, S., . . . Dickie, J. (2020). REVIEW Plant and fungal collections: Current status, future perspectives. Plants People Planet. doi:10.1002/ppp3.10141

Pearce, T., Antonelli, A., Brearley, F., Couch, C., Forzza, R., Gonçalves, S., . . . Breman, E. (2020). International collaboration between collections‐based institutes for halting biodiversity loss and unlocking the useful properties of plants and fungi. Plants, People, Planet, 2, 515-534. doi:10.1002/ppp3.10149

Pedersen, R. Ø., Faurby, S., & Svenning, J.-C. (2020). Extinctions have strongly reduced the mammalian consumption of primary productivity.
DOI: 10.1101/2020.10.15.341297

Peixoto, M., Guedes, T., Silva, E., Feio, R., & Romano, P. (2020). Biogeographic tools help to assess the effectiveness of protected areas for the conservation of anurans in the Mantiqueira mountain range, Southeastern Brazil. Journal for Nature Conservation, 54, 125799. doi:10.1016/j.jnc.2020.125799

Pérez-Escobar, O., Bellot, S., Gros-Balthazard, M., Flowers, J., Nesbitt, M., Ryan, P., . . . Baker, W. (2020). Archaeogenomics of a ~2,100-year-old Egyptian leaf provides a new timestamp on date palm domestication.
DOI: 10.1101/2020.11.26.400408

Pérez-Escobar, O., Richardson, J.-E., Howes, M.-J., Lucas, E., Róman, N., Collemare, J., . . . Antonelli, A. (2020). Untapped resources for medical research. Science, 369, 781-782. doi:10.1126/science.abc8085

Perrigo, A. L., Vadell, E. M., Cavender, J. C., Landolt, J. C., Liu, P., & Stephenson, S. L. (2020). Additional new species suggest high dictyostelid diversity on Madagascar. Mycologia, 112(5), 1026-1042. doi:10.1080/00275514.2020.1802641

Persson, C. (2020). Caprifoliaceae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

Pimiento, C., Bacon, C. D., Silvestro, D., Hendy, A., Jaramillo, C., Zizka, A., . . . Antonelli, A. (2020). Selective extinction against redundant species buffers functional diversity. Proceedings of the Royal Society B: Biological Sciences, 287(1931), 20201162. doi:doi:10.1098/rspb.2020.1162

Pimiento, C., Leprieur, F., Silvestro, D., Lefcheck, J. S., Albouy, C., Rasher, D. B., . . . Griffin, J. N. (2020). Functional diversity of marine megafauna in the Anthropocene. Science Advances, 6(16), eaay7650. doi:10.1126/sciadv.aay7650

Pironon, S., Borrell, J., Ondo, I., Douglas, R., Phillips, C., Khoury, C. K., . . . Antonelli, A. (2020). Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity. Plants, 9, 1128. doi:10.3390/plants9091128

Ritter, C., Ribas, C., Menger, J., Borges, S., Bacon, C., Metzger, J., . . . Cornelius, C. (2020). Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird.
doi: https://doi.org/10.1101/2020.12.25.424395 

Ritter, C. D., Dunthorn, M., Anslan, S., de Lima, V. X., Tedersoo, L., Nilsson, R. H., & Antonelli, A. (2020). Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecology and Evolution, 10(14), 7509-7524. doi:https://doi.org/10.1002/ece3.6477

Robert, S. C. C., Felix, E., & Amanda, E. B. (2020). Ecological distinctiveness of birds and mammals at the global scale. Global Ecology and Conservation, 22, e00970. doi:https://doi.org/10.1016/j.gecco.2020.e00970

Rojas-Morales, J. A., Ramírez-Chaves, H. E., & Guedes, T. B. (2020). New record for Colombia, updated distribution map, and comments on the defensive behavior of Thamnodyastes dixoni Bailey & Thomas, 2007 (Serpentes, Dipsadidae, Xenodontinae). Check List, 16, 169.
DOI: 10.15560/16.1.169

Roncal, J., Nieto-Blázquez, M. E., Cardona, A., & Bacon, C. (2020). Historical Biogeography of Caribbean Plants Revises Regional Paleogeography. In (pp. 521-546).
DOI: 10.1007/978-3-030-31167-4_20

Sandom, C., Middleton, O., Lundgren, E., Rowan, J., Schowanek, S., Svenning, J.-C., & Faurby, S. (2020). Trophic rewilding presents regionally specific opportunities for mitigating climate change. Philosophical Transactions of The Royal Society B Biological Sciences, 375. doi:10.1098/rstb.2019.0125

Sayol, F., Collado, M. Á., Garcia-Porta, J., Seid, M. A., Gibbs, J., Agorreta, A., . . . Bartomeus, I. (2020). Feeding specialization and longer generation time are associated with relatively larger brains in bees. Proceedings of the Royal Society B: Biological Sciences, 287(1935), 20200762. doi:doi:10.1098/rspb.2020.0762

Sayol, F., Sol, D., & Pigot, A. L. (2020). Brain Size and Life History Interact to Predict Urban Tolerance in Birds. Frontiers in Ecology and Evolution, 8(58). doi:10.3389/fevo.2020.00058

Sayol, F., Steinbauer, M., Blackburn, T., Antonelli, A., & Faurby, S. (2020). Anthropogenic extinctions conceal widespread evolution of flightlessness in birds. Science Advances, 6, eabb6095. doi:10.1126/sciadv.abb6095

Seiffert, E. R., Tejedor, M. F., Fleagle, J. G., Novo, N. M., Cornejo, F. M., Bond, M., . . . Campbell, K. E. (2020). A parapithecid stem anthropoid of African origin in the Paleogene of South America. Science, 368(6487), 194-197. doi:10.1126/science.aba1135

Silva, C., Freitas, C., Lemes, L., Paterno, G., Dias, P., Bacon, C., & Collevatti, R. (2020). Higher evolutionary rates in life-history traits in insular than in mainland palms. Scientific Reports, 10. doi:10.1038/s41598-020-78267-5

Silva, W., Nyqvist, A., Jonsson, P., & Harding, K. (2020). Ecological success of sexual and asexual reproductive strategies invading an environmentally unstable habitat.

Smiljanić, J., Edler, D., & Rosvall, M. (2020). Mapping flows on sparse networks with missing links. Physical Review E, 102(1), 012302. doi:10.1103/PhysRevE.102.012302

Sulistyo, B. P., Larsson, K.-H., Haelewaters, D., & Ryberg, M. (2020). Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov. Fungal Biology. doi:10.1016/j.funbio.2020.11.007

Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., . . . de Vries, F. T. (2020). Global plant trait relationships extend to the climatic extremes of the tundra biome. Nature Communications, 11(1), 1351. doi:10.1038/s41467-020-15014-4

Ulian, T., Diazgranados, M., Pironon, S., Padulosi, S., Liu, U., Davies, L., . . . Mattana, E. (2020). Unlocking plant resources to support food security and promote sustainable agriculture. Plants People Planet, 2020, 421-445. doi:10.1002/ppp3.10145

Urban, O., & Per, A. (2020). A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae). Molecular Phylogenetics and Evolution, 146, 106757. doi:https://doi.org/10.1016/j.ympev.2020.106757

Uribbe, F., Neves, B., Jacques, S., & Costa, A. (2020). Morphological Variation in the Vriesea procera Complex (Bromeliaceae, Tillandsioideae) in the Brazilian Atlantic Rainforest, with Recognition of New Taxa. Systematic Botany, 45. doi:10.1600/036364420X15801369352306

Vauras, J., & Larsson, E. (2020). First records of Inocybe melleiconica and I. pararubens for Northern Europe with a new variety from the alpine zone of the Scandinavian mountains. Karstenia, 58. doi:10.29203/ka.2020.487

Vilella, M., Ferrandiz-Rovira, M., & Sayol, F. (2020). Coexistence of predators in time: Effects of season and prey availability on species activity within a Mediterranean carnivore guild. Ecology and Evolution, 10(20), 11408-11422. doi:https://doi.org/10.1002/ece3.6778

Voitk, A., Saar, I., Lodge, D. J., Boertmann, D., Berch, S. M., & Larsson, E. (2020). New species and reports of Cuphophyllus from northern North America compared with related Eurasian species. Mycologia, 112(2), 438-452. doi:10.1080/00275514.2019.1703476

von Proschwitz, T. (2020). Rapid invasion of the slug <i>Krynickillus melanocephalus</i> Kaleniczenko, 1851 in Sweden and some notes on the biology and anthropochorous spread of the species in Europe (Gastropoda: Eupulmonata: Agriolimacidae). Folia Malacologica, 28(3), 227-234. doi:10.12657/folmal.028.018

von Proschwitz, T., & Wengström, N. (2020). Zoogeography, ecology, and conservation status of the large freshwater mussels in Sweden. Hydrobiologia. doi:10.1007/s10750-020-04351-6

Wiemers, M., Chazot, N., Wheat, C. W., Schweiger, O., & Wahlberg, N. (2020). A complete time-calibrated multi-gene phylogeny of the European butterflies. ZooKeys, 938. doi:10.3897/zookeys.938.50878

Williams, C., Walsh, A., Vaglica, V., Sirakaya, A., Silva, M., Dalle, G., . . . Cowell, C. (2020). Conservation Policy: Helping or hindering science to unlock properties of plants and fungi. Plants People Planet, 2, 535-545. doi:10.1002/ppp3.10139

Wurzbacher, C., Kreiling, A.-K., Svantesson, S., Van den Wyngaert, S., Larsson, E., Heeger, F., . . . Pálsson, S. (2020). Fungal communities in groundwater springs along the volcanic zone of Iceland. Inland Waters, 10(3), 418-427. doi:10.1080/20442041.2019.1689065

Zanne, A. E., Abarenkov, K., Afkhami, M. E., Aguilar-Trigueros, C. A., Bates, S., Bhatnagar, J. M., . . . Treseder, K. K. (2020). Fungal functional ecology: bringing a trait-based approach to plant-associated fungi. Biological Reviews, 95(2), 409-433. doi:https://doi.org/10.1111/brv.12570

Zizka, A., Antunes Carvalho, F., Calvente, A., Rocio Baez-Lizarazo, M., Cabral, A., Coelho, J. F. R., . . . Antonelli, A. (2020). No one-size-fits-all solution to clean GBIF. PeerJ, 8, e9916. doi:10.7717/peerj.9916

Zizka, A., Rydén, O., Edler, D., Klein, J., Aronsson, H., Perrigo, A., . . . Antonelli, A. (2020). Exploring the Impact of Political Regimes on Biodiversity. SSRN Electronic Journal. doi:10.2139/ssrn.3561430

Zrimec, J., Börlin, C. S., Buric, F., Muhammad, A. S., Chen, R., Siewers, V., . . . Zelezniak, A. (2020). Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. Nature Communications, 11(1), 6141. doi:10.1038/s41467-020-19921-4

2019

Amorim, B. S., Vasconcelos, T. N. C., Souza, G., Alves, M., Antonelli, A., & Lucas, E. (2019). Advanced understanding of phylogenetic relationships, morphological evolution and biogeographic history of the mega-diverse plant genus Myrcia and its relatives (Myrtaceae: Myrteae). Molecular Phylogenetics and Evolution, 138, 65-88. doi:https://doi.org/10.1016/j.ympev.2019.05.014

Andermann, T., Faurby, S., Cooke, R., Silvestro, D., & Antonelli, A. (2019). iucn_sim - Improved predictions of future extinctions using IUCN status assessments. bioRxiv, 2019.2012.2016.878249. doi:10.1101/2019.12.16.878249

Andermann, T., Torres Jimenez, M. F., Matos-Maraví, P., Batista, R., Blanco-Pastor, J. L., Gustafsson, A. L. S., . . . Antonelli, A. (2019). A guide to carrying out a phylogenomic target sequence capture project. PeerJ Preprints, 7, e27968v27961. doi:10.7287/peerj.preprints.27968v1

Antonelli, A. (2019). Tree plantations: we must get them right. Nature, 572(7768), 178.

Antonelli, A., Smith, R. J., & Simmonds, M. S. J. (2019). Unlocking the properties of plants and fungi for sustainable development. Nature Plants, 5(11), 1100-1102. doi:10.1038/s41477-019-0554-1

Bakker, F. T., Antonelli, A., Clarke, J., Cook, J. A., Edwards, S., Ericson, P. G., . . . Gillespie, R. (2019). The Global Museum: natural history collections and the future of evolutionary biology and public education. PeerJ Preprints, 7.

Barrett, C. F., McKain, M. R., Sinn, B. T., Ge, X.-J., Zhang, Y., Antonelli, A., & Bacon, C. D. (2019). Ancient Polyploidy and Genome Evolution in Palms. Genome Biology and Evolution, 11(5), 1501-1511. doi:10.1093/gbe/evz092

Barrett, C. F., Sinn, B. T., King, L. T., Medina, J. C., Bacon, C. D., Lahmeyer, S. C., & Hodel, D. R. (2019). Phylogenomics, biogeography and evolution in the American genus Brahea (Arecaceae). Botanical Journal of the Linnean Society, 190(3), 242-259. doi:10.1093/botlinnean/boz015

Bennett, D. J., Sutton, M. D., & Turvey, S. T. (2019). How the past impacts the future: modelling the performance of evolutionarily distinct mammals through time. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1788), 20190210. doi:doi:10.1098/rstb.2019.0210

Bernal, R., Bacon, C. D., Balslev, H., Hoorn, C., Bourlat, S. J., Tuomisto, H., . . . Antonelli, A. (2019). Could coastal plants in western Amazonia be relicts of past marine incursions? Journal of Biogeography, 46(8), 1749-1759. doi:10.1111/jbi.13560

Bernardo-Madrid, R., Calatayud, J., González-Suárez, M., Rosvall, M., Lucas, P. M., Rueda, M., . . . Revilla, E. (2019). Human activity is altering the world’s zoogeographical regions. Ecology Letters, 22(8), 1297-1305. doi:10.1111/ele.13321

Bogarín, D., Pérez-Escobar, O. A., Karremans, A. P., Fernández, M., Kruizinga, J., Pupulin, F., . . . Gravendeel, B. (2019). Phylogenetic comparative methods improve the selection of characters for generic delimitations in a hyperdiverse Neotropical orchid clade. Scientific Reports, 9(1), 15098. doi:10.1038/s41598-019-51360-0

Bravo, G. A., Antonelli, A., Bacon, C. D., Bartoszek, K., Blom, M. P. K., Huynh, S., . . . Edwards, S. V. (2019). Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. PeerJ, 7, e6399. doi:10.7717/peerj.6399

Buckland-Nicks, J., Lundin, K., & Wallberg, A. (2019). The sperm of Xenacoelomorpha revisited: implications for the evolution of early bilaterians. Zoomorphology, 138(1), 13-27. doi:10.1007/s00435-018-0425-8

Cássia-Silva, C., Freitas, C. G., Alves, D. M. C. C., Bacon, C. D., & Collevatti, R. G. (2019). Niche conservatism drives a global discrepancy in palm species richness between seasonally dry and moist habitats. Global Ecology and Biogeography, 28(6), 814-825. doi:10.1111/geb.12895

Chazot, N., Wahlberg, N., Freitas, A. V. L., Mitter, C., Labandeira, C., Sohn, J.-C., . . . Heikkilä, M. (2019). Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited. Systematic Biology, 68(5), 797-813. doi:10.1093/sysbio/syz002

Chazot, N., Willmott, K. R., Lamas, G., Freitas, A. V. L., Piron-Prunier, F., Arias, C. F., . . . Elias, M. (2019). Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation. Global Ecology and Biogeography, 28(8), 1118-1132. doi:10.1111/geb.12919

Chomicki, G., Weber, M., Antonelli, A., Bascompte, J., & Kiers, E. T. (2019). The Impact of Mutualisms on Species Richness. Trends in Ecology & Evolution, 34(8), 698-711. doi:https://doi.org/10.1016/j.tree.2019.03.003

Copas, K., Schigel, D., Jeppesen, T. S., Kõljalg, U., & Nilsson, R. H. (2019). Linnaeus meets eDNA: crosslinking open data between metagenomics infrastructures and GBIF. org to address spatial and taxonomic bias and advance understanding of biodiversity. Paper presented at the Geophysical Research Abstracts.

Duchen, P., Alfaro, M. L., Rolland, J., Salamin, N., & Silvestro, D. (2019). On the effect of asymmetrical trait inheritance on models of trait evolution. bioRxiv, 768820. doi:10.1101/768820

Dudas, G., & Bedford, T. (2019). The ability of single genes vs full genomes to resolve time and space in outbreak analysis. BMC Evolutionary Biology, 19(1), 232. doi:10.1186/s12862-019-1567-0

Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2019). raxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML. bioRxiv, 800912. doi:10.1101/800912

Eriksson, J. S. (2019). Polyploid Phylogenetics in Plants: Insights on non-model organisms in Fabaceae and Malvaceae.

Faurby, S., Werdelin, L., & Antonelli, A. (2019). Dispersal ability predicts evolutionary success among mammalian carnivores. bioRxiv, 755207. doi:10.1101/755207

Fernández-Martínez, M., Berloso, F., Corbera, J., Garcia-Porta, J., Sayol, F., Preece, C., & Sabater, F. (2019). Towards a moss sclerophylly continuum: Evolutionary history, water chemistry and climate control traits of hygrophytic mosses. Functional Ecology, 33(12), 2273-2289. doi:10.1111/1365-2435.13443

Fernández-Martínez, M., Pearse, I., Sardans, J., Sayol, F., Koenig, W. D., LaMontagne, J. M., . . . Janssens, I. A. (2019). Nutrient scarcity as a selective pressure for mast seeding. Nature Plants, 5(12), 1222-1228. doi:10.1038/s41477-019-0549-y

Ferrante, M. I., Entrambasaguas, L., Johansson, M., Töpel, M., Kremp, A., Montresor, M., & Godhe, A. (2019). Exploring Molecular Signs of Sex in the Marine Diatom Skeletonema marinoi. Genes, 10(7), 494.

Freitas, C. G., Bacon, C. D., Souza-Neto, A. C., & Collevatti, R. G. (2019). Adjacency and Area Explain Species Bioregional Shifts in Neotropical Palms. Frontiers in Plant Science, 10(55). doi:10.3389/fpls.2019.00055

Govindarajan, A. F., Källström, B., Selander, E., Östman, C., & Dahlgren, T. G. (2019). The highly toxic and cryptogenic clinging jellyfish Gonionemus sp. (Hydrozoa, Limnomedusae) on the Swedish west coast. PeerJ, 7, e6883. doi:10.7717/peerj.6883

Harfoot, M. B. J., Abraham, A., Tittensor, D. P., Costa, G. C., Faurby, S., Feldman, A., . . . Purves, D. (2019). Mechanistic macroecology: exploring the drivers of latitudinal variation in terrestrial body size in a General Ecosystem Model. bioRxiv, 775957. doi:10.1101/775957

Harmon, L. J., Andreazzi, C. S., Débarre, F., Drury, J., Goldberg, E. E., Martins, A. B., . . . Matthews, B. (2019). Detecting the macroevolutionary signal of species interactions. Journal of Evolutionary Biology, 32(8), 769-782. doi:10.1111/jeb.13477

Heiden, G., Antonelli, A., & Pirani, J. R. (2019). A novel phylogenetic infrageneric classification of Baccharis (Asteraceae: Astereae), a highly diversified American genus. TAXON, 68(5), 1048-1081. doi:10.1002/tax.12128

Ihlow, F., Farooq, H., Qvozdik, V., Hofmeyr, M., Conradie, W., Harvey, J., . . . Fritz, U. (2019). Geographic range extension of Speke's Hinge-back Tortoise Kinixys spekii Gray, 1863. Retrieved from http://hdl.handle.net/10141/622596

Jansen, H. M., Hansen, P. K., Brennan, N., Dahlgren, T. G., Fang, J., Nederlof, M. A. J., . . . Strand, Ø. (2019). Enhancing opportunistic polychaete communities under fish farms: an alternative concept for integrated aquaculture. Aquaculture Environment Interactions, 11, 331-336. Retrieved from https://www.int-res.com/abstracts/aei/v11/p331-336/

Johansson, O. N., Pinder, M. I. M., Ohlsson, F., Egardt, J., Töpel, M., & Clarke, A. K. (2019). Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi. Frontiers in Microbiology, 10(1828). doi:10.3389/fmicb.2019.01828

Johansson, O. N., Töpel, M., Egardt, J., Pinder, M. I. M., Andersson, M. X., Godhe, A., & Clarke, A. K. (2019). Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation. Scientific Reports, 9(1), 15143. doi:10.1038/s41598-019-51683-y

Johansson, O. N., Töpel, M., Pinder, M. I. M., Kourtchenko, O., Blomberg, A., Godhe, A., & Clarke, A. K. (2019). Skeletonema marinoi as a new genetic model for marine chain-forming diatoms. Scientific Reports, 9(1), 5391. doi:10.1038/s41598-019-41085-5

Kehoe, L., Reis, T., Virah-Sawmy, M., Balmford, A., Kuemmerle, T., Knohl, A., . . . Massa, B. (2019). Make EU trade with Brazil sustainable. Science, 364(6438), 341.

Klingberg, J., Karlsson, P. E., Andersson, C., Engardt, M., Karlsson, G. P., & Pleijel, H. (2019). Observed annual surface ozone maxima and minima in northern and central Europe from 1990–2015—latitude dependence and temporal trends. BOREAL ENVIRONMENT RESEARCH, 24, 201-214.

Kõljalg, U., Abarenkov, K., Nilsson, R. H., Larsson, K.-H., & Taylor, A. F. (2019). The UNITE Database for Molecular Identification and for Communicating Fungal Species. Biodiversity Information Science and Standards.

Korshunova, T., Mehrotra, R., Arnold, S., Lundin, K., Picton, B., & Martynov, A. (2019). The formerly enigmatic Unidentiidae in the limelight again: a new species of the genus Unidentia from Thailand (Gastropoda: Nudibranchia). ZooTaxa, 4551(5), 556-570.

Korshunova, T., Picton, B., Furfaro, G., Mariottini, P., Pontes, M., Prkić, J., . . . Martynov, A. (2019). Multilevel fine-scale diversity challenges the ‘cryptic species’ concept. Scientific Reports, 9(1), 6732. doi:10.1038/s41598-019-42297-5

Kramshøj, M., Albers, C. N., Svendsen, S. H., Björkman, M. P., Lindwall, F., Björk, R. G., & Rinnan, R. (2019). Volatile emissions from thawing permafrost soils are influenced by meltwater drainage conditions. Global Change Biology, 25(5), 1704-1716. doi:10.1111/gcb.14582

Larsson, K.-H., Svantesson, S., Miscevic, D., Kõljalg, U., & Larsson, E. (2019). Reassessment of the generic limits for Hydnellum and Sarcodon (Thelephorales, Basidiomycota). MycoKeys, 54. doi:10.3897/mycokeys.54.35386

Lentendu, G., Buosi, P. R. B., Cabral, A. F., Trevizan Segóvia, B., Ramos Meira, B., Lansac-Tôha, F. M., . . . Dunthorn, M. (2019). Protist Biodiversity and Biogeography in Lakes From Four Brazilian River–Floodplain Systems. Journal of Eukaryotic Microbiology, 66(4), 592-599. doi:10.1111/jeu.12703

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Loiseau, O., Weigand, A., Noben, S., Rolland, J., Silvestro, D., Kessler, M., . . . Salamin, N. (2019). Slowly but surely: gradual diversification and phenotypic evolution in the hyper-diverse tree fern family Cyatheaceae. Annals of Botany, 125(1), 93-103. doi:10.1093/aob/mcz145

Martynov, A., Mehrotra, R., Chavanich, S., Nakano, R., Kashio, S., Lundin, K., . . . Korshunova, T. (2019). The extraordinary genus Myja is not a tergipedid, but related to the Facelinidae s. str. with the addition of two new species from Japan (Mollusca, Nudibranchia). ZooKeys(818), 89-116. doi:10.3897/zookeys.818.30477

Matos-Maraví, P., Duarte Ritter, C., Barnes, C. J., Nielsen, M., Olsson, U., Wahlberg, N., . . . Antonelli, A. (2019). Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies. PeerJ, 7, e6727. doi:10.7717/peerj.6727

Matos-Maraví, P., Wahlberg, N., Antonelli, A., & Penz, C. M. (2019). Species limits in butterflies (Lepidoptera: Nymphalidae): reconciling classical taxonomy with the multispecies coalescent. Systematic Entomology, 44(4), 745-756. doi:10.1111/syen.12352

Matos-Maraví, P., Wahlberg, N., Freitas, A. V. L., DeVries, P. J., Antonelli, A., & Penz, C. M. (2019). Mesoamerica is a cradle and the Brazilian Atlantic Forest is a museum of Neotropical butterfly diversity (Lepidoptera: Nymphalidae: Brassolini). bioRxiv, 762393. doi:10.1101/762393

Meyer, X., Dib, L., Silvestro, D., & Salamin, N. (2019). Simultaneous Bayesian inference of phylogeny and molecular coevolution. Proceedings of the National Academy of Sciences, 116(11), 5027-5036. doi:10.1073/pnas.1813836116

Mohammadi, Z., Aliabadian, M., Ghorbani, F., Moghaddam, F. Y., Lissovsky, A. A., Obst, M., & Olsson, U. (2019). Unidirectional Introgression and Evidence of Hybrid Superiority over Parental Populations in Eastern Iranian Plateau Population of Hares (Mammalia: Lepus Linnaeus, 1758). Journal of Mammalian Evolution. doi:10.1007/s10914-019-09478-5

Morais, E. B., Schönenberger, J., Conti, E., Antonelli, A., & Szövényi, P. (2019). Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae. Applications in Plant Sciences, 7(9), e11290. doi:10.1002/aps3.11290

Müller, N. F., Dudas, G., & Stadler, T. (2019). Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations. Virus Evolution, 5(2). doi:10.1093/ve/vez030

Nederlof, M. A. J., Jansen, H. M., Dahlgren, T. G., Fang, J., Meier, S., Strand, Ã., . . . Smaal, A. C. (2019). Application of polychaetes in (de)coupled integrated aquaculture: production of a high-quality marine resource. Aquaculture Environment Interactions, 11, 221-237. Retrieved from https://www.int-res.com/abstracts/aei/v11/p221-237/

Nilsson, R. H., Anslan, S., Bahram, M., Wurzbacher, C., Baldrian, P., & Tedersoo, L. (2019). Mycobiome diversity: high-throughput sequencing and identification of fungi. Nature Reviews Microbiology, 17(2), 95-109. doi:10.1038/s41579-018-0116-y

Nyman, T., Onstein, R. E., Silvestro, D., Wutke, S., Taeger, A., Wahlberg, N., . . . Malm, T. (2019). The early wasp plucks the flower: disparate extant diversity of sawfly superfamilies (Hymenoptera: ‘Symphyta’) may reflect asynchronous switching to angiosperm hosts. Biological Journal of the Linnean Society, 128(1), 1-19. doi:10.1093/biolinnean/blz071

Passos, P., Azevedo, J. A. R., Nogueira, C. C., Fernandes, R., & Sawaya, R. J. (2019). An Integrated Approach to Delimit Species in the Puzzling Atractus emmeli Complex (Serpentes: Dipsadidae). Herpetological Monographs, 33(1), 1-25. doi:10.1655/herpmonographs-d-18-00007.1

Pérez-Escobar, O. A., Lucas, E., Jaramillo, C., Monro, A., Morris, S. K., Bogarín, D., . . . Antonelli, A. (2019). The Origin and Diversification of the Hyperdiverse Flora in the Chocó Biogeographic Region. Frontiers in Plant Science, 10(1328). doi:10.3389/fpls.2019.01328

Pinder, M. I., Johansson, O. N., Almstedt, A., Kourtchenko, O., Clarke, A. K., Godhe, A., & Töpel, M. (2019). Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema marinoi. Journal of Genomics, 7, 46.

Pinder, M. I. M., Johansson, O. N., Almstedt, A., Kourtchenko, O., Clarke, A. K., Godhe, A., & Töpel, M. (2019). Genome Sequence of <i>Kordia</i> sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom <i>Skeletonema marinoi</i>. Journal of Genomics, 7, 46-49. doi:10.7150/jgen.35061

Rahbek, C., Borregaard, M. K., Antonelli, A., Colwell, R. K., Holt, B. G., Nogues-Bravo, D., . . . Fjeldså, J. (2019). Building mountain biodiversity: Geological and evolutionary processes. Science, 365(6458), 1114-1119. doi:10.1126/science.aax0151

Retter, A., Nilsson, R. H., & Bourlat, S. J. (2019). Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding. Biodiversity Data Journal, 7.

Ritter, C. D., Faurby, S., Bennett, D. J., Naka, L. N., ter Steege, H., Zizka, A., . . . Antonelli, A. (2019). The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia. Scientific Reports, 9(1), 19205. doi:10.1038/s41598-019-55490-3

Ritter, C. D., Häggqvist, S., Karlsson, D., Sääksjärvi, I. E., Muasya, A. M., Nilsson, R. H., & Antonelli, A. (2019). Biodiversity assessments in the 21st century: the potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding. Genome, 62(3), 147-159. doi:10.1139/gen-2018-0096

Ritter, C. D., Zizka, A., Barnes, C., Nilsson, R. H., Roger, F., & Antonelli, A. (2019). Locality or habitat? Exploring predictors of biodiversity in Amazonia. Ecography, 42(2), 321-333. doi:10.1111/ecog.03833

Sahlin, E., Johansson, B., Karlsson, P.-O., Loberg, J., Niklasson, M., & Grahn, P. (2019). Improved Wellbeing for Both Caretakers and Users from A Zoo-Related Nature Based Intervention—A Study at Nordens Ark Zoo, Sweden. International Journal of Environmental Research and Public Health, 16, 4929. doi:10.3390/ijerph16244929

Sayol, F., Lapiedra, O., Ducatez, S., & Sol, D. (2019). Larger brains spur species diversification in birds. Evolution, 73(10), 2085-2093. doi:10.1111/evo.13811

Silvestro, D., Salamin, N., Antonelli, A., & Meyer, X. (2019). Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework. Paleobiology, 45(4), 546-570. doi:10.1017/pab.2019.23

Sjöman, H., Bellan, P., Hannus, S., Barblishvili, T., Darchidze, T., & Sikharulidze, S. (2019). Hunting for a Larger Diversity of Urban Trees in Western Europe—A Case Study from the Southern Caucasus. Arboriculture & Urban Forestry, 45, 221-235.

Sjöman, H., & Östberg, J. (2019). Vulnerability of ten major Nordic cities to potential tree losses caused by longhorned beetles. Urban Ecosystems, 22(2), 385-395. doi:10.1007/s11252-019-0824-8

Sjöman, H., & Östberg, J. (2019). Vulnerability of ten major Nordic cities to potential tree losses caused by longhorned beetles. Urban Ecosystems, 22(2), 385-395. doi:10.1007/s11252-019-0824-8

Smiljanić, J., Edler, D., & Rosvall, M. (2019). Mapping flows on sparse networks with missing links. arXiv preprint arXiv:1912.05377.

Stronen, A. V., Iacolina, L., Pertoldi, C., Kusza, S., Hulva, P., Dykyy, I., . . . Faurby, S. (2019). The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources, 11(4), 499-503. doi:10.1007/s12686-018-1036-x

Sundqvist, M. K., Moen, J., Björk, R. G., Vowles, T., Kytöviita, M.-M., Parsons, M. A., & Olofsson, J. (2019). Experimental evidence of the long-term effects of reindeer on Arctic vegetation greenness and species richness at a larger landscape scale. Journal of Ecology, 107(6), 2724-2736. doi:10.1111/1365-2745.13201

Svantesson, S., Larsson, K.-H., Kõljalg, U., May, T. W., Cangren, P., Nilsson, R. H., & Larsson, E. (2019). Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys, 50. doi:10.3897/mycokeys.50.32432

ter Steege, H., Mota de Oliveira, S., Pitman, N. C. A., Sabatier, D., Antonelli, A., Guevara Andino, J. E., . . . Salomão, R. P. (2019). Towards a dynamic list of Amazonian tree species. Scientific Reports, 9(1), 3501. doi:10.1038/s41598-019-40101-y

Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., . . . van Bodegom, P. M. (2019). Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome. Global Ecology and Biogeography, 28(2), 78-95. doi:10.1111/geb.12783

Töpel, M., Pinder, M. I., Johansson, O. N., Kourtchenko, O., Clarke, A. K., & Godhe, A. (2019). Complete genome sequence of novel Sulfitobacter pseudonitzschiae Strain SMR1, isolated from a culture of the marine diatom Skeletonema marinoi. Journal of Genomics, 7, 7.

Töpel, M., Pinder, M. I., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom Host. Journal of Genomics, 7, 60.

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Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Complete Genome Sequence of the Diatom-Associated Bacterium <em>Sphingorhabdus</em> sp. Strain SMR4y. Microbiology Resource Announcements, 8(29), e00482-00419. doi:10.1128/mra.00482-19

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Genome Sequence of <em>Arenibacter algicola</em> Strain SMS7, Found in Association with the Marine Diatom <em>Skeletonema marinoi</em>. Microbiology Resource Announcements, 8(2), e01461-01418. doi:10.1128/mra.01461-18

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Whole Genome Sequence of <i>Marinobacter salarius</i> Strain SMR5, Shown to Promote Growth in its Diatom Host. Journal of Genomics, 7, 60-63. doi:10.7150/jgen.39039

Vowles, T., & Björk, R. G. (2019). Implications of evergreen shrub expansion in the Arctic. Journal of Ecology, 107(2), 650-655. doi:10.1111/1365-2745.13081

Vrasdonk, E., Palme, U., & Lennartsson, T. (2019). Reference situations for biodiversity in life cycle assessments: conceptual bridging between LCA and conservation biology. The International Journal of Life Cycle Assessment, 24(9), 1631-1642. doi:10.1007/s11367-019-01594-x

Wasalathanthri, N. D., Zaidi, S., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S., . . . Allareddy, V. (2019). Challenging transitions. Science (New York, NY), 363(6422), 24.

Wasalathanthri, N. D., Zaidi, S. S.-e.-A., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S. L., . . . Agarwal, D. (2019). Challenging transitions. Science, 363(6422), 24-26. doi:10.1126/science.aaw2641

Wiemers, M., Chazot, N., Wheat, C. W., Schweiger, O., & Wahlberg, N. (2019). A complete time-calibrated multi-gene phylogeny of the European butterflies. bioRxiv, 844175. doi:10.1101/844175

Wiklund, H., Neal, L., Glover, A. G., Drennan, R., Rabone, M., & Dahlgren, T. G. (2019). Abyssal fauna of polymetallic nodule exploration areas, eastern Clarion-Clipperton Zone, central Pacific Ocean: Annelida: Capitellidae, Opheliidae, Scalibregmatidae, and Travisiidae. ZooKeys, 883. doi:10.3897/zookeys.883.36193

Wurzbacher, C., Larsson, E., Bengtsson-Palme, J., Van den Wyngaert, S., Svantesson, S., Kristiansson, E., . . . Nilsson, R. H. (2019). Introducing ribosomal tandem repeat barcoding for fungi. Molecular Ecology Resources, 19(1), 118-127. doi:10.1111/1755-0998.12944

Zizka, A. (2019). Big data suggest migration and bioregion connectivity as crucial for the evolution of Neotropical biodiversity. Frontiers of Biogeography, 11(2).

Zizka, A., Silvestro, D., Andermann, T., Azevedo, J., Duarte Ritter, C., Edler, D., . . . Antonelli, A. (2019). CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases. Methods in Ecology and Evolution, 10(5), 744-751. doi:10.1111/2041-210x.13152

Zrimec, J., Buric, F., Muhammad, A. S., Chen, R., Verendel, V., Töpel, M., & Zelezniak, A. (2019). Gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. bioRxiv, 792531. doi:10.1101/792531

Zurita-Altamirano, D., Buffetaut, E., Forasiepi, A. M., Kramarz, A., Carrillo, J. D., Aguirre-Fernández, G., . . . Sánchez-Villagra, M. R. (2019). The Allemann collection from the Santa Cruz Formation (late early Miocene), Argentina, in Zurich, Switzerland. Swiss Journal of Palaeontology, 138(2), 259-275. doi:10.1007/s13358-019-00185-5

2018

Abarenkov, K., Somervuo, P., Nilsson, R. H., Kirk, P. M., Huotari, T., Abrego, N., & Ovaskainen, O. (2018). Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences. New Phytologist, 220(2), 517-525. doi:10.1111/nph.15301

Abreu, N. L. d., Alves, R. J. V., Cardoso, S. R. S., Bertrand, Y. J. K., Sousa, F., Hall, C. F., . . . Antonelli, A. (2018). The use of next generation sequencing to solve phylogenetic incongruences in Orchidaceae Juss. PeerJ Preprints, 6, e26530v26531. doi:10.7287/peerj.preprints.26530v1

Andermann, T., Cano, Á., Zizka, A., Bacon, C., & Antonelli, A. (2018). SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments. PeerJ, 6, e5175. doi:10.7717/peerj.5175

Andermann, T., Fernandes, A. M., Olsson, U., Töpel, M., Pfeil, B., Oxelman, B., . . . Antonelli, A. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology, 68(1), 32-46. doi:10.1093/sysbio/syy039 %J Systematic Biology

Anslan, S., Nilsson, R. H., Wurzbacher, C., Baldrian, P., Leho, T., & Bahram, M. (2018). Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys(39), 29-40. doi:10.3897/mycokeys.39.28109

Antonelli, A., Ariza, M., Albert, J., Andermann, T., Azevedo, J., Bacon, C., . . . Edwards, S. V. (2018). Conceptual and empirical advances in Neotropical biodiversity research. PeerJ, 6, e5644. doi:10.7717/peerj.5644

Antonelli, A., Kissling, W. D., Flantua, S. G. A., Bermúdez, M. A., Mulch, A., Muellner-Riehl, A. N., . . . Hoorn, C. (2018). Geological and climatic influences on mountain biodiversity. Nature Geoscience, 11(10), 718-725. doi:10.1038/s41561-018-0236-z

Antonelli, A., & Perrigo, A. (2018). The science and ethics of extinction. Nature Ecology & Evolution, 2(4), 581-581. doi:10.1038/s41559-018-0500-z

Antonelli, A., & Perrigo, A. (2018). The pitfalls of taking science to the public. Science, 359(6373), 283. doi:10.1126/science.aar8468

Antonelli, A., Zizka, A., Carvalho, F. A., Scharn, R., Bacon, C. D., Silvestro, D., & Condamine, F. L. (2018). Amazonia is the primary source of Neotropical biodiversity. Proceedings of the National Academy of Sciences, 115(23), 6034. doi:10.1073/pnas.1713819115

Bacon, C. D., Velásquez-Puentes, F. J., Hinojosa, L. F., Schwartz, T., Oxelman, B., Pfeil, B., . . . Antonelli, A. (2018). Evolutionary persistence in Gunnera and the contribution of southern plant groups to the tropical Andes biodiversity hotspot. PeerJ, 6, e4388. doi:10.7717/peerj.4388

Bacon, C. D., Velásquez-Puentes, F. J., Hoorn, C., & Antonelli, A. (2018). Iriarteeae palms tracked the uplift of Andean Cordilleras. Journal of Biogeography, 45(7), 1653-1663. doi:10.1111/jbi.13350

Bengtsson-Palme, J., Kanger, K., Eriksson, K. M., Hartmann, M., Johnson, R. M., Richardson, R. T., . . . Thorell, K. (2018). Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. Bioinformatics, 34(23), 4027-4033. doi:10.1093/bioinformatics/bty482

Bennett, D. J., Hettling, H., Silvestro, D., Vos, R., & Antonelli, A. (2018). restez: Create and Query a Local Copy of GenBank in R. Journal of Open Source Software, 3(31), 1102.

Bennett, J. D., Hettling, H., Silvestro, D., Zizka, A., Bacon, D. C., Faurby, S., . . . Antonelli, A. (2018). phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. Life, 8(2). doi:10.3390/life8020020

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Rüger, N., Beck, P. S. A., . . . Weiher, E. (2018). Plant functional trait change across a warming tundra biome. Nature, 562(7725), 57-62. doi:10.1038/s41586-018-0563-7

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., . . . Zamin, T. (2018). Tundra Trait Team: A database of plant traits spanning the tundra biome. Global Ecology and Biogeography, 27(12), 1402-1411. doi:10.1111/geb.12821

Cano, Á., Bacon, C. D., Stauffer, F. W., Antonelli, A., Serrano-Serrano, M. L., & Perret, M. (2018). The roles of dispersal and mass extinction in shaping palm diversity across the Caribbean. Journal of Biogeography, 45(6), 1432-1443. doi:10.1111/jbi.13225

Carrillo-Briceño, J. D., Carrillo, J. D., Aguilera, O. A., & Sanchez-Villagra, M. R. (2018). Shark and ray diversity in the Tropical America (Neotropics)—an examination of environmental and historical factors affecting diversity. PeerJ, 6, e5313. doi:10.7717/peerj.5313

Conradie, W., Bittencourt-Silva, G. B., Farooq, H. M., Loader, S. P., Menegon, M., & Tolley, K. A. (2018). New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs. African Journal of Herpetology, 67(1), 61-85. doi:10.1080/21564574.2017.1376714

Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., . . . Baker, W. J. (2018). A roadmap for global synthesis of the plant tree of life. American Journal of Botany, 105(3), 614-622. doi:10.1002/ajb2.1041

Eriksson, J. S., de Sousa, F., Bertrand, Y. J. K., Antonelli, A., Oxelman, B., & Pfeil, B. E. (2018). Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology, 18(1), 9. doi:10.1186/s12862-018-1127-z

Faurby, S., & Antonelli, A. (2018). Evolutionary and ecological success is decoupled in mammals. Journal of Biogeography, 45(10), 2227-2237. doi:10.1111/jbi.13411

Faurby, S., & Araújo, M. B. (2018). Anthropogenic range contractions bias species climate change forecasts. Nature Climate Change, 8(3), 252-256. doi:10.1038/s41558-018-0089-x

Faurby, S., Davis, M., Pedersen, R. Ø., Schowanek, S. D., Antonelli, A., & Svenning, J.-C. (2018). PHYLACINE 1.2: The Phylogenetic Atlas of Mammal Macroecology. Ecology, 99(11), 2626-2626. doi:10.1002/ecy.2443

Ferreira, M., Fernandes, A. M., Aleixo, A., Antonelli, A., Olsson, U., Bates, J. M., . . . Ribas, C. C. (2018). Evidence for mtDNA capture in the jacamar Galbula leucogastra/chalcothorax species-complex and insights on the evolution of white-sand ecosystems in the Amazon basin. Molecular Phylogenetics and Evolution, 129, 149-157. doi:https://doi.org/10.1016/j.ympev.2018.07.007

Franco-Belussi, L., De Oliveira, C., & Sköld, H. N. (2018). Regulation of eye and jaw colouration in three-spined stickleback Gasterosteus aculeatus. Journal of Fish Biology, 92(6), 1788-1804. doi:10.1111/jfb.13620

Guedes, T. B., Sawaya, R. J., Zizka, A., Laffan, S., Faurby, S., Pyron, R. A., . . . Antonelli, A. (2018). Patterns, biases and prospects in the distribution and diversity of Neotropical snakes. Global Ecology and Biogeography, 27(1), 14-21. doi:10.1111/geb.12679

Gunnarsson, B., Wallin, J., & Klingberg, J. (2018). Predation by avian insectivores on caterpillars is linked to leaf damage on oak (Quercus robur). Oecologia, 188(3), 733-741. doi:10.1007/s00442-018-4234-z

Hagen, O., Andermann, T., Antonelli, A., Silvestro, D., & Quental, T. B. (2017). Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, 67(3), 458-474. doi:10.1093/sysbio/syx082 %J Systematic Biology

Hoorn, C., Perrigo, A., & Antonelli, A. (2018). Mountains, Climate and Biodiversity: An Introduction. In C. Hoorn, A. Perrigo, & A. Antonelli (Eds.), Moutnains, Climate and Biodiversity: Wiley.

Jaramillo, C., Montes, C., Cardona, A., Silvestro, D., Antonelli, A., & Bacon, C. D. (2018). Comment (1) on “Formation of the Isthmus of Panama” by O’Dea &lt;em&gt;et al&lt;/em&gt. Science Advances, 3(6), e1602321. doi:10.1126/sciadv.1602321

Korshunova, T., Fletcher, K., Lundin, K., Picton, B., & Martynov, A. (2018). The genus Zelentia is an amphi-boreal taxon expanded to include three new species from the North Pacific and Atlantic oceans (Gastropoda: Nudibranchia: Trinchesiidae). ZooTaxa, 4482, 297. doi:10.11646/zootaxa.4482.2.4

Korshunova, T., Lundin, K., Malmberg, K., Picton, B., & Martynov, A. (2018). First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution. PLOS ONE, 13(3), e0192177. doi:10.1371/journal.pone.0192177

Larsson, E., Kleine, J., Jacobsson, S., & Krikorev, M. (2018). Diversity within the Hygrophorus agathosmus group (Basidiomycota, Agaricales) in Northern Europe. Mycological Progress, 17(12), 1293-1304. doi:10.1007/s11557-018-1445-y

Larsson, E., Vauras, J., & Cripps, C. L. (2018). Inocybe praetervisa group – A clade of four closely related species with partly different geographical distribution ranges in Europe. Mycoscience, 59(4), 277-287. doi:https://doi.org/10.1016/j.myc.2017.11.002

Matos-Maraví, P., Clouse, R. M., Sarnat, E. M., Economo, E. P., LaPolla, J. S., Borovanska, M., . . . Janda, M. (2018). An ant genus-group (Prenolepis) illuminates the biogeography and drivers of insect diversification in the Indo-Pacific. Molecular Phylogenetics and Evolution, 123, 16-25. doi:https://doi.org/10.1016/j.ympev.2018.02.007

Matos-Maraví, P., Matzke, N. J., Larabee, F. J., Clouse, R. M., Wheeler, W. C., Sorger, D. M., . . . Janda, M. (2018). Taxon cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus). Molecular Ecology, 27(20), 4090-4107. doi:10.1111/mec.14835

Melo, W. A., Freitas, C. G., Bacon, C. D., & Collevatti, R. G. (2018). The road to evolutionary success: insights from the demographic history of an Amazonian palm. Heredity, 1.

Metcalfe, D. B., Hermans, T. D. G., Ahlstrand, J., Becker, M., Berggren, M., Björk, R. G., . . . Abdi, A. M. (2018). Patchy field sampling biases understanding of climate change impacts across the Arctic. Nature Ecology & Evolution, 2(9), 1443-1448. doi:10.1038/s41559-018-0612-5

Muscarella, R., Bacon, C. D., Faurby, S., Antonelli, A., Kristiansen, S. M., Svenning, J.-C., & Balslev, H. (2018). Soil fertility and flood regime are correlated with phylogenetic structure of Amazonian palm communities. doi:10.1093/aob/mcy196

Nilsson, R. H., Glöckner, F. O., Saar, I., Tedersoo, L., Kõljalg, U., Abarenkov, K., . . . Picard, K. (2018). The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research, 47(D1), D259-D264. doi:10.1093/nar/gky1022

Nilsson, R. H., Taylor, A. F. S., Adams, R. I., Baschien, C., Johan, B.-P., Cangren, P., . . . Abarenkov, K. (2018). Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys(28), 65-82. doi:10.3897/mycokeys.28.20887

Oxelman, B., Pfeil, B., Olsson, U., Andermann, T., Antonelli, A., Töpel, M., . . . Faircloth, B. C. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology, 68(1), 32-46. doi:10.1093/sysbio/syy039

Pearse, W. D., Barbosa, A. M., Fritz, S. A., Keith, S. A., Harmon, L. J., Harte, J., . . . Davies, T. J. (2018). Building up biogeography: Pattern to process. Journal of Biogeography, 45(6), 1223-1230. doi:10.1111/jbi.13242

Pérez-Consuegra, N., Parra, M., Jaramillo, C., Silvestro, D., Echeverri, S., Montes, C., . . . Escobar, J. (2018). Provenance analysis of the Pliocene Ware Formation in the Guajira Peninsula, northern Colombia: Paleodrainage implications. Journal of South American Earth Sciences, 81, 66-77. doi:https://doi.org/10.1016/j.jsames.2017.11.002

Pérez-Escobar, O. A., Cámara-Leret, R., Antonelli, A., Bateman, R., Bellot, S., Chomicki, G., . . . Jaramillo, C. (2018). Mining threatens Colombian ecosystems. Science, 359(6383), 1475-1475.

Piras, P., Silvestro, D., Carotenuto, F., Castiglione, S., Kotsakis, A., Maiorino, L., . . . Raia, P. (2018). Evolution of the sabertooth mandible: A deadly ecomorphological specialization. Palaeogeography, Palaeoclimatology, Palaeoecology, 496, 166-174. doi:https://doi.org/10.1016/j.palaeo.2018.01.034

Pires Mathias, M., Rankin Brian, D., Silvestro, D., & Quental Tiago, B. (2018). Diversification dynamics of mammalian clades during the K–Pg mass extinction. Biology Letters, 14(9), 20180458. doi:10.1098/rsbl.2018.0458

Ritter, C. D., Zizka, A., Barnes, C., Nilsson, R. H., Roger, F., & Antonelli, A. (2019). Locality or habitat? Exploring predictors of biodiversity in Amazonia. Ecography, 42(2), 321-333. doi:10.1111/ecog.03833

Ritter, C. D., Zizka, A., Roger, F., Tuomisto, H., Barnes, C., Nilsson, R. H., & Antonelli, A. (2018). High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia. PeerJ, 6, e5661. doi:10.7717/peerj.5661

Rolland, J., Silvestro, D., Litsios, G., Faye, L., & Salamin, N. (2018). Clownfishes evolution below and above the species level. Proceedings of the Royal Society B: Biological Sciences, 285(1873), 20171796. doi:10.1098/rspb.2017.1796

Rolland, J., Silvestro, D., Schluter, D., Guisan, A., Broennimann, O., & Salamin, N. (2018). The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity. Nature Ecology & Evolution, 2(3), 459-464. doi:10.1038/s41559-017-0451-9

Ryberg, M., & Nilsson, R. H. (2018). New light on names and naming of dark taxa. MycoKeys(30), 31-39. doi:10.3897/mycokeys.30.24376

Sandom, C. J., Faurby, S., Svenning, J. C., Burnham, D., Dickman, A., Hinks, A. E., . . . Macdonald, D. W. (2018). Learning from the past to prepare for the future: felids face continued threat from declining prey. Ecography, 41(1), 140-152. doi:10.1111/ecog.03303

Silva, G. A. R., Antonelli, A., Lendel, A., Moraes, E. d. M., & Manfrin, M. H. (2018). The impact of early Quaternary climate change on the diversification and population dynamics of a South American cactus species. Journal of Biogeography, 45(1), 76-88. doi:10.1111/jbi.13107

Silvestro, D., & Schnitzler, J. (2018). Inferring macroevolutionary dynamics in mountain systems from fossils. In Mountains, Climate, and Biodiversity: Wiley-Blackwell.

Silvestro, D., Warnock, R. C. M., Gavryushkina, A., & Stadler, T. (2018). Closing the gap between palaeontological and neontological speciation and extinction rate estimates. Nature Communications, 9(1), 5237. doi:10.1038/s41467-018-07622-y

Silvestro, D., Zizka, A., Tejedor, M. F., Antonelli, A., Serrano-Serrano, M. L., Loiseau, O., . . . Höhna, S. (2018). Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors. Systematic Biology, 68(1), 78-92. doi:10.1093/sysbio/syy046 %J Systematic Biology

Sjöman, H., Hirons, A. D., & Bassuk, N. L. (2018). Improving confidence in tree species selection for challenging urban sites: a role for leaf turgor loss. Urban Ecosystems, 21(6), 1171-1188. doi:10.1007/s11252-018-0791-5

Sjöman, H., Hirons, A. D., & Bassuk, N. L. (2018). Magnolias as urban trees – a preliminary evaluation of drought tolerance in seven magnolia species. Arboricultural Journal, 40(1), 47-56. doi:10.1080/03071375.2017.1415554

Stronen, A. V., Iacolina, L., Pertoldi, C., Kusza, S., Hulva, P., Dykyy, I., . . . Faurby, S. (2018). The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources. doi:10.1007/s12686-018-1036-x

Taboada, S., Riesgo, A., Wiklund, H., Paterson, G. L. J., Koutsouveli, V., Santodomingo, N., . . . Glover, A. G. (2018). Implications of population connectivity studies for the design of marine protected areas in the deep sea: An example of a demosponge from the Clarion-Clipperton Zone. Molecular Ecology, 27(23), 4657-4679. doi:10.1111/mec.14888

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2018). Complete Genome Sequence of &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-1&quot;&gt;Loktanella vestfoldensis&lt;/span&gt; Strain SMR4r, a Novel Strain Isolated from a Culture of the Chain-Forming Diatom &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-2&quot;&gt;Skeletonema marinoi&lt;/span&gt. Genome Announcements, 6(12), e01558-01517. doi:10.1128/genomeA.01558-17

Vadell, E., Cavender, J. C., Landolt, J. C., Perrigo, A. L., Liu, P., & Stephenson, S. L. (2018). Five new species of dictyostelid social amoebae (Amoebozoa) from Thailand. BMC Evolutionary Biology, 18(1), 198. doi:10.1186/s12862-018-1328-5

Vowles, T., Lindwall, F., Ekblad, A., Bahram, M., Furneaux, B. R., Ryberg, M., & Björk, R. G. (2018). Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone. Ecology and Evolution, 8(2), 1019-1030. doi:10.1002/ece3.3657

Woutersen, A., Jardine, P. E., Bogotá-Angel, R. G., Zhang, H.-X., Silvestro, D., Antonelli, A., . . . Hoorn, C. (2018). A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon Nitraria L.(Nitrariaceae). PeerJ, 6, e5055. doi:10.7717/peerj.5055

Zizka, A., & Antonelli, A. (2018). Mountains of diversity. In: Nature Publishing Group.

2017

Branch IR, Guyton J, Schmitz A, Barej MF, Naskrecki P, Farooq H, Verburgt L, Rödel MR (2017) Description of a new flat gecko (Squamata: Gekkonidae: Afroedura) from Mount Gorongosa, Mozambique. Zootaxa DOI: 10.11646/zootaxa.4324.1.8

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D (2017) Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, DOI: 10.1093/sysbio/syx082

Wurzbacher C, Nilsson RH, Rautio M, Peura S (2017) Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.ISME Journal. DOI: 10.1038/ismej.2017.54

Sandova M, Nilsson RH, Kolarik M. (2017) Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella clades. Mycological Progress. DOI: 10.1007/s11557-017-1346-5

Nieto-Blázquez ME, Antonelli A, Roncal J (2017) Historical biogeography of endemic seed plant genera in the Caribbean: Did GAARlandia play a role? Ecology and Evolution. DOI: 10.1002/ece3.3521.

Nilsson RH, Sánchez-García M, Ryberg MK, Abarenkov K, Wurzbacher C, Kristiansson E. (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24.

Pessoa MCR, Persson C, Antonelli A, Barbosa MRV (2017) First record of Chomelia triflora (J.H. Kirkbr.) Delprete & Achille (Rubiaceae) from Brazil. Check List 13: 159-162. DOI: 10.15560/13.4.159

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD (2017) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances. DOI: 10.1126/sciadv.1602321

Lehtonen S, Silvestro D, Karger DN, Scotese C, Tuomisto H, Kessler M, Peña C, Wahlberg N, Antonelli A (2017) Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Scientific Reports. DOI: 10.1038/s41598-017-05263-7

Cámara-Leret R, Faurby S, Macía MJ, Balslev H, Göldel B, Svenning JC, Kissling WD, Rønsted N, Saslis-Lagoudakis CH (2017) Fundamental species traits explain provisioning services of tropical American palms. Nature Plants 3:16220. DOI: 10.1038/nplants.2016.220

Sandom CJ, Faurby S, Svenning JC, Burnham D, Dickman A, Hinks A, Macdonald EA, Ripple B, Williams J, Macdonald D (2017) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography. DOI: 10.1111/ecog.03303

Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W (2017) Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society 184: 32-45. DOI: 10.1093/botlinnean/box013

Gonçalez VM, Pfeil BE, Antonelli A, Duarte MC (2017) Two new species of Pavonia (Malvoideae, Malvaceae) from southern Bahia, Brazil. Phytotaxa 305:97-103, doi: 10.11646/phytotaxa.305.2.3

Antonelli A (2017) Drivers of bioregionalisation. Nature Ecology and Evolution 1, 0114 DOI: 10.1038/s41559-017-0114

Antonelli A, Hettling H, Condamine FL, Vos K, Nilsson RH, Sanderson J, Sauquet H, Scharn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA (2017) Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology 66 :152–166 DOI: 10.1093/sysbio/syw066

Edler D, Guedes T, Zizka A, Rosvall M, Antonelli A (2017) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. Systematic Biology 66:197–204. DOI: 10.1093/sysbio/syw087

Perez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarin D, Matzke N, Silvestro D, Antonelli A (2017). Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytologist. DOI: 10.1111/nph.14629.

Ritter CD, McGrate G, Nilsson RH, Fearnside PM, Palme U, Antonelli A (2017) Environmental Impact Statement of biodiversity: Challenges and prospects in biologically diverse environments in Brazilian Amazonia. Biological Conservation 206: 161–168. 
 

Bacon CD, Moraes M, Jaramillo C, Antonelli A (2017). Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras. Molecular Phylogenetics and Evolution 110:127-133. DOI: 10.1016/j.ympev.2017.03.013

Töpel M, Zizka A, Calió MF, Scharn R, Silvestro D, Antonelli A (2017) SpeciesGeoCoder: Fast categorization of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. Systematic Biology 66:145–151. DOI:10.1093/sysbio/syw064

Cruz GAS, Zizka G, Silvestro D, Leme EMC, Schulte K, Benko-Iseppon AM (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution. 107: 152-165.

Maldonado C, Persson C, Alban J, Antonelli A, Rønsted N (2017) Cinchona anderssonii (Rubiaceae), a new overlooked species from Bolivia. PhytoTaxa, 297: 203–208.

Maldonado C, Barnes CJ, Cornett C, Holmfred E, Hansen SH, Persson C, Antonelli A, Rønsted N (2017) Phylogeny Predicts the Quantity of Antimalarial Alkaloids Within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya). Frontiers in Plant Science 8:391.

Radek R, Wurzbacher C, Gisder S, Nilsson RH, Owerfeldt A, Genersch E, Kirk PM, Voigt K (2017) Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31-50. DOI: 10.3897/mycokeys.25.12446

Rova J, Persson C, Ljungstrand E, Antonelli A (2017) Lectotypification of Pentagonia macrophylla (Rubiaceae) revisited. Phytotaxa. DOI:10.11646/phytotaxa.311.3.10

Obst M, Vicario S, Lundin K, Berggren M, Karlsson A, Haines R, Williams A, Goble C, Mathew C, Güntsch A (2017) Marine long-term biodiversity assessment suggests loss of rare species in the Skagerrak and Kattegat region. Marine Biodiversity. DOI:10.1007/s12526-017-0749-5

Pimiento C, Griffin JN, Clements CF, Silvestro D, Varela S, Uhen MD, Jaramillo C (2017) The Pliocene marine megafauna extinction and its impact on functional diversity. Nature Ecology and Evolution DOI: 10.1038/s41559-017-0223-6

Töpel M, Pinder MIM, Johansson ON, Kourtchenko P, Godhe A, Clarke AK (2017) Genome Sequence of Roseovarius mucosus Strain SMR3, Isolated from a Culture of the Diatom Skeletonema marinoi. Genome Announcements 5: 22. DOI: 10.1128/genomeA.00394-17

Pedersen RØ , Faurby S, Svenning J-C (2017) Shallow size-density relations within mammal clades suggest greater intra-guild ecological impact of large-bodied species. Journal of Animal Ecology DOI: 10.1111/1365-2656.12701

Jeppson M, Altés A, Moreno G, Nilsson RH, Loarce Y, de Bustos A, Larsson E (2017) Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33-88. DOI: 10.3897/mycokeys.21.12176

Korshunova, T., Martynov, A., Bakken, T., Evertsen, J., Fletcher, K., Mudianta, I W., Saito, H., Lundin, K., Schrödl, M. & Picton, B. 2017. Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia (Mollusca, Gastropoda): aeolidacean taxonomic reassessment with description of several new families, genera and species. ZooKeys 717: 1–139. doi: 10.3897/zookeys.717.21885

Lundin, K., Korshunova, T., Malmberg, K. & Martynov, A. 2017. Intersections of historical museum collections and modern systematic methods: the case of a relict population of the Arctic nudibranch Dendronotus velifer G.O. Sars 1878 in a Swedish fjord. Contributions to Zoology, 86 (4): 303-318.

Vowles T, Lindwall F, Ekblad A, Bahram M, Ryberg M, Furneaux BR, and Björk RG (2017) Complex effects of mammalian grazing on extramatrical mycelia production in the Scandes forest-tundra ecotone. Ecology and Evolution, accepted. DOI:10.1002/ece3.3657.

Vowles T, Molau U, Gunnarsson B, Hickler T, Klemedtsson L, and Björk RG (2017) Expansion of deciduous shrubs but not evergreen dwarf shrubs inhibited by reindeer in Scandes mountain range. Journal of Ecology, 105(6): 1547-1561.

Vowles T, Lovehav C, Molau U, and Björk RG (2017) Contrasting impacts of reindeer grazing in two tundra grasslands. Environmental Research Letters, 12(3): 034018.