University of Gothenburg

Research publications

The scientific output from our members creates the foundation for the activities at the centre. It is important that information spread concerning biodiversity, the threats against it and possible solutions has a strong scientific foundation. Together we not only explore and discover new things about biodiversity, we also share it in the scientific community as well as to the general public.


Abarenkov K, Nilsson RH, Larsson K-H, Taylor AF, May TW, Frøslev TG, Pawlowska J, Lindahl B, Põldmaa K, Truong C. The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered. Nucleic Acids Research 2023:gkad1039

Abbasi UA, Mattsson E, Nissanka SP, Ali A. Correction to: Species αdiversity promotes but βdiversity restricts aboveground biomass in tropical forests, depending on stand structure and environmental factors. Journal of Forestry Research 2023:1-2

Abdilzadeh R, Prost S, Aliabadian M, Shafaeipour A, Lei F, Ahmed Khan A, Olsson U. Admixture and introgression obscure evolutionary patterns in lesser whitethroat complex (Curruca curruca; Passeriformes; Aves). Journal of Avian biology 2023:e03045

Acero-Murcia AC, Severgnini MR, Fischer E, Provete DB. An evolutionary ecomorphological perspective on the assembly of a neotropical bat metacommunity. Journal of Mammalian Evolution 2023:1-14

Aitken C, Russell D, Wright CW, Richard-Bollans A, Antonelli A, Bitencourt C, Goyder D, Lucas E, Ondo I, Pérez-Escobar OA. Machine learning enhances prediction of plants as potential sources of antimalarials. 2023

Alison J, Payne S, Alexander JM, Bjorkman AD, Clark VR, Gwate O, Huntsaar M, Iseli E, Lenoir J, Mann HMR. Deep learning to extract the meteorological by-catch of wildlife cameras. bioRxiv 2023:2023.09. 25.558780

Alström P, Mohammadi Z, Donald PF, Nymark M, Enbody ED, Irestedt M, Elisha EB, Ndithia HK, Tieleman BI, Engelbrecht D. Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae). Zoological Journal of the Linnean Society 2023:zlad107

Alzate A, Rozzi R, Velasco JA, Robertson DR, Zizka A, Tobias JA, Hill A, Bacon CD, Janzen T, Pellissier L. The evolutionary age-range size relationship is modulated by insularity and dispersal in plants and animals. bioRxiv 2023:2023.11. 11.566377

Antonelli A. Five essentials for area-based biodiversity protection. Nature Ecology & Evolution 2023;7(5):630-31

Antonelli A. Indigenous knowledge is key to sustainable food systems. Nature 2023;613(7943):239-42

Antonelli A, Farooq H, Colli-Silva M, Araújo JP, Freitas AV, Gardner EM, Grace O, Gu S, Marline L, Nesbitt M. People-inspired names remain valuable. Nature Ecology & Evolution 2023:1-2

Antonelli A, Govaerts R, Nic Lughadha E, Onstein RE, Smith RJ, Zizka A. Why plant diversity and distribution matter: Wiley Online Library, 2023.

Apoznański G, Carr A, Gelang M, Kokurewicz T, Rachwald A. Trophic relationship between Salix flowers, Orthosia moths and the western barbastelle. Scientific Reports 2023;13(1):7364

Aros-Mualin D, Guadagno CR, Silvestro D, Kessler M. Light, rather than circadian rhythm, regulates gas exchange in ferns and lycophytes. Plant Physiology 2023;191(3):1634-47

Auld SK, Brand J, Bussière LF. The timings of host diapause and epidemic progression mediate host genetic diversity and future epidemic size in Daphnia–parasite populations. Proceedings of the Royal Society B 2023;290(1995):20222139

Azevedo J, Faurby S, Colli GR, Antonelli A, Werneck FP. Deforestation limits evolutionary rescue under climate change in Amazonian lizards. 2023

Belluardo F, Muñoz-Pajares AJ, Miralles A, Silvestro D, Cocca W, Ratsoavina FM, Villa A, Roberts SH, Mezzasalma M, Zizka A. Slow and steady wins the race: Diversification rate is independent from body size and lifestyle in Malagasy skinks (Squamata: Scincidae: Scincinae). Molecular Phylogenetics and Evolution 2023;178:107635

Bliard L, Dufour P, Griesser M, Covas R. Family-living and cooperative breeding in birds are associated with the number of avian predators. 2023

Brachmann CG, Vowles T, Rinnan R, Björkman MP, Ekberg A, Björk RG. Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic. Biogeosciences 2023;20(19):4069-86

Bravo ME, Brandt MI, Van Der Grient J, Dahlgren TG, Esquete P, Gollner S, Jones DO, Levin LA, Mcclain CR, Narayanaswamy BE. Insights from the management of offshore energy resources: Toward an ecosystem-services based management approach for deep-ocean industries. Frontiers in Marine Science 2023;9:994632

Buschke FT, Hagan JG, Santini L, Coetzee BW. Reply to: Capturing stochasticity properly is key to understanding the nuances of the Living Planet Index. Nature ecology & evolution 2023:1-3

Calderon Del Cid Sr C, Hauffe T, Carrillo JD, Warnock RC, Silvestro D. Challenges in estimating species age from phylogenetic trees. bioRxiv 2023:2023.11. 19.567731

Calvente A, Alves Da Silva AP, Edler D, Carvalho FA, Fantinati MR, Zizka A, Antonelli A. Spiny but photogenic: amateur sightings complement herbarium specimens to reveal the bioregions of cacti. American Journal of Botany 2023

Carlisle E, Janis CM, Pisani D, Donoghue PC, Silvestro D. A timescale for placental mammal diversification based on Bayesian modeling of the fossil record. Current Biology 2023;33(15):3073-82. e3

Cassemiro FA, Albert JS, Antonelli A, Menegotto A, Wüest RO, Cerezer F, Coelho MTP, Reis RE, Tan M, Tagliacollo V. Landscape dynamics and diversification of the megadiverse South American freshwater fish fauna. Proceedings of the National Academy of Sciences 2023;120(2):e2211974120

Cássia-Silva C, Sales LP, Hill AP, Collevatti R, Bacon C, Oliveira RS. Uneven patterns of palm species loss due to climate change are not driven by their sexual systems. Biodiversity and Conservation 2023:1-17

Claudel C, Loiseau O, Silvestro D, Lev‐Yadun S, Antonelli A. Patterns and drivers of heat production in the plant genus Amorphophallus. The Plant Journal 2023

Cox AJ, Hartley IP, Meir P, Sitch S, Dusenge ME, Restrepo Z, González‐Caro S, Villegas JC, Uddling J, Mercado LM. Acclimation of photosynthetic capacity and foliar respiration in Andean tree species to temperature change. New Phytologist 2023;238(6):2329-44

Criado MG, Myers-Smith IH, Bjorkman AD, Elmendorf SC, Normand S, Aastrup P, Aerts R, Alatalo JM, Baeten L, Björk RG. Plant diversity dynamics over space and time in a warming Arctic. 2023

Crous P, Osieck E, Shivas R, Tan Y, Bishop-Hurley S, Raventós FE, Larsson E, Luangsa-Ard J, Pancorbo F, Balashov S. Fungal Planet description sheets: 1478–1549. Persoonia-Molecular Phylogeny and Evolution of Fungi 2023;50(1):158-310

De Araujo Martins C, Pays O, Souza FL, Renaud PC, Valente Neto F, Silveira M, Ochoa Quintero JM, Provete DB, Cavalcante Santos C, Melo I. Biodiversity responses to forest cover loss: taxonomy and metrics matter. bioRxiv 2023:2023.05. 21.541657

De Lima AG, Trovó M, Bacon CD, De Queiroz LP, Souza VC, De Freitas Mansano V. NORDIC JOURNAL OF. 2023

Dufour P, Åkesson S, Hellström M, Hewson C, Lagerveld S, Mitchell L, Chernetsov N, Schmaljohann H, Crochet PA. Correction: The Yellow-browed Warbler (Phylloscopus inornatus) as a model to understand vagrancy and its potential for the evolution of new migration routes. Movement Ecology 2023;11(1):5

Edler D, Holmgren A, Rojas A, Calatayud J, Rosvall M, Antonelli A. Infomap Bioregions 2-Exploring the interplay between biogeography and evolution. arXiv preprint arXiv:2306.17259 2023

Elphinstone C, Hernandez F, Todesco M, Legare J-S, Cheung W, Sokoloff P, Hofgaard A, Christiansen CT, Frei ER, Levesque E. Multiple Pleistocene refugia for Arctic White Heather (Cassiope tetragona) supported by population genomics analyses of contemporary and Little-Ice-Age samples. bioRxiv 2023:2023.07. 05.547859

Farina B, Faurby S, Silvestro D. Dollo meets Bergmann: morphological evolution in secondary aquatic mammals. Proceedings of the Royal Society B 2023;290(2002):20231099

Farooq H, Antonelli A, Faurby S. Future-Proofing the Key Biodiversity AreasFframework. [" Perspectives in Ecology and Conservation"] 2023

Farooq H, Harfoot M, Rahbek C, Geldmann J. The threats to reptiles at global and regional scales. bioRxiv 2023:2023.09. 08.556803

Filho GaP, Guedes TB, De França RC, De Freitas MA, Lourenço-De-Moraes R, Mesquita DO, Nunes PMS, Delfim FR, Dubeux MJM, França FGR. Composition, Species Richness, and Conservation of the Reptiles of the Highly Threatened Northern Brazilian Atlantic Forest. Animal Biodiversity and Conservation in Brazil's Northern Atlantic Forest: Springer, 2023:169-83.

Gaboriau TN, Tobias JA, Silvestro D, Salamin N. Exploring the macroevolutionary signature of asymmetric inheritance at speciation. bioRxiv 2023:2023.02. 28.530448

Gendre M, Hauffe T, Pimiento C, Silvestro D. Benchmarking imputation methods for discrete biological data. bioRxiv 2023:2023.04. 06.535892

Georgieva MN, Rimskaya-Korsakova NN, Krolenko VI, Van Dover CL, Amon DJ, Copley JT, Plouviez S, Ball B, Wiklund H, Glover AG. A tale of two tubeworms: taxonomy of vestimentiferans (Annelida: Siboglinidae) from the Mid-Cayman Spreading Centre. Invertebrate Systematics 2023;37(3):167-91

Georgieva MN, Wiklund H, Ramos DA, Neal L, Glasby CJ, Gunton LM. The annelid community of a natural deep-sea whale fall off eastern Australia. Records of the Australian Museum 2023;75(3):167-213

Goodale UM, Antonelli A, Nelson CR, Chau MM. Seed banks needed to restore ecosystems. Science 2023;379(6628):147-47

Guedes TB, Diniz-Filho JaF, Diele-Viegas LM, Tonini JFR, Antonelli A. Invest in early-career researchers in Brazil. Science 2023;379(6631):448-48

Guenter K, Bussiere L, Gromes R. Dedicating, faking, and surviving: disclosing tensions in how three women university students negotiate collectively celebrated norms across European contexts. International Journal of Science Education 2023:1-21

Gunnarsson B, Hedblom M. Biophilia revisited: nature versus nurture. Trends in Ecology & Evolution 2023

Hagan J, Gamfeldt L, Schrofner-Brunner B. Quantifying how biodiversity affects ecosystem functioning across space and time in natural marine ecosystems. 2023

Hagan JG, Henn JJ, Osterman WH. Plant traits alone are good predictors of ecosystem properties when used carefully. Nature Ecology & Evolution 2023:1-3

Häggi C, Naafs BDA, Silvestro D, Bertassoli Jr DJ, Akabane TK, Mendes VR, Sawakuchi AO, Chiessi CM, Jaramillo CA, Feakins SJ. GDGT distribution in tropical soils and its potential as a terrestrial paleothermometer revealed by Bayesian deep-learning models. Geochimica et Cosmochimica Acta 2023;362:41-64

Henderson A, Fernandez E, Montero O, Clase T, Gratacos X, Bacon CD. Five new species of Coccothrinax (Cryosophileae, Coryphoideae, Arecaceae) from Hispaniola. Phytotaxa 2023;589(2):101-11

Hestetun JT, Ray JL, Murvoll KM, Kjølhamar A, Dahlgren TG. Environmental DNA reveals spatial patterns of fish and plankton diversity at a floating offshore wind farm. Environmental DNA 2023

Hill A, Jiménez MFT, Chazot N, Cássia‐Silva C, Faurby S, Herrera‐Alsina L, Bacon CD. Apparent effect of range size and fruit colour on palm diversification may be spurious. Journal of Biogeography 2023;50(10):1724-36

Jenkins GB, Beckerman AP, Bellard C, Benítez‐López A, Ellison AM, Foote CG, Hufton AL, Lashley MA, Lortie CJ, Ma Z. Reproducibility in ecology and evolution: Minimum standards for data and code. Ecology and Evolution 2023;13(5):e9961

Johannesson K, Leder EH, André C, Dupont S, Eriksson SP, Harding K, Havenhand JN, Jahnke M, Jonsson PR, Kvarnemo C. Ten years of marine evolutionary biology—Challenges and achievements of a multidisciplinary research initiative. Evolutionary Applications 2023;16(2):530-41

Kainulainen K, Sjöman H, Aldén B. Sorbus erythrosepala Kainul., Sjöman, Aldén, sp. nov.(Rosaceae), a new rowan from Yunnan, China. Adansonia 2023;45(21):337-42

Kessous IM, Freitas L. Implementing spatial analyses to measure angiosperm biodiversity from the high-altitude grasslands of the Atlantic forest. Alpine Botany 2023;133(2):163-78

Klingberg J, Strandberg B, Grundström M, Sjöman H, Wallin G, Pleijel H. Variation in Polycyclic Aromatic Compound (PAC) Concentrations in a Norway Spruce Stand Close to a Major Traffic Route—Influence of Distance and Season. Water, Air, & Soil Pollution 2023;234(9):563

Kloh J, Figueredo C, Provete D, Eterovick P. Taste for pollen comes in different shapes: Consumption by tadpoles from three divergent ecomorphotypes. Journal of Zoology 2023

Lagergren F, Björk RG, Andersson C, Belušić D, Björkman MP, Kjellström E, Lind P, Lindstedt D, Olenius T, Pleijel H. High resolution simulations reveal a large loss of Fennoscandian tundra due to climate change. Biogeosciences Discussions 2023;2023:1-35

Li C, Wu Y, Li L, Zhao C, Li B, Wu Y, Wang H, Yan Z. Different techniques reveal the difference of community structure and function of fungi from root and rhizosphere of Salvia miltiorrhiza Bunge. Plant Biology 2023;25(6):848-59

Lidén M, Oxelman B. FLORA OF NEPAL NOTULAE IV: NEW SPECIES AND RESURRECTED NAMES IN SILENE. Edinburgh Journal of Botany 2023;80(367):1-28

Lima AGD, Trovó M, Bacon CD, Queiroz LPD, Souza VC, De Freitas Mansano V. Taxonomic Novelties in Senna ser. Bacillares (Leguminosae, Cassieae). Nordic Journal of Botany 2023;2023(9):e03947

Lind E, Prade T, Sjöman Deak J, Levinsson A, Sjöman H. How green is an urban tree? The impact of species selection in reducing the carbon footprint of park trees in Swedish cities. Frontiers in Sustainable Cities 2023;5:1182408

Mangan R, Bussière LF, Polanczyk RA, Tinsley MC. Increasing ecological heterogeneity can constrain biopesticide resistance evolution. Trends in Ecology & Evolution 2023

Martaeng R, Obst M, Kuklinski P. Phylogeographic study using autonomous reef monitoring structures indicates fast range expansion of the invasive bryozoan Juxtacribrilina mutabilis. Hydrobiologia 2023:1-12

Martins IS, Schrodt F, Blowes SA, Bates AE, Bjorkman AD, Brambilla V, Carvajal-Quintero J, Chow CF, Daskalova GN, Edwards K. Widespread shifts in body size within populations and assemblages. Science 2023;381(6662):1067-71

Martins IS, Schrodt F, Blowes SA, Bates AE, Bjorkman AD, Brambilla V, Carvajal-Quintero J, Chow CF, Daskalova GN, Edwards K. Widespread reductions in body size are paired with stable assemblage biomass. bioRxiv 2023:2023.02. 03.526822

Morin F, Panova MaZ, Schweizer M, Wiechmann M, Eliassen N, Sundberg P, Cluzel‐Burgalat L, Polovodova Asteman I. Hidden aliens: Application of digital PCR to track an exotic foraminifer across the Skagerrak (North Sea) correlates well with traditional morphospecies analysis. Environmental Microbiology 2023

Myers-Smith I, Bjorkman A, Normand S, Blach-Overgaard A, Thomas H, Eskelinen A, Happonen K, Alatalo J, Anadon-Rosell A, Aubin I. Plant traits poorly predict winner and loser shrub species in a warming tundra biome. Nature Communications 2023;14(1):3837-37

Neves B, Ferreira PDL, Prosdocimi F, Kessous IM, Couto DR, Moura RL, Salgueiro F, Costa AF, Bacon CD, Antonelli A. Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat. Botanical Journal of the Linnean Society 2023;203(2):111-22

Nganhane IDN, Naskrecki P, Farooq H, Daniel GM. Millipede consumption and interaction between food preferences and sex in dung beetle Chalconotus convexus (Coleoptera: Scarabaeinae). Austral Ecology 2023

Nilsson HR, Ryberg M, Wurzbacher C, Tedersoo L, Anslan S, Polme S, Spirin V, Mikryukov V, Svantesson S, Hartmann M. What mycologists should talk about when they are talking about the International Code of Nomenclature for algae, fungi, and plants. bioRxiv 2023:2023.02. 25.529721

Nilsson RH, Ryberg M, Wurzbacher C, Tedersoo L, Anslan S, Põlme S, Spirin V, Mikryukov V, Svantesson S, Hartmann M.  How, not if, is the question mycologists should be asking about DNA-based typification. MycoKeys 2023;96:143

Niskanen T, Lücking R, Dahlberg A, Gaya E, Suz LM, Mikryukov V, Liimatainen K, Druzhinina I, Westrip JR, Mueller GM. Pushing the Frontiers of Biodiversity Research: Unveiling the Global Diversity, Distribution, and Conservation of Fungi. Annual Review of Environment and Resources 2023;48

Nneji LM, Azevedo JA, Oyebanji OO, Ma L, Elsen PR, Oladipo SO, Salako G, Puschendorf R, Pringle RM. Patterns of species richness and turnover in endemic amphibians of the Guineo‐Congolian rain forest. Diversity and Distributions 2023

Norman JS, Simeone J, Ramakrishnan N, Antonelli A, Deklerck V. A machine learning approach to estimating the. 2023

Ondo I, Dhanjal-Adams K, Pironon S, Silvestro D, Deklerck V, Grace O, Monro AK, Nicolson N, Walker B, Antonelli A. Plant diversity darkspots for global collection priorities. bioRxiv 2023:2023.09. 12.557387

Osterman J, Benton F, Hellström S, Luderer‐Pflimpfl M, Pöpel‐Eisenbrandt AK, Wild BS, Theodorou P, Ulbricht C, Paxton RJ. Mason bees and honey bees synergistically enhance fruit set in sweet cherry orchards. Ecology and Evolution 2023;13(7):e10289

Osvatic JT, Yuen B, Kunert M, Wilkins L, Hausmann B, Girguis P, Lundin K, Taylor J, Jospin G, Petersen JM. Gene loss and symbiont switching during adaptation to the deep sea in a globally distributed symbiosis. The ISME Journal 2023;17(3):453-66

Oxelman B, Verboom G. Genomic, Phenotypic, and Ecological Data Provide Decisive Support for Multiple Species in the Seriphium plumosum Complex (Gnaphalieae: Asteraceae). 2023

Oyebanji OO, Onditi KO, Azevedo JA, Rahaingoson FR, Nneji LM, Adeleye M, Stull GW, Zhang R, Yi T-S. Biogeographic patterns and environmental drivers of species richness in the globally distributed Millettioid/Phaseoloid clade (Fabaceae, subfamily Papilionoideae). 2023

Pedersen RØ, Faurby S, Svenning JC. Late‐Quaternary megafauna extinctions have strongly reduced mammalian vegetation consumption. Global Ecology and Biogeography 2023

Perez-Escobar OA, Bogarín D, Przelomska NA, Ackerman JD, Balbuena JA, Bellot S, Bühlmann RP, Cabrera B, Cano JA, Charitonidou M. The Origin And Speciation Of Orchids. bioRxiv 2023:2023.09. 10.556973

Pleijel H, Klingberg J, Strandberg B, Sjöman H, Wallin G. Accumulation of antimony and lead in leaves and needles of trees: The role of traffic emissions. Heliyon 2023;9(2)

Portillo JTDM, Azevedo JaR, Barbo FE, Sawaya RJ. Opposite latitudinal gradients for species richness and phylogenetic diversity of endemic snakes in the Atlantic Forest. Current Zoology 2023:zoad032

Puruleia A, Nanvonamuquitxo C, Ernesto M, Jamal A, Amade I, Monia W, Massingue Y, Verburgt L, Faurby S, Antonelli A. Rediscovery of the lost skink Proscelotes aenea and implications for conservation. Scientific Reports 2023;13(1):11261

Quatela A-S, Cangren P, Jafari F, Michel T, De Boer H, Oxelman B. Retrieval of long DNA reads from herbarium specimens. AoB PLANTS 2023:plad074

Rabone M, Wiethase JH, Simon-Lledó E, Emery AM, Jones DO, Dahlgren TG, Bribiesca-Contreras G, Wiklund H, Horton T, Glover AG. How many metazoan species live in the world’s largest mineral exploration region? Current Biology 2023;33(12):2383-96. e5

Rancel-Rodríguez NM, Afonso-Carrillo J, Tronholm A, Sansón M. A New Species from the Canary Islands Increases the Diversity of the Red Algal Genus Pterocladiella in the Northeastern Atlantic. Plants 2023;12(2):416

Ren H, Antonelli A. National botanical gardens at the forefront of global plant conservation. The Innovation 2023;4(5)

Richard-Bollans A, Aitken C, Antonelli A, Bitencourt C, Goyder D, Lucas E, Ondo I, Pérez-Escobar OA, Pironon S, Richardson JE. Machine learning enhances prediction of plants as potential sources of antimalarials. Frontiers in Plant Science 2023;14:1173328

Richards SL, Farooq H, Matimele H, Alves T, Datizua C, Langa C, Massingue A, Osborne J, Rokni S, De Sousa C. Identifying Mozambique's most critical areas for plant conservation: An evaluation of protected areas and Important Plant Areas. Biotropica 2023

Rieder J, Jahnke M, André C, Christiansen H, De Wit P, Faust E, Green L, Jonsson P, Laikre L, Laugen AT. Seascape genomics: assisting marine biodiversity management by combining genetic knowledge with environmental and ecological information. 2023

Rolland J, Henao-Diaz LF, Doebeli M, Germain R, Harmon LJ, Knowles LL, Liow LH, Mank JE, Machac A, Otto SP. Conceptual and empirical bridges between micro-and macroevolution. Nature Ecology & Evolution 2023;7(8):1181-93

Rosenberger AL, Tejedor MF. Why Owl Monkeys Are Pitheciids: Morphology, Adaptations, and the Evolutionary History of the Aotus Lineage. Owl Monkeys: Biology, Adaptive Radiation, and Behavioral Ecology of the Only Nocturnal Primate in the Americas: Springer, 2023:103-54.

Rozzi R, Lomolino MV, Van Der Geer AA, Silvestro D, Lyons SK, Bover P, Alcover JA, Benítez-López A, Tsai C-H, Fujita M. Dwarfism and gigantism drive human-mediated extinctions on islands. Science 2023;379(6636):1054-59

Sánchez‐Domene D, Da Silva FR, Provete DB, Navarro‐Lozano A, Acayaba RD, Montagner CC, Rossa‐Feres DDC, López‐Iborra GM, Almeida EA. Combined effects of landscape composition and agrochemicals on frog communities amid sugarcane‐dominated agroecosystems. Ecological Applications 2023;33(2):e2781

Santi I, Beluche O, Beraud M, Buttigieg PL, Casotti R, Cox CJ, Cunliffe M, Davies N, De Cerio OD, Exter K. European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation. Frontiers in Marine Science 2023;10:1118120

Schrofner‐Brunner B, Hagan JG, Cappelatti L, Hassellöv J, Wißmann M, Gamfeldt L. Macroalgae maintain growth outside their observed distributions: Implications for biodiversity‐ecosystem functioning at landscape scales. Journal of Ecology 2023

Schuster A, Strehlow BW, Perrigo A. Are All Sponges Spongy? The Ocean, Volume 2 2023:142

Shaik Z, Bergh NG, Oxelman B, Verboom GA. Genomic, Phenotypic, and Ecological Data Provide Decisive Support for Multiple Species in the Seriphium plumosum Complex (Gnaphalieae: Asteraceae). Bulletin of the Society of Systematic Biologists 2023;2(2):1-23

Sigmund G, Ågerstrand M, Antonelli A, Backhaus T, Brodin T, Diamond ML, Erdelen WR, Evers DC, Hofmann T, Hueffer T. Addressing chemical pollution in biodiversity research. Global Change Biology 2023;29(12):3240-55

Silvestro D, Goria S, Groom B, Sterner T, Antonelli A. The 30 by 30 biodiversity commitment and financial disclosure: Metrics matter. Available at SSRN 4594937 2023

Silvestro D, Latrille T, Salamin N. Improved estimation of molecular evolution coupling stochastic simulations and deep learning. bioRxiv 2023:2023.09. 08.556821

Sjöman H, Ignell S, Hirons A. Selection of Shrubs for Urban Environments—An Evaluation of Drought Tolerance of 120 Species and Cultivars. HortScience 2023;58(5):573-79

Stewart EC, Bribiesca‐Contreras G, Taboada S, Wiklund H, Ravara A, Pape E, De Smet B, Neal L, Cunha MR, Jones DO. Biodiversity, biogeography, and connectivity of polychaetes in the world's largest marine minerals exploration frontier. Diversity and Distributions 2023

Tedersoo L, Sepping J, Morgunov AS, Kiik M, Esop K, Rosenvald R, Hardwick K, Breman E, Purdon R, Groom B. Towards a co‐crediting system for carbon and biodiversity. Plants, People, Planet 2023

Thomas A, Meudt HM, Larcombe MJ, Igea J, Lee WG, Antonelli A, Tanentzap AJ. Multiple origins of mountain biodiversity in New Zealand's largest plant radiation. Journal of Biogeography 2023;50(5):947-60

Thomas HJ, Myers-Smith IH, Høye TT, Bon MP, Lembrechts J, Walker ER, Björnsdóttir K, Barrio IC, Jónsdóttir IS, Venn SE. Litter quality outweighs climate as a driver of decomposition across the tundra biome. 2023

Tietje M, Antonelli A, Forest F, Govaerts R, Smith SA, Sun M, Baker WJ, Eiserhardt WL. Global hotspots of plant phylogenetic diversity. New Phytologist 2023

Torres Jiménez MF, Chazot N, Emilio T, Uddling J, Antonelli A, Faurby S, Bacon CD. Functional and historical drivers of leaf shape evolution in Palms (Arecaceae). Global Ecology and Biogeography 2023;32(9):1495-507

Truszkowski J, Perrigo A, Broman D, Ronquist F, Antonelli A. Online tree expansion could help solve the problem of scalability in Bayesian phylogenetics. Systematic Biology 2023:syad045

Truszkowski JM, Maor R, Yousuf RB, Biswas S, Chater C, Gasson P, Mcqueen S, Norman M, Saunders J, Simeone J. A probabilistic approach to estimating timber harvest location. 2023

Van Riemsdijk I, Arntzen J, Bucciarelli G, Mccartney-Melstad E, Rafajlović M, Scott P, Toffelmier E, Shaffer H, Wielstra B. Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone. Heredity 2023:1-10

Wiklund H, Rabone M, Glover A, Bribiesca-Contreras G, Drennan R, Stewart E, Boolukos C, King L, Sherlock E, Smith C. Checklist of newly-vouchered annelid taxa from the Clarion-Clipperton Zone, central Pacific Ocean, based on morphology and genetic delimitation. Biodiversity Data Journal 2023;11:e86921

Willcox BK, Potts SG, Brown MJ, Alix A, Al Naggar Y, Chauzat M-P, Costa C, Gekière A, Hartfield C, Hatjina F. Emerging threats and opportunities to managed bee species in European agricultural systems: a horizon scan. Scientific Reports 2023;13(1):18099

Woutersen A, Jardine PE, Silvestro D, Bogotá-Angel RG, Zhang H-X, Meijer N, Bouchal J, Barbolini N, Dupont-Nivet G, Koutsodendris A. The evolutionary history of the Central Asian steppe-desert taxon Nitraria (Nitrariaceae) as revealed by integration of fossil pollen morphology and molecular data. Botanical Journal of the Linnean Society 2023;202(2):195-214

Yow F. Antonelli, Alexandre. Hidden universe: adventures in biodiversity. CHOICE: Current Reviews for Academic Libraries 2023;60(6):588-90

Yurchenko E, Larsson K-H, Riebesehl J, Miettinen O. Steccherinum filiferum sp. nov. from the neotropics, and a new combination for Odontia laxa. Mycotaxon 2023;137(4):773-86


Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH. The curse of the uncultured fungus. MycoKeys 2022;86:177-94

Andermann TAntonelli A, Barrett RL, Silvestro D. Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning. Frontiers in Plant Science2022;13:839407

Andresen LC, Bodé S, Björk RG, Michelsen A, Aerts R, Boeckx P, Cornelissen JHC, Klanderud K, Van Logtestijn RSP, Rütting T. Patterns of free amino acids in tundra soils reflect mycorrhizal type, shrubification, and warming. Mycorrhiza 2022;32:305–313

Antonelli A, Smith RJ, Perrigo A, Crottini A, Hackel J, Testo W, Farooq H, Jiménez MFT, Andela N, Andermann T, Andriamanohera AM, Andriambololonera S, Bachman SP, Bacon CD, Baker WJ, Belluardo F, Birkinshaw C, Borrell JS, Cable S, Canales NA, Carrillo JD, Clegg R, Clubbe C, Cooke RSC, Damasco G, Dhanda S, Edler D, Faurby S, Ferreira PDL, Fisher BL, Forest F, Gardiner LM, Goodman SM, Grace OM, Guedes TB, Henniges MC, Hill R, Lehmann CER, Lowry PP, Marline L, Matos-Maraví P, Moat J, Neves B, Nogueira MGC, Onstein RE, Papadopulos AST, Perez-Escobar OA, Phelps LN, Phillipson PB, Pironon S, Przelomska NAS, Rabarimanarivo M, Rabehevitra D, Raharimampionona J, Rajaonah MT, Rajaonary F, Rajaovelona LR, Rakotoarinivo M, Rakotoarisoa AA, Rakotoarisoa SE, Rakotomalala HN, Rakotonasolo F, Ralaiveloarisoa BA, Ramirez-Herranz M, Randriamamonjy JEN, Randriamboavonjy T, Randrianasolo V, Rasolohery A, Ratsifandrihamanana AN, Ravololomanana N, Razafiniary V, Razanajatovo H, Razanatsoa E, Rivers M, Sayol F, Silvestro D, Vorontsova MS, Walker K, Walker BE, Wilkin P, Williams J, Ziegler T, Zizka A, Ralimanana H. Madagascar’s extraordinary biodiversity: Evolution, distribution, and use. Science 2022;378:eabf0869

Apostolou A,  Velkov B, Green L. The first record of the invasive round goby Neogobius melanostomus in the Aegean Basin, BulgariaJournal of Applied Ichthyology 2022;38:114– 117

Bacon CD, Hill A, ter Steege H, Antonelli A, Damasco G. 2022. The impact of species complexes on tree abundance patterns in Amazonia. American Journal of Botany 2022;109(10):1–4

Bacon CD, Silvestre D, Hoorn C, Bogotá-Ángel G, Antonelli A, Chazot N. The origin of modern patterns of continental diversity in Mauritiinae palms: the Neotropical museum and the Afrotropical graveyard. Biology Letters 2022;18:20220214

Cowell C,  Paton A,  Borrell JS,  Williams C,  Wilkin P,  Antonelli A,  Baker WJ,  Buggs R,  Fay MFGargiuloR,  Grace OM, Kuhnhäuser BG, Woudstra Y, Kersey PJ. Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collectionsPlants, People, Planet 2022; 41):33– 43

Faurby S,  Pedersen Ø,  Svenning J-C, Antonelli A. The counteracting effects of anthropogenic speciation and extinction on mammal species richness and phylogenetic diversityGlobal Ecology and Biogeography  2022;31:1810– 1823

Moharrek F, Taylor PD, Silvestro D, Jenkins HL, Gordon DP, Waeschenbach A. Diversification dynamics of cheilostome bryozoans based on a Bayesian analysis of the fossil record. Palaeontology 2022;65:e12586

Ralimanana H, Perrigo A, Smith RJ, Borrell JS, Faurby S, Rajaonah MT, Randriamboavonjy T, Vorontsova MS, Cooke RSC, Phelps LN, Sayol F, Andela N, Andermann T, Andriamanohera AM, Bachman SP, Bacon CD, Baker WJ, Belluardo F, Birkinshaw C, Cable S, Canales NA, Carrillo JD, Clegg R, Clubbe C, Crottini A, Damasco G, Dhanda S, Edler D, Farooq H, Ferreira PDL, Fisher BL, Forest F, Gardiner LM, Goodman SM, Grace OM, Guedes TB, Hackel J, Henniges MC, Hill R, Lehmann CER, Lowry PP, Marline L, Matos-Maraví P, Moat J, Neves B, Nogueira MGC, Onstein RE, Papadopulos AST, Perez-Escobar OA, Phillipson PB, Pironon S, Przelomska NAS, Rabarimanarivo M, Rabehevitra D, Raharimampionona J, Rajaonary F, Rajaovelona LR, Rakotoarinivo M, Rakotoarisoa AA, Rakotoarisoa SE, Rakotomalala HN, Rakotonasolo F, Ralaiveloarisoa BA, Ramirez-Herranz M, Randriamamonjy JEN, Randrianasolo V, Rasolohery A, Ratsifandrihamanana AN, Ravololomanana N, Razafiniary V, Razanajatovo H, Razanatsoa E, Rivers M, Silvestro D, Testo W, Jiménez MFT, Walker K, Walker BE, Wilkin P, Williams J, Ziegler T, Zizka A, Antonelli A. Madagascar’s extraordinary biodiversity: Threats and opportunities. Science 2022;378:adf1466

Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH. The curse of the uncultured fungus. MycoKeys 2022;86:177-94

Andermann T, Antonelli A, Barrett RL, Silvestro D. Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning. Frontiers in Plant Science 2022;13:839407

Andresen LC, Bodé S, Björk RG, Michelsen A, Aerts R, Boeckx P, Cornelissen JHC, Klanderud K, Van Logtestijn RSP, Rütting T. Patterns of free amino acids in tundra soils reflect mycorrhizal type, shrubification, and warming. Mycorrhiza 2022;32:305–313

Bastos Lima MG, Palme U. The Bioeconomy–Biodiversity Nexus: Enhancing or Undermining Nature’s Contributions to People? Conservation 2022;2(1):7-25

Belluardo F, Scherz MD, Santos B, Andreone F, Antonelli A, Glaw F, Muñoz-Pajares AJ, Randrianirina JE, Raselimanana AP, Vences M, Crottini A. Molecular taxonomic identification and species-level phylogeny of the narrow-mouthed frogs of the genus Rhombophryne (Anura: Microhylidae: Cophylinae) from Madagascar. Systematics and Biodiversity 2022;20(1):1-13

Calió MF, Thode VA, Bacon CD, Silvestro D, Antonelli A, Lohmann LG. Spatio-temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat transitions. Journal of Biogeography2022;49(6):1086-98

Cássia-Silva C, Oliveira RS, Sales LP, Freitas CG, Jardim L, Emilio T, Bacon CD, Collevatti RG. Acaulescence promotes speciation and shapes the distribution patterns of palms in Neotropical seasonally dry habitats. Ecography 2022;2022(3):e06072

Ceron K, Provete DB, Pires MM, Araujo AC, Blüthgen N, Santana DJ. Differences in prey availability across space and time lead to interaction rewiring and reshape a predator–prey metaweb. Ecology 2022;103(8):e3716

Cooke R, Gearty W, Chapman ASA, Dunic J, Edgar GJ, Lefcheck JS, Rilov G, Mcclain CR, Stuart-Smith RD, Kathleen Lyons S, Bates AE. Anthropogenic disruptions to longstanding patterns of trophic-size structure in vertebrates. Nature Ecology & Evolution 2022;6:684-692

Cowell C, Paton A, Borrell JS, Williams C, Wilkin P, Antonelli A, Baker WJ, Buggs R, Fay MF, Gargiulo R, Grace OM, Kuhnhäuser BG, Woudstra Y, Kersey PJ. Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections. Plants, People, Planet 2022;4:33-43

Crous PW, Boers J, …, Larsson E, …, Jeppson M, …, Groenewald JZ. Fungal Planet description sheets: 1383–1435. Persoonia - Molecular Phylogeny and Evolution of Fungi 2022;48(1):261-371

Damasco G, Anhalt M, Perdiz RO, Wittmann F, De Assis RL, Schöngart J, Piedade MTF, Bacon CD, Antonelli A, Fine PVA. Certification of açaí agroforestry increases the conservation potential of the Amazonian tree flora. Agroforestry Systems 2022;96(2):407-16

De Sousa Lira CR, Dos Santos Chikowski R, De Lima VX, Gibertoni TB, Larsson K-H. Allophlebia, a new genus to accomodate Phlebia ludoviciana (Agaricomycetes, Polyporales). Mycological Progress 2022;21(4):47

Entiauspe-Neto OM, Koch C, Guedes TB, Paredero RCB, Tiutenko A, Loebmann D. Unveiling an enigma from the Cerrado: taxonomic revision of two sympatric species of Apostolepis Cope, 1862 (Dipsadidae: Xenodontinae: Elapomorphini) from central Brazil. European Journal of Taxonomy 2022;817(1):143–82

Eriksson M, Rafajlović M. The role of phenotypic plasticity in the establishment of range margins. Philosophical Transactions of the Royal Society B: Biological Sciences 2022;377(1846):20210012

Farooq H, Antonelli A, Faurby S. A call for improving the Key Biodiversity Areas framework. bioRxiv2022:2022.06.21.496934

Ferreira PDL, Batista R, Andermann T, Groppo M, Bacon CD, Antonelli A. Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses. Molecular Phylogenetics and Evolution 2022;169:107432

Flannery-Sutherland JT, Silvestro D, Benton MJ. Global diversity dynamics in the fossil record are regionally heterogeneous. Nature Communications 2022;13(1):2751

Henniges MC, Powell RF, Mian S, Stace CA, Walker K, Gornall RJ, Christenhusz MJ, Brown M, Twyford AD, Hollingsworth PM, Jones L, De Vere N, Antonelli A, Leitch AR, Leitch IJ. A taxonomic, genetic and ecological data resource for the vascular plants of Britain and Ireland. Scientific Data 2022;9:1-8

Herrera F, Testo WL, Field AR, Clark EG, Herendeen PS, Crane PR, Shi G. A permineralized Early Cretaceous lycopsid from China and the evolution of crown clubmosses. New Phytologist 2022;233(5):2310-22

Hoorn C, Palazzesi L, Silvestro D. Exploring the impact of Andean uplift and climate on life evolution and landscape modification: From Amazonia to Patagonia. Global and Planetary Change 2022:103759

Keuschnig C, Larose C, Rudner M, Pesqueda A, Doleac S, Elberling B, Björk RG, Klemedtsson L, Björkman MP. Reduced methane emissions in former permafrost soils driven by vegetation and microbial changes following drainage. Global Change Biology 2022;28(10):3411-25

Klingberg J, Strandberg B, Sjöman H, Taube M, Wallin G, Pleijel H. Polycyclic aromatic hydrocarbon (PAH) accumulation in Quercus palustris and Pinus nigra in the urban landscape of Gothenburg, Sweden. Science of The Total Environment 2022;805:150163

Kõljalg U, Nilsson RH, Jansson AT, Zirk A, Abarenkov K. A price tag on species. Research Ideas and Outcomes2022;8:e86741

Lagomarsino LP, Frankel L, Uribe-Convers S, Antonelli A, Muchhala N. Increased resolution in the face of conflict: phylogenomics of the Neotropical bellflowers (Campanulaceae: Lobelioideae), a rapid plant radiation. Annals of Botany 2022;129(6):723-36

Lembrechts JJ, Van Den Hoogen J, …, Björk RG, Björkman MP, …, Lenoir J. Global maps of soil temperature. Global Change Biology 2022;28(9):3110-44

Martynov A, Lundin K, Korshunova T. Ontogeny, Phylotypic Periods, Paedomorphosis, and Ontogenetic Systematics. Frontiers in Ecology and Evolution 2022;10:806414

Mattsson E, Erlandsson M, Karlsson PE, Holmström H. A Conceptual Landscape-Level Approach to Assess the Impacts of Forestry on Biodiversity. Sustainability 2022;14(7):4214

Mehltreter K, Wachter H, Trabi C, Testo W, Sundue M, Jansen S. Hydathodes in ferns: their phylogenetic distribution, structure and function. Annals of Botany 2022;mcac076

Melo Araújo SC, Ceron K, Guedes TB. Use of geospatial analyses to address snakebite hotspots in mid-northern Brazil – A direction to health planning in shortfall biodiversity knowledge areas. Toxicon 2022;213:43-51

Messas YF, D’angelo GB, Guedes TB, Vasconcellos-Neto J. Integrating citizen nature photography to natural history science: New record of bird-lizard predation. Austral Ecology 2022;47(2):456-59

Moharrek F, Taylor PD, Silvestro D, Jenkins HL, Gordon DP, Waeschenbach A. Diversification dynamics of cheilostome bryozoans based on a Bayesian analysis of the fossil record. Palaeontology 2022;65:e12586

Mousavi H, Cottis T, Hoff G, Solberg SØ. Nitrogen Enriched Organic Fertilizer (NEO) and Its Effect on Ryegrass Yield and Soil Fauna Feeding Activity under Controlled Conditions. Sustainability 2022;14(4):2005

Neubauer TA, Hauffe T, Silvestro D, Scotese CR, Stelbrink B, Albrecht C, Delicado D, Harzhauser M, Wilke T. Drivers of diversification in freshwater gastropods vary over deep time. Proceedings of the Royal Society B: Biological Sciences 2022;289(1968):20212057

Nield CB, Yanes Y, Pigati JS, Rech JA, Von Proschwitz T, Nekola JC. Oxygen isotopes of land snail shells in high latitude regions. Quaternary Science Reviews 2022;279:107382

Nilsson RH, Andersson AF, Bissett A, Finstad AG, Fossøy F, Grosjean M, Hope M, Jeppesen TS, Kõljalg U, Lundin D, Prager M, Suominen S, Svenningsen CS, Schigel D. Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms. Metabarcoding and Metagenomics 2022;6:e84960

Pérez-Escobar OA, Zizka A, Bermúdez MA, Meseguer AS, Condamine FL, Hoorn C, Hooghiemstra H, Pu Y, Bogarín D, Boschman LM, Pennington RT, Antonelli A, Chomicki G. The Andes through time: evolution and distribution of Andean floras. Trends in Plant Science 2022;27(4):364-78

Phukhamsakda C, Nilsson RH, Bhunjun CS, De Farias ARG, Sun Y-R, Wijesinghe SN, Raza M, Bao D-F, Lu L, Tibpromma S, Dong W, Tennakoon DS, Tian X-G, Xiong Y-R, Karunarathna SC, Cai L, Luo Z-L, Wang Y, Manawasinghe IS, Camporesi E, Kirk PM, Promputtha I, Kuo C-H, Su H-Y, Doilom M, Li Y, Fu Y-P, Hyde KD. The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding. Fungal Diversity 2022;114(1):327-86

Pino K, Vallejos-Garrido P, Espinoza-Aravena N, Cooper RB, Silvestro D, Hernández CE, Rodríguez-Serrano E. Regional landscape change triggered by Andean uplift: The extinction of Sparassodonta (Mammalia, Metatheria) in South America. Global and Planetary Change 2022;210:103758

Polovodova Asteman I, Kankainena M, Nordberg K, Lundin K. Too old to be new? A recent discovery of a pteropod Limacina lesueurii (d'Orbigny 1836) at the Swedish west coast (Skagerrak, North Sea). Marine Micropaleontology 2022;171:102083

Reeve AH, Blom MP, Zahl Marki P, Batista R, Olsson U, Edmark VN, Irestedt M, Jønsson KA. The Sulawesi Thrush (Cataponera turdoides; Aves: Passeriformes) belongs to the genus Turdus. Zoologica Scripta2022;51(1):32-40

Ridley R, Jimenez-Mejias P. Incipient insular differentiation of Carex firmula (Cyperaceae, former genus Uncinia) in the Juan Fernández archipelago (Chile). Phytotaxa 2022;533 (no. 5)

Rosenblad MA, Larsson E, Walker A, Thongklang N, Wurzbacher C, Nilsson RH. Evidence for further non-coding RNA genes in the fungal rDNA region. MycoKeys 2022;90:203-213

Sáez L, Mesbah M, López-Alvarado J, Bacchetta G, El Mokni R, Peruzzi L, Oxelman B. Re-establishment of Silene neglecta Ten. (Caryophyllaceae) with taxonomic notes on some related taxa. PhytoKeys 2022;195:143-60

Sanín MJ, Cardona A, Valencia-Montoya WA, Jiménez MFT, Carvalho-Madrigal S, Gómez AC, Bacon CD, Tangarife TR, Jaramillo JS, Zapata S, Valencia V, Valencia JWA, Vargas V, Paris M. Volcanic events coincide with plant dispersal across the Northern Andes. Global and Planetary Change 2022;210:103757

Scharn R, Negri IS, Sundqvist MK, Løkken JO, Bacon CD, Antonelli A, Hofgaard A, Nilsson RH, Björk RG. Limited decadal growth of mountain birch saplings has minor impact on surrounding tundra vegetation. Ecology and Evolution 2022;12(6):e9028

Schmidt AR, Korall P, Krings M, Weststrand S, Bergschneider L, Sadowski E-M, Bechteler J, Rikkinen J, Regalado L. Selaginella in Cretaceous amber from Myanmar. Willdenowia 2022;52:179–245.

Schuster A, Strehlow B, Perrigo A. Are All Sponges Spongy? Frontiers for Young Minds 2022;10:682878

Si X, Cadotte MW, Davies TJ, Antonelli A, Ding P, Svenning J-C, Faurby S. Phylogenetic and functional clustering illustrate the roles of adaptive radiation and dispersal filtering in jointly shaping late-Quaternary mammal assemblages on oceanic islands. Ecology Letters 2022;25(5):1250-62

Silva SV, Andermann T, Zizka A, Kozlowski G, Silvestro D. Global Estimation and Mapping of the Conservation Status of Tree Species Using Artificial Intelligence. Frontiers in Plant Science 2022;13:839792

Silvestro D, Goria S, Sterner T, Antonelli A. Improving biodiversity protection through artificial intelligence. Nature Sustainability 2022;5(5):415-24

Sol D, Olkowicz S, Sayol F, Kocourek M, Zhang Y, Marhounová L, Osadnik C, Corssmit E, Garcia-Porta J, Martin TE, Lefebvre L, Němec P. Neuron numbers link innovativeness with both absolute and relative brain size in birds. Nature Ecology & Evolution 2022

Staude IR, Pereira HM, …, Bjorkman AD, …, Winkler M, Baeten L. Directional turnover towards larger-ranged plants over time and across habitats. Ecology Letters 2022;25(2):466-82

Svantesson S, Syme K, Douch JK, Robinson RM, May TW. The Mouldy Marshmallow” Amaurodon caeruleocaseus (Thelephorales, Basidiomycota) – the first stipitate species in the genus Amaurodon. Sydowia2022;74:181-91

Tedersoo L, Bahram M, Zinger L, Nilsson RH, Kennedy PG, Yang T, Anslan S, Mikryukov V. Best practices in metabarcoding of fungi: From experimental design to results. Molecular Ecology 2022;31(10):2769-95

Tietje M, Antonelli A, Baker WJ, Govaerts R, Smith SA, Eiserhardt WL. Global variation in diversification rate and species richness are unlinked in plants. Proceedings of the National Academy of Sciences2022;119(27):e2120662119

Vuorinen K, Austrheim G, …, Björkman MP, Björk RG, …, Speed JDM. Growth rings show limited evidence for ungulates’ potential to suppress shrubs across the Arctic. Environmental Research Letters 2022;13(No. 3):034013

Wittemann M, Andersson MX, Ntirugulirwa B, Tarvainen L, Wallin G, Uddling J. Temperature acclimation of net photosynthesis and its underlying component processes in four tropical tree species. Tree Physiology2022;tpac002

Zhang Q, Ree RH, Salamin N, Xing Y, Silvestro D. Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae). Systematic Biology 2022;71(1):242–58

Zhang Q, Ree RH, Salamin N, Xing Y, Silvestro D. Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae). Systematic Biology 2022;71(1):242-58

Zizka A, Andermann T, Silvestro D. IUCNN – Deep learning approaches to approximate species' extinction risk. Diversity and Distributions 2022;28(2):227-41


Alström P, Rasmussen PC, Xia C, Zhang L, Liu C, Magnusson J, Shafaeipour A, Olsson U. Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species. The Auk: Ornithological Advances 2021;138(2):ukab014

Alström P, Van Linschooten J, Donald PF, Sundev G, Mohammadi Z, Ghorbani F, Shafaeipour A, Van Den Berg A, Robb M, Aliabadian M, Wei C, Lei F, Oxelman B, Olsson U. Multiple species delimitation approaches applied to the avian lark genus Alaudala. Molecular Phylogenetics and Evolution 2021;154:106994

Alves RRN, Borges AKM, Barboza RRD, Souto WMS, Gonçalves‐Souza T, Provete DB, Albuquerque UP. A global analysis of ecological and evolutionary drivers of the use of wild mammals in traditional medicine. Mammal Review 2021;51(2):293-306

Andermann T, Faurby S, Cooke R, Silvestro D, Antonelli A. iucn_sim: a new program to simulate future extinctions based on IUCN threat status. Ecography 2021;44(2):162-76

Antonelli A. The rise and fall of Neotropical biodiversity. Botanical Journal of the Linnean Society 2021;XX:1-17 or boab061

Antonelli A, Clarkson JJ, Kainulainen K, Maurin O, Brewer GE, Davis AP, Epitawalage N, Goyder DJ, Livshultz T, Persson C, Pokorny L, Straub SCK, Struwe L, Zuntini AR, Forest F, Baker WJ. Settling a family feud: a high-level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes. American Journal of Botany 2021;108(7):1143-65

Apostolou A, Velkov B, Green L. The first record of the invasive round goby Neogobius melanostomus in the Aegean Basin, Bulgaria. Journal of Applied Ichthyology 2021;00:1-4

Azevedo JaR, De C. Nogueira C, Antonelli A, Faurby S. Contrasting patterns of phylogenetic turnover in amphibians and reptiles are driven by environment and geography in Neotropical savannas. Journal of Biogeography 2021;48(8):2008-21

Bacon CD, Gutiérrez-Pinto N, Flantua S, Castellanos Suárez D, Jaramillo C, Pennington RT, Antonelli A. The seasonally dry tropical forest species Cavanillesia chicamochae has a middle Quaternary origin. Biotropica 2021;00(n/a):1-9

Bacon CD, Roncal J, Andermann T, Barnes CJ, Balslev H, Gutiérrez-Pinto N, Morales H, Núñez-Avelleneda LA, Tunarosa N, Antonelli A. Genomic and niche divergence in an Amazonian palm species complex. Botanical Journal of the Linnean Society 2021;197(4):498-512

Batson J, Dudas G, Haas-Stapleton E, Kistler AL, Li LM, Logan P, Ratnasiri K, Retallack H. Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay. eLife 2021;10:e68353

Baucon A, Carvalho CND, Felletti F, Tosadori G, Antonelli A. Small-world dynamics drove Phanerozoic divergence of burrowing behaviors. Geology 2021;49(6):748-52

Bellanger J-M, Lebeuf R, Sesli E, Loizides M, Schwarz C, Moreau P-A, Liimatainen K, Larsson E. Hygrophorus sect. Olivaceoumbrini: new boundaries, extended biogeography and unexpected diversity unravelled by transatlantic studies. Persoonia-Molecular Phylogeny and Evolution of Fungi 2021;46(1):272-312

Bjorkman AD, Wulff A. A reflection on four impactful Ambio papers: The biotic perspective. Ambio 2021;50(6):1145-49

Bogotá-Ángel G, Huang H, Jardine PE, Chazot N, Salamanca S, Banks H, Pardo-Trujillo A, Plata A, Dueñas H, Star W, Langelaan R, Eisawi A, Umeji OP, Enuenwemba LO, Parmar S, Da Silveira RR, Lim JY, Prasad V, Morley RJ, Bacon CD, Hoorn C. Climate and geological change as drivers of Mauritiinae palm biogeography. Journal of Biogeography 2021;48(5):1001-22

Buschke FT, Hagan JG, Santini L, Coetzee BWT. Random population fluctuations bias the Living Planet Index. Nature Ecology & Evolution2021;5(8):1145-52

Carrillo-Briceño JD, Sánchez R, Scheyer TM, Carrillo JD, Delfino M, Georgalis GL, Kerber L, Ruiz-Ramoni D, Birindelli JLO, Cadena E-A, Rincón AF, Chavez-Hoffmeister M, Carlini AA, Carvalho MR, Trejos-Tamayo R, Vallejo F, Jaramillo C, Jones DS, Sánchez-Villagra MR. A Pliocene–Pleistocene continental biota from Venezuela. Swiss Journal of Palaeontology 2021;140(1):9

Carvalho MR, Jaramillo C, Parra FDL, Caballero-Rodríguez D, Herrera F, Wing S, Turner BL, D’apolito C, Romero-Báez M, Narváez P, Martínez C, Gutierrez M, Labandeira C, Bayona G, Rueda M, Paez-Reyes M, Cárdenas D, Duque Á, Crowley JL, Santos C, Silvestro D. Extinction at the end-Cretaceous and the origin of modern Neotropical rainforests. Science 2021;372(6537):63-68

Cássia-Silva C, Freitas CG, Jardim L, Bacon CD, Collevatti RG. In situ radiation explains the frequency of dioecious palms on islands. Annals of Botany 2021;128(2):205-15

Cavender JC, Landolt JC, Vadell EM, Perrigo AL, Stephenson SL, De Basanta DW, Lado C, Liu P. Distribution and ecology of dictyostelids in Madagascar. Phytotaxa 2021;505(2):176-86

Ceron K, Mângia S, Guedes TB, Alvares DJ, Neves MO, De Toledo Moroti M, Torello N, Borges-Martins M, Ferreira VL, Santana DJ. Ecological niche explains the sympatric occurrence of lined ground snakes of the genus Lygophis (Serpentes, Dipsadidae) in the South American dry diagonal. Herpetologica 2021;77(3):239-48

Chazot N, Condamine FL, Dudas G, Peña C, Kodandaramaiah U, Matos-Maraví P, Aduse-Poku K, Elias M, Warren AD, Lohman DJ, Penz CM, Devries P, Fric ZF, Nylin S, Müller C, Kawahara AY, Silva-Brandão KL, Lamas G, Kleckova I, Zubek A, Ortiz-Acevedo E, Vila R, Vane-Wright RI, Mullen SP, Jiggins CD, Wheat CW, Freitas AVL, Wahlberg N. Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies. Nature Communications 2021;12(1):5717

Cowell C, Paton A, Borrell JS, Williams C, Wilkin P, Antonelli A, Baker WJ, Buggs R, Fay MF, Gargiulo R, Grace OM, Kuhnhäuser BG, Woudstra Y, Kersey PJ. Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections. Plants, People, Planet 2021;4:33-43

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Faurby S, Morlo M, Werdelin L. CarniFOSS: A database of the body mass of fossil carnivores. Global Ecology and Biogeography2021;30(10):1958-64

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Hagan JG, Vanschoenwinkel B, Gamfeldt L. We should not necessarily expect positive relationships between biodiversity and ecosystem functioning in observational field data. Ecology Letters 2021;24(12):2537-48

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Hestetun JT, Lanzén A, Skaar KS, Dahlgren TG. The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity. Environmental DNA 2021;3(5):997-1006

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Kessous I, Neves B, Salgueiro F, Costa A. A 100-million-year gap in the knowledge of the evolutionary history of Bromeliaceae: A brief review of fossil records. Feddes Repertorium 2021;132:20-27

Konarska J, Klingberg J, Lindberg F. Applications of dual-wavelength hemispherical photography in urban climatology and urban forestry. Urban Forestry & Urban Greening 2021;58:126964

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Lugosi G, Truszkowski J, Velona V, Zwiernik P. Learning partial correlation graphs and graphical models by covariance queries. Journal of Machine Learning Research 2021;22(203):1-41

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Martinsson S, Malmberg K, Bakken T, Korshunova T, Martynov A, Lundin K. Species delimitation and phylogeny of Doto (Nudibranchia: Dotidae) from the Northeast Atlantic, with a discussion on food specialization. Journal of Zoological Systematics and Evolutionary Research2021;59:1754–74

Matos-Maraví P, Wahlberg N, Freitas AVL, Devries P, Antonelli A, Penz CM. Mesoamerica is a cradle and the Atlantic Forest is a museum of Neotropical butterfly diversity: insights from the evolution and biogeography of Brassolini (Lepidoptera: Nymphalidae). Biological Journal of the Linnean Society 2021;133(3):704-24

Messas YF, D’angelo GB, Guedes TB, Vasconcellos-Neto J. Integrating citizen nature photography to natural history science: New record of bird-lizard predation. Austral Ecology 2021;n/a(n/a)

Middleton O, Svensson H, Scharlemann JPW, Faurby S, Sandom C. CarniDIET 1.0: A database of terrestrial carnivorous mammal diets. Global Ecology and Biogeography 2021;30(6):1175-82

Midolo G, Wellstein C, Faurby S. Individual fitness is decoupled from coarse-scale probability of occurrence in North American trees. Ecography 2021;44(5):789-801

Moiloa NA, Mesbah M, Nylinder S, Manning J, Forest F, De Boer HJ, Bacon CD, Oxelman B. Biogeographic origins of southern African Silene (Caryophyllaceae). Molecular Phylogenetics and Evolution 2021;162:107199

Molino S, Sundue M, Testo W. First record of sporangiasters in the Blechnaceae. American Fern Journal 2021;111(3):196-204

Narváez-Gómez JP, Guedes TB, Lohmann LG. Recovering the drivers of sampling bias in Bignonieae (Bignoniaceae) and identifying priority areas for new survey efforts. Biodiversity and Conservation 2021;30(8):2319-39

Neubauer TA, Hauffe T, Silvestro D, Schauer J, Kadolsky D, Wesselingh FP, Harzhauser M, Wilke T. Current extinction rate in European freshwater gastropods greatly exceeds that of the late Cretaceous mass extinction. Communications Earth & Environment 2021;2(1):article number 97

Nitare J, Ainsworth AM, Larsson E, Parfitt D, Suz LM, Svantesson S, Larsson KH. Four new species of Hydnellum (Thelephorales, Basidiomycota) with a note on Sarcodon illudens. Fungal systematics and evolution 2021;7:233-54

Noordeloos ME, Lorås J, Eidissen SE, Brandrud TE, Bendiksen E, Morozova O, Weholt JBJØ, Jansen GM, Larsson E, Dima B. Three new Entoloma species of the Cyanula clade from (sub) alpine habitats in Northern Norway and Sweden. Sydowia 2021;73:185-96

Parooq H, Uetz P. Can we identify European snakes by color patterns? SALAMANDRA 2021;57(4):520-28

Pautienius A, Dudas G, Simkute E, Grigas J, Zakiene I, Paulauskas A, Armonaite A, Zienius D, Slyzius E, Stankevicius A. Bulk milk tank samples are suitable to assess circulation of tick-borne encephalitis virus in high endemic Areas. Viruses 2021;13(9):1772

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Pirnay J-P, Selhorst P, Hong SL, Cochez C, Potter B, Maes P, Petrillo M, Dudas G, Claes V, Van Der Beken Y, Verbeken G, Degueldre J, Dellicour S, Cuypers L, T’sas F, Van Den Eede G, Verhasselt B, Weuts W, Smets C, Mertens J, Geeraerts P, Ariën KK, André E, Neirinckx P, Soentjens P, Baele G. Variant analysis of SARS-CoV-2 genomes from Belgian military personnel engaged in overseas missions and operations. Viruses 2021;13(7):1359

Pleijel H, Klingberg J, Nerentorp M, Broberg MC, Nyirambangutse B, Munthe J, Wallin G. Mercury accumulation in leaves of different plant types–the significance of tissue age and specific leaf area. Biogeosciences Discussions 2021:1-27

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Pomar-Gómez AD, Cordeiro P, Guedes TB, Passos P. The striking endemism pattern of the species-richest snake genus Atractus(Dipsadidae: Serpentes) highlights the hidden diversity in the Andes. Amphibia-Reptilia 2021;42(2):189-200

Ramseyer TN, Tronholm A, Turner T, Brandt ME, Smith TB. Elevated nutrients and herbivory negatively affect Dictyota growth dynamics. Marine Ecology Progress Series 2021;671:81-95

Ribeiro CV, Oliveira LP, Batista R, De Sousa M. UCEasy: A software package for automating and simplifying the analysis of ultraconserved elements (UCEs). Biodiversity Data Journal 2021;9:e78132

Richards C, Cooke RSC, Bates AE. Biological traits of seabirds predict extinction risk and vulnerability to anthropogenic threats. Global Ecology and Biogeography 2021;30(5):973-86

Richling I, Von Proschwitz T. Identification problems of travelling snail species—new exotic introductions to tropical greenhouses in Gothenburg, Sweden (Gastropoda: Achatinellidae, Strobilopsidae, Helicarionidae). PeerJ 2021;9:e11185

Ritter CD, Forster D, Azevedo JaR, Antonelli A, Nilsson RH, Trujillo ME, Dunthorn M. Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding. Microbial Ecology 2021;82(3):746-60

Ritter CD, Ribas CC, Menger J, Borges SH, Bacon CD, Metzger JP, Bates J, Cornelius C. Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird. Landscape Ecology 2021;36(9):2565-82

Rojas-Morales JA, González JV, Cepeda-Duque JC, Marín-Martínez M, Díaz-Ayala RF, Guedes TB. On delicate night hunters: observations of the feeding behaviour of Imantodes cenchoa (Linnaeus, 1758) and Sibon nebulatus (Linnaeus, 1758) through staged and natural encounters (Serpentes: Dipsadidae: Dipsadinae). Herpetology Notes 2021;14:717-23

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Santana A, Silva SM, Batista R, Sampaio I, Aleixo A. Molecular systematics, species limits, and diversification of the genus Dendrocolaptes(Aves: Furnariidae): Insights on biotic exchanges between dry and humid forest types in the Neotropics. Journal of Zoological Systematics and Evolutionary Research 2021;59(1):277-93

Sayol F, Cooke RSC, Pigot AL, Blackburn TM, Tobias JA, Steinbauer MJ, Antonelli A, Faurby S. Loss of functional diversity through anthropogenic extinctions of island birds is not offset by biotic invasions. Science Advances 2021;7(46):eabj5790

Scharn R, Brachmann CG, Patchett A, Reese H, Bjorkman AD, Alatalo JM, Björk RG, Jägerbrand AK, Molau U, Björkman MP. Vegetation responses to 26 years of warming at Latnjajaure Field Station, northern Sweden. Arctic Science 2021;0(0):1-20

Scharn R, Little CJ, Bacon CD, Alatalo JM, Antonelli A, Björkman MP, Molau U, Nilsson RH, Björk RG. Decreased soil moisture due to warming drives phylogenetic diversity and community transitions in the tundra. Environmental Research Letters 2021:To cite this article: Ruud Scharn et al 2021 Environ. Res. Lett. 16 064031

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Silvestro D, Bacon C, Ding W-N, Zhang Q, Donoghue P, Antonelli A, Xing Y. Fossil data support a pre-Cretaceous origin of flowering plants. Nature Ecology & Evolution 2021;5:449–57

SjöMan H, Levinsson A, Emilsson T, Ibrahimova A, Alizade V, Douglas P, WiströM BR. Evaluation of Alnus subcordata for urban environments through assessment of drought and flooding tolerance. Dendrobiology 2021;85:39–50

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Spirin V, Malysheva V, Schoutteten N, Viner I, Miettinen O, Nordén J, Ryvarden L, Kotiranta H, Verbeken A, Weiß M, Larsson K-H. Studies in the Basidiodendron caesiocinereum complex (Auriculariales, Basidiomycota). Mycological Progress 2021;20(10):1275-96

Spirin V, Volobuev S, Malysheva V, Miettinen O, Kotiranta H, Larsson K-H. Identity of the subalpine – subarctic corticiod fungus Megalocystidium leucoxanthum (Russulales, Basidiomycota) and six related species. Plant Ecology and Evolution2021;154(2):231–244. 

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Suissa JS, Sundue MA, Testo WL. Mountains, climate and niche heterogeneity explain global patterns of fern diversity. Journal of Biogeography 2021;48(6):1296-308

Sulistyo BP, Larsson K-H, Haelewaters D, Ryberg M. Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov. Fungal Biology 2021;125(3):239-55

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Zapata S, Zapata-Henao M, Cardona A, Jaramillo C, Silvestro D, Oboh-Ikuenobe F. Long-term topographic growth and decay constrained by 3D thermo-kinematic modeling: Tectonic evolution of the Antioquia Altiplano, Northern Andes. Global and Planetary Change2021;203:103553

Zizka A, Antonelli A, Silvestro D. sampbias, a method for quantifying geographic sampling biases in species distribution data. Ecography2021;44(1):25-32

Zizka A, Rydén O, Edler D, Klein J, Perrigo A, Silvestro D, Jagers SC, Lindberg SI, Antonelli A. Bio-Dem, a tool to explore the relationship between biodiversity data availability and socio-political conditions in time and space. Journal of Biogeography2021;48(11):2715-26

Zizka A, Silvestro D, Vitt P, Knight TM. Automated conservation assessment of the orchid family with deep learning. Conservation Biology2021;35(3):897-908

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Andermann T, Strömberg C, Antonelli A, Silvestro D. The evolution of open habitats in North America revealed by deep learning models. bioRxiv 2021:2021.09.03.458822

Antonelli A, Goria S, Sterner T, Silvestro D. Optimising biodiversity protection through artificial intelligence. bioRxiv2021:2021.04.13.439752

Bredin YK, Hess LL, Scabin AB, Dunthorn M, Haugaasen T, Peres CA, Nilsson HR, Antonelli A, Ritter CD. Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia, Brazil. bioRxiv 2021:2021.04.28.441795

Hill A, Torres Jiménez MF, Chazot N, Cássia-Silva C, Faurby S, Bacon C. Fruit colour and range size interact to influence diversification. bioRxiv 2021:2021.10.26.465838

Meseguer AS, Michel A, Fabre P-H, Pérez-Escobar OA, Chomicki G, Riina R, Antonelli A, Antoine P-O, Delsuc F, Condamine FL. The Origins and Drivers of Neotropical Diversity. bioRxiv 2021:2021.02.24.432517

Richards C, Cooke RS, Bowler DE, Boerder K, Bates AE. Bycatch mitigation could prevent strong changes in the ecological strategies of seabird communities across the globe. bioRxiv 2021:2021.05.24.445481

Shaik Z, Bergh NG, Oxelman B, Verboom GA. Minimal clustering and species delimitation based on multi-locus alignments vs SNPs: the case of the Seriphium plumosum L. complex (Gnaphalieae: Asteraceae). bioRxiv 2021:2021.03.21.436318

Silvestro D, Bacon CD, Ding W, Zhang Q, Donoghue PCJ, Antonelli A, Xing Y. Unbiased clade age estimation using a Bayesian Brownian Bridge. bioRxiv 2021:2021.04.03.438104

Thom G, Moreira LR, Batista R, Gehara M, Aleixo A, Smith BT. Genomic architecture controls spatial structuring in Amazonian birds. bioRxiv2021:2021.12.01.470789

Torres Jiménez MF, Chazot N, Emilio T, Uddling Fredin J, Antonelli A, Faurby S, Bacon CD. Temperature predicts leaf shape in palms (Arecaceae). bioRxiv 2021:2021.10.26.465896

Zizka A, Andermann T, Silvestro D. IUCNN-deep learning approaches to approximate species' extinction risk. bioRxiv2021:2021.06.17.448832

Staude I, Pereira HM, Daskalova GN, Bernhardt-Römermann M, Diekmann M, Pauli H, Van Calster H, Vellend M, Bjorkman AD, …, Baeten L. Consistent replacement of small-by large-ranged plant species across habitats. EcoEvoRxiv Preprints 2021

Dudas G, Hong SL, …, Baele G. Preprint: Travel-driven emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nature Communications 2021;12(1):5769


Andermann, T., Faurby, S., Turvey, S. T., Antonelli, A., & Silvestro, D. (2020). The past and future human impact on mammalian diversity. Science Advances, 6(36), eabb2313. doi:10.1126/sciadv.abb2313

Andermann, T., Torres, M., Matos-Maraví, P., Batista, R., Blanco-Pastor, J., Gustafsson, A. L. S., . . . Antonelli, A. (2020). A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project. Frontiers in Genetics, 10, 1407. doi:10.3389/fgene.2019.01407

Andersson AF, Bissett A, Finstad AG, Fossøy F, Grosjean M, Hope M, Kõljalg U, Lundin D, Nilsson RN,Prager M, Stjernegaard T, Svenningsen C & Schigel D (2020) Publishing sequence-derived datathrough biodiversity data platforms [Community review draft]. Copenhagen: GBIF Secretariat.

Antonelli, A., al, e., & Liu, U. (2020). Kew State of the Worlds Plants and Fungi.

Antonelli, A., Hiscock, S., Lennon, S., Simmonds, M., Smith, R., & Young, B. (2020). Protecting and sustainably using the world’s plants and fungi. Plants, People, Planet, 2, 368-370. doi:10.1002/ppp3.10150

Azevedo, J. A., Collevatti, R., Jaramillo, C., Stromberg, C., Guedes, T., Matos-Maraví, P., . . . Antonelli, A. (2020). On the Young Savannas in the Land of Ancient Forests. In (pp. 271-298).
DOI: 10.1007/978-3-030-31167-4_12

Azevedo, J. A., Guedes, T., Nogueira, C., Passos, P., Sawaya, R., Prudente, A., . . . Antonelli, A. (2020). Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes. Ecography, 2, 1-12. doi:10.1111/ecog.04815

Bakker, F., Antonelli, A., Clarke, J., Cook, J., Edwards, S., Ericson, P., . . . Källersjö, M. (2020). The Global Museum: natural history collections and the future of evolutionary science and public education. PeerJ, 8, e8225. doi:10.7717/peerj.8225

Barbosa, S., Lima, M., & Guedes, T. (2020). First record of Thamnodynastes almae Franco & Ferreira, 2002 (Serpentes, Dipsadidae, Xenodontinae) in the state of Piauí, northeastern Brazil, and updated distribution map. Check List, 16, 1323-1328. doi:10.15560/16.5.1323

Batista, R., Olsson, U., Andermann, T., Aleixo, A., Ribas, C., & Antonelli, A. (2020). Phylogenomics and biogeography of the world's thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history. Proceedings of the Royal Society B: Biological Sciences, 287, 20192400. doi:10.1098/rspb.2019.2400

Belote, T., Faurby, S., Brennan, A., Carter, N., Dietz, M., Hahn, B., . . . Gage, J. (2020). Mammal species composition reveals new insights into Earth’s remaining wilderness. Frontiers in Ecology and the Environment, 18. doi:10.1002/fee.2192

Bennett, D., Hettling, H., Silvestro, D., Vos, R., & Antonelli, A. (2020). outsider: Install and run programs, outside of R, inside of R. Journal of Open Source Software, 5, 2038. doi:10.21105/joss.02038

Bowler, D. E., Bjorkman, A. D., Dornelas, M., Myers-Smith, I. H., Navarro, L. M., Niamir, A., . . . Bates, A. E. (2020). Mapping human pressures on biodiversity across the planet uncovers anthropogenic threat complexes. People and Nature, 2(2), 380-394. doi:

Canales, N.A., Nikolaj T., Hansen, G., Cornett, C., Walker, K., Driver, F., Antonelli, A., Maldonado, C., Nesbitt, M., Barnes, C.J., Rønsted, N. (2020). Historical chemical annotations of Cinchonabark collections are comparable to results from current day high-pressure liquid chromatography technologies. Journal of Ethnopharmacology249: 112375. DOI:

Carrillo, J. D., Faurby, S., Silvestro, D., Zizka, A., Jaramillo, C., Bacon, C. D., & Antonelli, A. (2020). Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange. Proceedings of the National Academy of Sciences, 117(42), 26281-26287. doi:10.1073/pnas.2009397117

Cássia-Silva, C., Freitas, C. G., Lemes, L. P., Paterno, G. B., Dias, P. A., Bacon, C. D., & Collevatti, R. G. (2020). Higher evolutionary rates in life-history traits in insular than in mainland palms. Scientific Reports, 10(1), 21125. doi:10.1038/s41598-020-78267-5

Chen, S.-C., Poschlod, P., Antonelli, A., Liu, U., & Dickie, J. (2020). Trade‐off between seed dispersal in space and time. Ecology Letters. doi:10.1111/ele.13595

Condamine, F., Silvestro, D., Koppelhus, E., & Antonelli, A. (2020). The rise of angiosperms pushed conifers to decline during global cooling. Proceedings of the National Academy of Sciences, 117. doi:10.1073/pnas.2005571117

Cripps, C. L., Larsson, E., & Vauras, J. (2020). Nodulose-spored Inocybe from the Rocky Mountain alpine zone molecularly linked to European and type specimens. Mycologia, 112(1), 133-153. doi:10.1080/00275514.2019.1677419

Daru, B. H., Farooq, H., Antonelli, A., & Faurby, S. (2020). Endemism patterns are scale dependent. Nature Communications, 11(1), 2115. doi:10.1038/s41467-020-15921-6

Daskalova, G. N., Myers-Smith, I. H., Bjorkman, A. D., Blowes, S. A., Supp, S. R., Magurran, A. E., & Dornelas, M. (2020). Landscape-scale forest loss as a catalyst of population and biodiversity change. Science, 368(6497), 1341-1347. doi:10.1126/science.aba1289

Debat, V., Chazot, N., Jarosson, S., Blandin, P., & Llaurens, V. (2020). What drives the diversification of eyespots in Morpho butterflies? Disentangling developmental and selective constraints from neutral evolution. Frontiers in Ecology and Evolution, 8, 112.

Doughty, C. E., Prys-Jones, T. O., Faurby, S., Abraham, A. J., Hepp, C., Leshyk, V., . . . Galetti, M. (2020). Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases. Ecography, 43(8), 1107-1117. doi:

Ducatez, S., Lefebvre, L., Sayol, F., Audet, J.-N., & Sol, D. (2020). Host Cognition and Parasitism in Birds: A Review of the Main Mechanisms. Frontiers in Ecology and Evolution, 8(102). doi:10.3389/fevo.2020.00102

Durkin, L., Jansson, T., Sanchez, M., Khomich, M., Ryberg, M., Kristiansson, E., & Nilsson, R. H. (2020). When mycologists describe new species, not all relevant information is provided (clearly enough). MycoKeys, 72. doi:10.3897/mycokeys.72.56691

Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2020). raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 1-5. doi:10.1111/2041-210X.13512

Eggens, F., Jafari, F., Thollesson, M., Crameri, S., Zarre, S., & Oxelman, B. (2020). Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section. PhytoKeys, 159, 1-34. doi:10.3897/phytokeys.159.51500

Eggens, F., Jafari, F., Zarre, S., & Oxelman, B. (2020). (2755) Proposal to conserve the name Silene linearis Decne. against S. linearis Sweet (Caryophyllaceae). Taxon, 69(4), 825-826.
DOI: 10.1002/tax.12302

Eilertsen, M. H., Dahlgren, T. G., & Rapp, H. T. (2020). A New Species of Osedax (Siboglinidae: Annelida) From Colonization Experiments in the Arctic Deep Sea. Frontiers in Marine Science, 7(443). doi:10.3389/fmars.2020.00443

Entiauspe-Neto, O., Guedes, T., Loebmann, D., & de Lema, T. (2020). Taxonomic Status of Two Simultaneously Described Apostolepis Cope, 1862 Species (Dipsadidae: Elapomorphini) from Caatinga Enclaves Moist Forests, Brazil. Journal of Herpetology, 54, 225. doi:10.1670/19-053

Entiauspe-Neto, O., Koch, C., Guedes, T., & Tiutenko, A. (2020). Revisiting the taxonomic status of Apostolepis sanctaeritae, a forgotten Neotropical dipsadid snake. SALAMANDRA, 56, 14.
ISSN 0036–337

Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae).
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Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Two ancient genome duplication events shape diversity in Hibiscus L. (Malvaceae).
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Ernfors, M., Björk, R. G., Nousratpour, A., Rayner, D., Weslien, P., & Klemedtsson, L. (2020). Greenhouse gas dynamics of a well-drained afforested agricultural peatland. Boreal Environment Research, 25, 65-77.
ISSN 1797-2469

Farooq, H., Azevedo, J., Belluardo, F., Nanvonamuquitxo, C., Bennett, D., Moat, J., . . . Antonelli, A. (2020). WEGE: A new metric for ranking locations for biodiversity conservation. Diversity and Distributions, 26(11), 1456-1466. doi:

Farooq, H., Azevedo, J. A. R., Soares, A., Antonelli, A., & Faurby, S. (2020). Mapping Africa’s Biodiversity: More of the Same Is Just Not Good Enough. Systematic Biology. doi:10.1093/sysbio/syaa090

Farooq, H., & Uetz, P. (2020). Identifying Australian snakes by color patterns. VERTEBRATE ZOOLOGY, 70(3), 473-482.
DOI: 10.26049/VZ70-3-2020-15

Faurby, S., Silvestro, D., Werdelin, L., & Antonelli, A. (2020). Brain expansion in early hominins predicts carnivore extinctions in East Africa. Ecology Letters, 23(3), 537-544. doi:

García Criado, M., Myers-Smith, I. H., Bjorkman, A. D., Lehmann, C. E. R., & Stevens, N. (2020). Woody plant encroachment intensifies under climate change across tundra and savanna biomes. Global Ecology and Biogeography, 29(5), 925-943. doi:

Gomes, D. F., Azevedo, J., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15(12), e0243210. doi:10.1371/journal.pone.0243210

Grace, O., Lovett, J., Gore, C., Moat, J., Ondo, I., Pironon, S., . . . Wilkin, P. (2020). R E V I E W Plant Power: Opportunities and challenges for meeting sustainable energy needs from the plant and fungal kingdoms Societal Impact Statement. Plants People Planet, 2, 446-462. doi:10.1002/ppp3.10147

Guedes, T., Azevedo, J. A., Bacon, C., Provete, D., & Antonelli, A. (2020). Diversity, Endemism, and Evolutionary History of Montane Biotas Outside the Andean Region. In (pp. 299-328).
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Guedes, T., & Guedes, A. (2020). Notes on court and copula, fertility, nest, eggs and hatchlings of the Caatinga’s black snake Boiruna sertaneja Zaher, 1996 (Serpentes: Dipsadidae) from northeastern Brazil. Anais da Academia Brasileira de Ciências, 92, e20190588. doi:10.1590/0001-3765202020190588

Guedes, T., Queiroz, A., Souza, P., & Hamdan, B. (2020). Updated distribution maps with new records of Trilepida fuliginosa (Passos, Caramaschi & Pinto, 2006) and Drepanoides anomalus (Jan, 1863) (Squamata, Serpentes) in the state of Maranhão, northeastern Brazil. Check List, 16, 423-433. doi:10.15560/16.2.423

Hamdan, B., Guedes, T., Carrasco, P., & Melville, J. (2020). A complex biogeographic history of diversification in Neotropical lancehead pitvipers (Serpentes, Viperidae). Zoologica Scripta, 49, 145-158. doi:10.1111/zsc.12398

Hannus, S., Hirons, Baxter, McAllister, H., Wiström, B., & Sjöman, H. (2020). Intraspecific drought tolerance of Betula pendula genotypes: an evaluation using leaf turgor loss in a botanical collection. Trees, 13. doi:10.1007/s00468-020-02059-7

Helmstetter, A. J., Kamga, S. M., Bethune, K., Lautenschläger, T., Zizka, A., Bacon, C. D., . . . Couvreur, T. L. P. (2020). Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae). Plants, 9(4), 549.

Hestetun, J. T., Bye-Ingebrigtsen, E., Nilsson, R. H., Glover, A. G., Johansen, P.-O., & Dahlgren, T. G. (2020). Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna metabarcoding. Marine Biodiversity, 50(5), 70. doi:10.1007/s12526-020-01093-5

Hirons, A., Watkins, H., Baxter, T., Miesbauer, J., Male-Muñoz, A., Martin, K., . . . Sjöman, H. (2020). Using botanic gardens and arboreta to help identify urban trees for the future. Plants People Planet, 1-12. doi:10.1002/ppp3.10162

Id, D., Azevedo, J. A., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15, 1-45. doi:10.1371/journal.pone.0243210

Kõljalg, U., Nilsson, R. H., Schigel, D., Tedersoo, L., Larsson, K.-H., May, T., . . . Abarenkov, K. (2020). The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa. Microorganisms, 8. doi:10.3390/microorganisms8121910

Korshunova, T., Bakken, T., Grøtan, V. V., Johnson, K. B., Lundin, K., & Martynov, A. (2020). A synoptic review of the family Dendronotidae (Mollusca: Nudibranchia): a multilevel organismal diversity approach. Contributions to Zoology, 90(1), 93-153. doi:

Korshunova, T., Fletcher, K., Picton, B., Lundin, K., Kashio, S., Sanamyan, N., . . . Martynov, A. (2020). The Emperor’s Cadlina, hidden diversity and gill cavity evolution: new insights for the taxonomy and phylogeny of dorid nudibranchs (Mollusca: Gastropoda). Zoological Journal of the Linnean Society, 189(3), 762-827. doi:10.1093/zoolinnean/zlz126

Korshunova, T., Malmberg, K., Prkić, J., Petani, A., Fletcher, K., Lundin, K., & Martynov, A. (2020). Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity. ZooKeys, 917. doi:10.3897/zookeys.917.47444

Korshunova, T. A., Sanamyan, N. P., Sanamyan, K. E., Bakken, T., Lundin, K., Fletcher, K., & Martynov, A. V. (2020). Biodiversity hotspot in cold waters: a review of the genus Cuthonella with descriptions of seven new species (Mollusca, Nudibranchia). Contributions to Zoology, 90(2), 216-283. doi:

Larsson, E., & Bendiksen, K. (2020). Hygrophorus betulae, a new species described from subalpine birch forest in Finland. Karstenia, 58(1), 1-9.
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Larsson, K.-H., Larsson, E., Ryvarden, L., & Spirin, V. (2020). Some new combinations of corticioid fungi (Basidiomycota. Agaricomycetes). 40, 113-117.
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Lembrechts, J. J., Aalto, J., Ashcroft, M. B., De Frenne, P., Kopecký, M., Lenoir, J., . . . Nijs, I. (2020). SoilTemp: A global database of near-surface temperature. Global Change Biology, 26(11), 6616-6629. doi:

Lim, J. Y., Svenning, J.-C., Göldel, B., Faurby, S., & Kissling, W. D. (2020). Frugivore-fruit size relationships between palms and mammals reveal past and future defaunation impacts. Nature Communications, 11(1), 4904. doi:10.1038/s41467-020-18530-5

Ljungstrand, E. & Persson, C. (2020). Dipsacaeae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

López, G. M., Gelfo, J. N., Bauzá, N., Bond, M., & Tejedor, M. F. (2020). Biochron and Diversity of Archaeopithecidae (Mammalia, Notoungulata) and a New Genus and Species from the Eocene of Patagonia, Argentina. Ameghiniana, 57(2), 103-116, 114. Retrieved from

Martynov, A., Lundin, K., Picton, B., Fletcher, K., Malmberg, K., & Korshunova, T. (2020). Multiple paedomorphic lineages of soft-substrate burrowing invertebrates: parallels in the origin of Xenocratena and Xenoturbella. PLOS ONE, 15(1), e0227173. doi:10.1371/journal.pone.0227173

Mashburn, B., Perez, A. J., Persson, C., Zapata, N., Cevallos, D., & Muchhala, N. (2020). Burmeistera quimiensis (Lobelioideae, Campanulaceae): A new species from the Cordillera del Cóndor range in southeast Ecuador. Phytotaxa, 433(1), 67-74.

Melo, W., Vieira, L., Novaes, E., Bacon, C., & Collevatti, R. (2020). Selective Sweeps Lead to Evolutionary Success in an Amazonian Hyperdominant Palm. Frontiers in Genetics, 11. doi:10.3389/fgene.2020.596662

Mohammadi, Z., Aliabadian, M., Ghorbani, F., Moghaddam, F. Y., Lissovsky, A. A., Obst, M., & Olsson, U. (2020). Unidirectional Introgression and Evidence of Hybrid Superiority over Parental Populations in Eastern Iranian Plateau Population of Hares (Mammalia: Lepus Linnaeus, 1758). Journal of Mammalian Evolution, 27(4), 723-743. doi:10.1007/s10914-019-09478-5

Moleón, M., Sánchez-Zapata, J., Donázar, J., Revilla, E., Martín-López, B., Gutiérrez-Cánovas, T., . . . Svenning, J.-C. (2020). Rethinking megafauna. Proceedings of the Royal Society B: Biological Sciences, 287, 20192643. doi:10.1098/rspb.2019.2643

Molia, A., Larsson, E., Jeppson, M., Læssøe, T., & Larsson, K. H. (2020). Elaphomyces section Elaphomyces (Eurotiales, Ascomycota) - taxonomy and phylogeny of North European taxa, with the introduction of three new species. Fungal systematics and evolution, 5, 283-300. doi:10.3114/fuse.2020.05.14

Neves, B., Kessous, I. M., Moura, R. L., Couto, D. R., Zanella, C. M., Antonelli, A., . . . Costa, A. F. (2020). Pollinators drive floral evolution in an Atlantic Forest genus. AoB PLANTS, 12(5). doi:10.1093/aobpla/plaa046

Neves, B., Zanella, C., Kessous, I., Uribbe, F., Salgueiro, F., Bered, F., . . . Costa, A. (2019). Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest. Journal of Biogeography, 47. doi:10.1111/jbi.13746

Nic Lughadha, E., Bachman, S., Leão, T., Forest, F., Halley, J., Moat, J., . . . Walker, B. (2020). Extinction risk and threats to plants and fungi. Plants People Planet, 2, 389-408. doi:10.1002/ppp3.10146

Olofsson, M., Hagan, J. G., Karlson, B., & Gamfeldt, L. (2020). Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient. Scientific Reports, 10(1), 17666. doi:10.1038/s41598-020-74428-8

Paton, A., Antonelli, A., Carine, M., Forzza, R., Davies, N., Demissew, S., . . . Dickie, J. (2020). REVIEW Plant and fungal collections: Current status, future perspectives. Plants People Planet. doi:10.1002/ppp3.10141

Pearce, T., Antonelli, A., Brearley, F., Couch, C., Forzza, R., Gonçalves, S., . . . Breman, E. (2020). International collaboration between collections‐based institutes for halting biodiversity loss and unlocking the useful properties of plants and fungi. Plants, People, Planet, 2, 515-534. doi:10.1002/ppp3.10149

Pedersen, R. Ø., Faurby, S., & Svenning, J.-C. (2020). Extinctions have strongly reduced the mammalian consumption of primary productivity.
DOI: 10.1101/2020.10.15.341297

Peixoto, M., Guedes, T., Silva, E., Feio, R., & Romano, P. (2020). Biogeographic tools help to assess the effectiveness of protected areas for the conservation of anurans in the Mantiqueira mountain range, Southeastern Brazil. Journal for Nature Conservation, 54, 125799. doi:10.1016/j.jnc.2020.125799

Pérez-Escobar, O., Bellot, S., Gros-Balthazard, M., Flowers, J., Nesbitt, M., Ryan, P., . . . Baker, W. (2020). Archaeogenomics of a ~2,100-year-old Egyptian leaf provides a new timestamp on date palm domestication.
DOI: 10.1101/2020.11.26.400408

Pérez-Escobar, O., Richardson, J.-E., Howes, M.-J., Lucas, E., Róman, N., Collemare, J., . . . Antonelli, A. (2020). Untapped resources for medical research. Science, 369, 781-782. doi:10.1126/science.abc8085

Perrigo, A. L., Vadell, E. M., Cavender, J. C., Landolt, J. C., Liu, P., & Stephenson, S. L. (2020). Additional new species suggest high dictyostelid diversity on Madagascar. Mycologia, 112(5), 1026-1042. doi:10.1080/00275514.2020.1802641

Persson, C. (2020). Caprifoliaceae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

Pimiento, C., Bacon, C. D., Silvestro, D., Hendy, A., Jaramillo, C., Zizka, A., . . . Antonelli, A. (2020). Selective extinction against redundant species buffers functional diversity. Proceedings of the Royal Society B: Biological Sciences, 287(1931), 20201162. doi:doi:10.1098/rspb.2020.1162

Pimiento, C., Leprieur, F., Silvestro, D., Lefcheck, J. S., Albouy, C., Rasher, D. B., . . . Griffin, J. N. (2020). Functional diversity of marine megafauna in the Anthropocene. Science Advances, 6(16), eaay7650. doi:10.1126/sciadv.aay7650

Pironon, S., Borrell, J., Ondo, I., Douglas, R., Phillips, C., Khoury, C. K., . . . Antonelli, A. (2020). Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity. Plants, 9, 1128. doi:10.3390/plants9091128

Ritter, C., Ribas, C., Menger, J., Borges, S., Bacon, C., Metzger, J., . . . Cornelius, C. (2020). Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird.

Ritter, C. D., Dunthorn, M., Anslan, S., de Lima, V. X., Tedersoo, L., Nilsson, R. H., & Antonelli, A. (2020). Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecology and Evolution, 10(14), 7509-7524. doi:

Robert, S. C. C., Felix, E., & Amanda, E. B. (2020). Ecological distinctiveness of birds and mammals at the global scale. Global Ecology and Conservation, 22, e00970. doi:

Rojas-Morales, J. A., Ramírez-Chaves, H. E., & Guedes, T. B. (2020). New record for Colombia, updated distribution map, and comments on the defensive behavior of Thamnodyastes dixoni Bailey & Thomas, 2007 (Serpentes, Dipsadidae, Xenodontinae). Check List, 16, 169.
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Sjöman, H., Hirons, A. D., & Bassuk, N. L. (2018). Magnolias as urban trees – a preliminary evaluation of drought tolerance in seven magnolia species. Arboricultural Journal, 40(1), 47-56. doi:10.1080/03071375.2017.1415554

Stronen, A. V., Iacolina, L., Pertoldi, C., Kusza, S., Hulva, P., Dykyy, I., . . . Faurby, S. (2018). The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources. doi:10.1007/s12686-018-1036-x

Taboada, S., Riesgo, A., Wiklund, H., Paterson, G. L. J., Koutsouveli, V., Santodomingo, N., . . . Glover, A. G. (2018). Implications of population connectivity studies for the design of marine protected areas in the deep sea: An example of a demosponge from the Clarion-Clipperton Zone. Molecular Ecology, 27(23), 4657-4679. doi:10.1111/mec.14888

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2018). Complete Genome Sequence of &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-1&quot;&gt;Loktanella vestfoldensis&lt;/span&gt; Strain SMR4r, a Novel Strain Isolated from a Culture of the Chain-Forming Diatom &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-2&quot;&gt;Skeletonema marinoi&lt;/span&gt. Genome Announcements, 6(12), e01558-01517. doi:10.1128/genomeA.01558-17

Vadell, E., Cavender, J. C., Landolt, J. C., Perrigo, A. L., Liu, P., & Stephenson, S. L. (2018). Five new species of dictyostelid social amoebae (Amoebozoa) from Thailand. BMC Evolutionary Biology, 18(1), 198. doi:10.1186/s12862-018-1328-5

Vowles, T., Lindwall, F., Ekblad, A., Bahram, M., Furneaux, B. R., Ryberg, M., & Björk, R. G. (2018). Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone. Ecology and Evolution, 8(2), 1019-1030. doi:10.1002/ece3.3657

Woutersen, A., Jardine, P. E., Bogotá-Angel, R. G., Zhang, H.-X., Silvestro, D., Antonelli, A., . . . Hoorn, C. (2018). A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon Nitraria L.(Nitrariaceae). PeerJ, 6, e5055. doi:10.7717/peerj.5055

Zizka, A., & Antonelli, A. (2018). Mountains of diversity. In: Nature Publishing Group.


Branch IR, Guyton J, Schmitz A, Barej MF, Naskrecki P, Farooq H, Verburgt L, Rödel MR (2017) Description of a new flat gecko (Squamata: Gekkonidae: Afroedura) from Mount Gorongosa, Mozambique. Zootaxa DOI: 10.11646/zootaxa.4324.1.8

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D (2017) Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, DOI: 10.1093/sysbio/syx082

Wurzbacher C, Nilsson RH, Rautio M, Peura S (2017) Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.ISME Journal. DOI: 10.1038/ismej.2017.54

Sandova M, Nilsson RH, Kolarik M. (2017) Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella clades. Mycological Progress. DOI: 10.1007/s11557-017-1346-5

Nieto-Blázquez ME, Antonelli A, Roncal J (2017) Historical biogeography of endemic seed plant genera in the Caribbean: Did GAARlandia play a role? Ecology and Evolution. DOI: 10.1002/ece3.3521.

Nilsson RH, Sánchez-García M, Ryberg MK, Abarenkov K, Wurzbacher C, Kristiansson E. (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24.

Pessoa MCR, Persson C, Antonelli A, Barbosa MRV (2017) First record of Chomelia triflora (J.H. Kirkbr.) Delprete & Achille (Rubiaceae) from Brazil. Check List 13: 159-162. DOI: 10.15560/13.4.159

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD (2017) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances. DOI: 10.1126/sciadv.1602321

Lehtonen S, Silvestro D, Karger DN, Scotese C, Tuomisto H, Kessler M, Peña C, Wahlberg N, Antonelli A (2017) Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Scientific Reports. DOI: 10.1038/s41598-017-05263-7

Cámara-Leret R, Faurby S, Macía MJ, Balslev H, Göldel B, Svenning JC, Kissling WD, Rønsted N, Saslis-Lagoudakis CH (2017) Fundamental species traits explain provisioning services of tropical American palms. Nature Plants 3:16220. DOI: 10.1038/nplants.2016.220

Sandom CJ, Faurby S, Svenning JC, Burnham D, Dickman A, Hinks A, Macdonald EA, Ripple B, Williams J, Macdonald D (2017) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography. DOI: 10.1111/ecog.03303

Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W (2017) Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society 184: 32-45. DOI: 10.1093/botlinnean/box013

Gonçalez VM, Pfeil BE, Antonelli A, Duarte MC (2017) Two new species of Pavonia (Malvoideae, Malvaceae) from southern Bahia, Brazil. Phytotaxa 305:97-103, doi: 10.11646/phytotaxa.305.2.3

Antonelli A (2017) Drivers of bioregionalisation. Nature Ecology and Evolution 1, 0114 DOI: 10.1038/s41559-017-0114

Antonelli A, Hettling H, Condamine FL, Vos K, Nilsson RH, Sanderson J, Sauquet H, Scharn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA (2017) Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology 66 :152–166 DOI: 10.1093/sysbio/syw066

Edler D, Guedes T, Zizka A, Rosvall M, Antonelli A (2017) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. Systematic Biology 66:197–204. DOI: 10.1093/sysbio/syw087

Perez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarin D, Matzke N, Silvestro D, Antonelli A (2017). Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytologist. DOI: 10.1111/nph.14629.

Ritter CD, McGrate G, Nilsson RH, Fearnside PM, Palme U, Antonelli A (2017) Environmental Impact Statement of biodiversity: Challenges and prospects in biologically diverse environments in Brazilian Amazonia. Biological Conservation 206: 161–168. 

Bacon CD, Moraes M, Jaramillo C, Antonelli A (2017). Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras. Molecular Phylogenetics and Evolution 110:127-133. DOI: 10.1016/j.ympev.2017.03.013

Töpel M, Zizka A, Calió MF, Scharn R, Silvestro D, Antonelli A (2017) SpeciesGeoCoder: Fast categorization of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. Systematic Biology 66:145–151. DOI:10.1093/sysbio/syw064

Cruz GAS, Zizka G, Silvestro D, Leme EMC, Schulte K, Benko-Iseppon AM (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution. 107: 152-165.

Maldonado C, Persson C, Alban J, Antonelli A, Rønsted N (2017) Cinchona anderssonii (Rubiaceae), a new overlooked species from Bolivia. PhytoTaxa, 297: 203–208.

Maldonado C, Barnes CJ, Cornett C, Holmfred E, Hansen SH, Persson C, Antonelli A, Rønsted N (2017) Phylogeny Predicts the Quantity of Antimalarial Alkaloids Within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya). Frontiers in Plant Science 8:391.

Radek R, Wurzbacher C, Gisder S, Nilsson RH, Owerfeldt A, Genersch E, Kirk PM, Voigt K (2017) Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31-50. DOI: 10.3897/mycokeys.25.12446

Rova J, Persson C, Ljungstrand E, Antonelli A (2017) Lectotypification of Pentagonia macrophylla (Rubiaceae) revisited. Phytotaxa. DOI:10.11646/phytotaxa.311.3.10

Obst M, Vicario S, Lundin K, Berggren M, Karlsson A, Haines R, Williams A, Goble C, Mathew C, Güntsch A (2017) Marine long-term biodiversity assessment suggests loss of rare species in the Skagerrak and Kattegat region. Marine Biodiversity. DOI:10.1007/s12526-017-0749-5

Pimiento C, Griffin JN, Clements CF, Silvestro D, Varela S, Uhen MD, Jaramillo C (2017) The Pliocene marine megafauna extinction and its impact on functional diversity. Nature Ecology and Evolution DOI: 10.1038/s41559-017-0223-6

Töpel M, Pinder MIM, Johansson ON, Kourtchenko P, Godhe A, Clarke AK (2017) Genome Sequence of Roseovarius mucosus Strain SMR3, Isolated from a Culture of the Diatom Skeletonema marinoi. Genome Announcements 5: 22. DOI: 10.1128/genomeA.00394-17

Pedersen RØ , Faurby S, Svenning J-C (2017) Shallow size-density relations within mammal clades suggest greater intra-guild ecological impact of large-bodied species. Journal of Animal Ecology DOI: 10.1111/1365-2656.12701

Jeppson M, Altés A, Moreno G, Nilsson RH, Loarce Y, de Bustos A, Larsson E (2017) Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33-88. DOI: 10.3897/mycokeys.21.12176

Korshunova, T., Martynov, A., Bakken, T., Evertsen, J., Fletcher, K., Mudianta, I W., Saito, H., Lundin, K., Schrödl, M. & Picton, B. 2017. Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia (Mollusca, Gastropoda): aeolidacean taxonomic reassessment with description of several new families, genera and species. ZooKeys 717: 1–139. doi: 10.3897/zookeys.717.21885

Lundin, K., Korshunova, T., Malmberg, K. & Martynov, A. 2017. Intersections of historical museum collections and modern systematic methods: the case of a relict population of the Arctic nudibranch Dendronotus velifer G.O. Sars 1878 in a Swedish fjord. Contributions to Zoology, 86 (4): 303-318.

Vowles T, Lindwall F, Ekblad A, Bahram M, Ryberg M, Furneaux BR, and Björk RG (2017) Complex effects of mammalian grazing on extramatrical mycelia production in the Scandes forest-tundra ecotone. Ecology and Evolution, accepted. DOI:10.1002/ece3.3657.

Vowles T, Molau U, Gunnarsson B, Hickler T, Klemedtsson L, and Björk RG (2017) Expansion of deciduous shrubs but not evergreen dwarf shrubs inhibited by reindeer in Scandes mountain range. Journal of Ecology, 105(6): 1547-1561.

Vowles T, Lovehav C, Molau U, and Björk RG (2017) Contrasting impacts of reindeer grazing in two tundra grasslands. Environmental Research Letters, 12(3): 034018.