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University of Gothenburg

Research publications

The scientific output from our members creates the foundation for the activities at the centre. It is important that information spread concerning biodiversity, the threats against it and possible solutions have a strong scientific foundation. Together we not only explore and discover new things about biodiversity, we also share it in the scientific community as well as to the general public.

2020

Andermann, T., Faurby, S., Turvey, S. T., Antonelli, A., & Silvestro, D. (2020). The past and future human impact on mammalian diversity. Science Advances, 6(36), eabb2313. doi:10.1126/sciadv.abb2313

Andermann, T., Torres, M., Matos-Maraví, P., Batista, R., Blanco-Pastor, J., Gustafsson, A. L. S., . . . Antonelli, A. (2020). A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project. Frontiers in Genetics, 10, 1407. doi:10.3389/fgene.2019.01407

Andersson AF, Bissett A, Finstad AG, Fossøy F, Grosjean M, Hope M, Kõljalg U, Lundin D, Nilsson RN,Prager M, Stjernegaard T, Svenningsen C & Schigel D (2020) Publishing sequence-derived datathrough biodiversity data platforms [Community review draft]. Copenhagen: GBIF Secretariat.https://doi.org/10.35035/doc-vf1a-nr22.

Antonelli, A., al, e., & Liu, U. (2020). Kew State of the Worlds Plants and Fungi.
DOI: https://doi.org/10.34885/172

Antonelli, A., Hiscock, S., Lennon, S., Simmonds, M., Smith, R., & Young, B. (2020). Protecting and sustainably using the world’s plants and fungi. Plants, People, Planet, 2, 368-370. doi:10.1002/ppp3.10150

Azevedo, J. A., Collevatti, R., Jaramillo, C., Stromberg, C., Guedes, T., Matos-Maraví, P., . . . Antonelli, A. (2020). On the Young Savannas in the Land of Ancient Forests. In (pp. 271-298).
DOI: 10.1007/978-3-030-31167-4_12

Azevedo, J. A., Guedes, T., Nogueira, C., Passos, P., Sawaya, R., Prudente, A., . . . Antonelli, A. (2020). Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes. Ecography, 2, 1-12. doi:10.1111/ecog.04815

Bakker, F., Antonelli, A., Clarke, J., Cook, J., Edwards, S., Ericson, P., . . . Källersjö, M. (2020). The Global Museum: natural history collections and the future of evolutionary science and public education. PeerJ, 8, e8225. doi:10.7717/peerj.8225

Barbosa, S., Lima, M., & Guedes, T. (2020). First record of Thamnodynastes almae Franco & Ferreira, 2002 (Serpentes, Dipsadidae, Xenodontinae) in the state of Piauí, northeastern Brazil, and updated distribution map. Check List, 16, 1323-1328. doi:10.15560/16.5.1323

Batista, R., Olsson, U., Andermann, T., Aleixo, A., Ribas, C., & Antonelli, A. (2020). Phylogenomics and biogeography of the world's thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history. Proceedings of the Royal Society B: Biological Sciences, 287, 20192400. doi:10.1098/rspb.2019.2400

Belote, T., Faurby, S., Brennan, A., Carter, N., Dietz, M., Hahn, B., . . . Gage, J. (2020). Mammal species composition reveals new insights into Earth’s remaining wilderness. Frontiers in Ecology and the Environment, 18. doi:10.1002/fee.2192

Bennett, D., Hettling, H., Silvestro, D., Vos, R., & Antonelli, A. (2020). outsider: Install and run programs, outside of R, inside of R. Journal of Open Source Software, 5, 2038. doi:10.21105/joss.02038

Bowler, D. E., Bjorkman, A. D., Dornelas, M., Myers-Smith, I. H., Navarro, L. M., Niamir, A., . . . Bates, A. E. (2020). Mapping human pressures on biodiversity across the planet uncovers anthropogenic threat complexes. People and Nature, 2(2), 380-394. doi:https://doi.org/10.1002/pan3.10071

Canales, N.A., Nikolaj T., Hansen, G., Cornett, C., Walker, K., Driver, F., Antonelli, A., Maldonado, C., Nesbitt, M., Barnes, C.J., Rønsted, N. (2020). Historical chemical annotations of Cinchonabark collections are comparable to results from current day high-pressure liquid chromatography technologies. Journal of Ethnopharmacology249: 112375. DOI: https://doi.org/10.1016/j.jep.2019.112375

Carrillo, J. D., Faurby, S., Silvestro, D., Zizka, A., Jaramillo, C., Bacon, C. D., & Antonelli, A. (2020). Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange. Proceedings of the National Academy of Sciences, 117(42), 26281-26287. doi:10.1073/pnas.2009397117

Cássia-Silva, C., Freitas, C. G., Lemes, L. P., Paterno, G. B., Dias, P. A., Bacon, C. D., & Collevatti, R. G. (2020). Higher evolutionary rates in life-history traits in insular than in mainland palms. Scientific Reports, 10(1), 21125. doi:10.1038/s41598-020-78267-5

Chen, S.-C., Poschlod, P., Antonelli, A., Liu, U., & Dickie, J. (2020). Trade‐off between seed dispersal in space and time. Ecology Letters. doi:10.1111/ele.13595

Condamine, F., Silvestro, D., Koppelhus, E., & Antonelli, A. (2020). The rise of angiosperms pushed conifers to decline during global cooling. Proceedings of the National Academy of Sciences, 117. doi:10.1073/pnas.2005571117

Cripps, C. L., Larsson, E., & Vauras, J. (2020). Nodulose-spored Inocybe from the Rocky Mountain alpine zone molecularly linked to European and type specimens. Mycologia, 112(1), 133-153. doi:10.1080/00275514.2019.1677419

Daru, B. H., Farooq, H., Antonelli, A., & Faurby, S. (2020). Endemism patterns are scale dependent. Nature Communications, 11(1), 2115. doi:10.1038/s41467-020-15921-6

Daskalova, G. N., Myers-Smith, I. H., Bjorkman, A. D., Blowes, S. A., Supp, S. R., Magurran, A. E., & Dornelas, M. (2020). Landscape-scale forest loss as a catalyst of population and biodiversity change. Science, 368(6497), 1341-1347. doi:10.1126/science.aba1289

Debat, V., Chazot, N., Jarosson, S., Blandin, P., & Llaurens, V. (2020). What drives the diversification of eyespots in Morpho butterflies? Disentangling developmental and selective constraints from neutral evolution. Frontiers in Ecology and Evolution, 8, 112.
DOI:https://doi.org/10.3389/fevo.2020.00112

Doughty, C. E., Prys-Jones, T. O., Faurby, S., Abraham, A. J., Hepp, C., Leshyk, V., . . . Galetti, M. (2020). Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases. Ecography, 43(8), 1107-1117. doi:https://doi.org/10.1111/ecog.05209

Ducatez, S., Lefebvre, L., Sayol, F., Audet, J.-N., & Sol, D. (2020). Host Cognition and Parasitism in Birds: A Review of the Main Mechanisms. Frontiers in Ecology and Evolution, 8(102). doi:10.3389/fevo.2020.00102

Durkin, L., Jansson, T., Sanchez, M., Khomich, M., Ryberg, M., Kristiansson, E., & Nilsson, R. H. (2020). When mycologists describe new species, not all relevant information is provided (clearly enough). MycoKeys, 72. doi:10.3897/mycokeys.72.56691

Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2020). raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 1-5. doi:10.1111/2041-210X.13512

Eggens, F., Jafari, F., Thollesson, M., Crameri, S., Zarre, S., & Oxelman, B. (2020). Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section. PhytoKeys, 159, 1-34. doi:10.3897/phytokeys.159.51500

Eggens, F., Jafari, F., Zarre, S., & Oxelman, B. (2020). (2755) Proposal to conserve the name Silene linearis Decne. against S. linearis Sweet (Caryophyllaceae). Taxon, 69(4), 825-826.
DOI: 10.1002/tax.12302

Eilertsen, M. H., Dahlgren, T. G., & Rapp, H. T. (2020). A New Species of Osedax (Siboglinidae: Annelida) From Colonization Experiments in the Arctic Deep Sea. Frontiers in Marine Science, 7(443). doi:10.3389/fmars.2020.00443

Entiauspe-Neto, O., Guedes, T., Loebmann, D., & de Lema, T. (2020). Taxonomic Status of Two Simultaneously Described Apostolepis Cope, 1862 Species (Dipsadidae: Elapomorphini) from Caatinga Enclaves Moist Forests, Brazil. Journal of Herpetology, 54, 225. doi:10.1670/19-053

Entiauspe-Neto, O., Koch, C., Guedes, T., & Tiutenko, A. (2020). Revisiting the taxonomic status of Apostolepis sanctaeritae, a forgotten Neotropical dipsadid snake. SALAMANDRA, 56, 14.
ISSN 0036–337

Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae).
DOI: 10.21203/rs.3.rs-48002/v4

Eriksson, J., Bacon, C., Bennett, D., Pfeil, B., Oxelman, B., & Antonelli, A. (2020). Two ancient genome duplication events shape diversity in Hibiscus L. (Malvaceae).
DOI: 10.21203/rs.3.rs-48002/v2

Ernfors, M., Björk, R. G., Nousratpour, A., Rayner, D., Weslien, P., & Klemedtsson, L. (2020). Greenhouse gas dynamics of a well-drained afforested agricultural peatland. Boreal Environment Research, 25, 65-77.
ISSN 1797-2469

Farooq, H., Azevedo, J., Belluardo, F., Nanvonamuquitxo, C., Bennett, D., Moat, J., . . . Antonelli, A. (2020). WEGE: A new metric for ranking locations for biodiversity conservation. Diversity and Distributions, 26(11), 1456-1466. doi:https://doi.org/10.1111/ddi.13148

Farooq, H., Azevedo, J. A. R., Soares, A., Antonelli, A., & Faurby, S. (2020). Mapping Africa’s Biodiversity: More of the Same Is Just Not Good Enough. Systematic Biology. doi:10.1093/sysbio/syaa090

Farooq, H., & Uetz, P. (2020). Identifying Australian snakes by color patterns. VERTEBRATE ZOOLOGY, 70(3), 473-482.
DOI: 10.26049/VZ70-3-2020-15

Faurby, S., Silvestro, D., Werdelin, L., & Antonelli, A. (2020). Brain expansion in early hominins predicts carnivore extinctions in East Africa. Ecology Letters, 23(3), 537-544. doi:https://doi.org/10.1111/ele.13451

García Criado, M., Myers-Smith, I. H., Bjorkman, A. D., Lehmann, C. E. R., & Stevens, N. (2020). Woody plant encroachment intensifies under climate change across tundra and savanna biomes. Global Ecology and Biogeography, 29(5), 925-943. doi:https://doi.org/10.1111/geb.13072

Gomes, D. F., Azevedo, J., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15(12), e0243210. doi:10.1371/journal.pone.0243210

Grace, O., Lovett, J., Gore, C., Moat, J., Ondo, I., Pironon, S., . . . Wilkin, P. (2020). R E V I E W Plant Power: Opportunities and challenges for meeting sustainable energy needs from the plant and fungal kingdoms Societal Impact Statement. Plants People Planet, 2, 446-462. doi:10.1002/ppp3.10147

Guedes, T., Azevedo, J. A., Bacon, C., Provete, D., & Antonelli, A. (2020). Diversity, Endemism, and Evolutionary History of Montane Biotas Outside the Andean Region. In (pp. 299-328).
DOI: 10.1007/978-3-030-31167-4_13

Guedes, T., & Guedes, A. (2020). Notes on court and copula, fertility, nest, eggs and hatchlings of the Caatinga’s black snake Boiruna sertaneja Zaher, 1996 (Serpentes: Dipsadidae) from northeastern Brazil. Anais da Academia Brasileira de Ciências, 92, e20190588. doi:10.1590/0001-3765202020190588

Guedes, T., Queiroz, A., Souza, P., & Hamdan, B. (2020). Updated distribution maps with new records of Trilepida fuliginosa (Passos, Caramaschi & Pinto, 2006) and Drepanoides anomalus (Jan, 1863) (Squamata, Serpentes) in the state of Maranhão, northeastern Brazil. Check List, 16, 423-433. doi:10.15560/16.2.423

Hamdan, B., Guedes, T., Carrasco, P., & Melville, J. (2020). A complex biogeographic history of diversification in Neotropical lancehead pitvipers (Serpentes, Viperidae). Zoologica Scripta, 49, 145-158. doi:10.1111/zsc.12398

Hannus, S., Hirons, Baxter, McAllister, H., Wiström, B., & Sjöman, H. (2020). Intraspecific drought tolerance of Betula pendula genotypes: an evaluation using leaf turgor loss in a botanical collection. Trees, 13. doi:10.1007/s00468-020-02059-7

Helmstetter, A. J., Kamga, S. M., Bethune, K., Lautenschläger, T., Zizka, A., Bacon, C. D., . . . Couvreur, T. L. P. (2020). Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae). Plants, 9(4), 549.
DOI: https://doi.org/10.3390/plants9040549

Hestetun, J. T., Bye-Ingebrigtsen, E., Nilsson, R. H., Glover, A. G., Johansen, P.-O., & Dahlgren, T. G. (2020). Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna metabarcoding. Marine Biodiversity, 50(5), 70. doi:10.1007/s12526-020-01093-5

Hirons, A., Watkins, H., Baxter, T., Miesbauer, J., Male-Muñoz, A., Martin, K., . . . Sjöman, H. (2020). Using botanic gardens and arboreta to help identify urban trees for the future. Plants People Planet, 1-12. doi:10.1002/ppp3.10162

Id, D., Azevedo, J. A., Murta-Fonseca, R., Faurby, S., Antonelli, A., & Passos, P. (2020). Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche. PLOS ONE, 15, 1-45. doi:10.1371/journal.pone.0243210

Kõljalg, U., Nilsson, R. H., Schigel, D., Tedersoo, L., Larsson, K.-H., May, T., . . . Abarenkov, K. (2020). The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa. Microorganisms, 8. doi:10.3390/microorganisms8121910

Korshunova, T., Bakken, T., Grøtan, V. V., Johnson, K. B., Lundin, K., & Martynov, A. (2020). A synoptic review of the family Dendronotidae (Mollusca: Nudibranchia): a multilevel organismal diversity approach. Contributions to Zoology, 90(1), 93-153. doi:https://doi.org/10.1163/18759866-BJA10014

Korshunova, T., Fletcher, K., Picton, B., Lundin, K., Kashio, S., Sanamyan, N., . . . Martynov, A. (2020). The Emperor’s Cadlina, hidden diversity and gill cavity evolution: new insights for the taxonomy and phylogeny of dorid nudibranchs (Mollusca: Gastropoda). Zoological Journal of the Linnean Society, 189(3), 762-827. doi:10.1093/zoolinnean/zlz126

Korshunova, T., Malmberg, K., Prkić, J., Petani, A., Fletcher, K., Lundin, K., & Martynov, A. (2020). Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity. ZooKeys, 917. doi:10.3897/zookeys.917.47444

Korshunova, T. A., Sanamyan, N. P., Sanamyan, K. E., Bakken, T., Lundin, K., Fletcher, K., & Martynov, A. V. (2020). Biodiversity hotspot in cold waters: a review of the genus Cuthonella with descriptions of seven new species (Mollusca, Nudibranchia). Contributions to Zoology, 90(2), 216-283. doi:https://doi.org/10.1163/18759866-BJA10017

Larsson, E., & Bendiksen, K. (2020). Hygrophorus betulae, a new species described from subalpine birch forest in Finland. Karstenia, 58(1), 1-9.
DOI: 10.29203/ka.2020.484

Larsson, K.-H., Larsson, E., Ryvarden, L., & Spirin, V. (2020). Some new combinations of corticioid fungi (Basidiomycota. Agaricomycetes). 40, 113-117.
ISSN 0802-8966

Lembrechts, J. J., Aalto, J., Ashcroft, M. B., De Frenne, P., Kopecký, M., Lenoir, J., . . . Nijs, I. (2020). SoilTemp: A global database of near-surface temperature. Global Change Biology, 26(11), 6616-6629. doi:https://doi.org/10.1111/gcb.15123

Lim, J. Y., Svenning, J.-C., Göldel, B., Faurby, S., & Kissling, W. D. (2020). Frugivore-fruit size relationships between palms and mammals reveal past and future defaunation impacts. Nature Communications, 11(1), 4904. doi:10.1038/s41467-020-18530-5

Ljungstrand, E. & Persson, C. (2020). Dipsacaeae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

López, G. M., Gelfo, J. N., Bauzá, N., Bond, M., & Tejedor, M. F. (2020). Biochron and Diversity of Archaeopithecidae (Mammalia, Notoungulata) and a New Genus and Species from the Eocene of Patagonia, Argentina. Ameghiniana, 57(2), 103-116, 114. Retrieved from https://doi.org/10.5710/AMGH.18.01.2020.3291

Martynov, A., Lundin, K., Picton, B., Fletcher, K., Malmberg, K., & Korshunova, T. (2020). Multiple paedomorphic lineages of soft-substrate burrowing invertebrates: parallels in the origin of Xenocratena and Xenoturbella. PLOS ONE, 15(1), e0227173. doi:10.1371/journal.pone.0227173

Mashburn, B., Perez, A. J., Persson, C., Zapata, N., Cevallos, D., & Muchhala, N. (2020). Burmeistera quimiensis (Lobelioideae, Campanulaceae): A new species from the Cordillera del Cóndor range in southeast Ecuador. Phytotaxa, 433(1), 67-74.
https://doi.org/10.11646/phytotaxa.433.1.7

Melo, W., Vieira, L., Novaes, E., Bacon, C., & Collevatti, R. (2020). Selective Sweeps Lead to Evolutionary Success in an Amazonian Hyperdominant Palm. Frontiers in Genetics, 11. doi:10.3389/fgene.2020.596662

Mohammadi, Z., Aliabadian, M., Ghorbani, F., Moghaddam, F. Y., Lissovsky, A. A., Obst, M., & Olsson, U. (2020). Unidirectional Introgression and Evidence of Hybrid Superiority over Parental Populations in Eastern Iranian Plateau Population of Hares (Mammalia: Lepus Linnaeus, 1758). Journal of Mammalian Evolution, 27(4), 723-743. doi:10.1007/s10914-019-09478-5

Moleón, M., Sánchez-Zapata, J., Donázar, J., Revilla, E., Martín-López, B., Gutiérrez-Cánovas, T., . . . Svenning, J.-C. (2020). Rethinking megafauna. Proceedings of the Royal Society B: Biological Sciences, 287, 20192643. doi:10.1098/rspb.2019.2643

Molia, A., Larsson, E., Jeppson, M., Læssøe, T., & Larsson, K. H. (2020). Elaphomyces section Elaphomyces (Eurotiales, Ascomycota) - taxonomy and phylogeny of North European taxa, with the introduction of three new species. Fungal systematics and evolution, 5, 283-300. doi:10.3114/fuse.2020.05.14

Neves, B., Kessous, I. M., Moura, R. L., Couto, D. R., Zanella, C. M., Antonelli, A., . . . Costa, A. F. (2020). Pollinators drive floral evolution in an Atlantic Forest genus. AoB PLANTS, 12(5). doi:10.1093/aobpla/plaa046

Neves, B., Zanella, C., Kessous, I., Uribbe, F., Salgueiro, F., Bered, F., . . . Costa, A. (2019). Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest. Journal of Biogeography, 47. doi:10.1111/jbi.13746

Nic Lughadha, E., Bachman, S., Leão, T., Forest, F., Halley, J., Moat, J., . . . Walker, B. (2020). Extinction risk and threats to plants and fungi. Plants People Planet, 2, 389-408. doi:10.1002/ppp3.10146

Olofsson, M., Hagan, J. G., Karlson, B., & Gamfeldt, L. (2020). Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient. Scientific Reports, 10(1), 17666. doi:10.1038/s41598-020-74428-8

Paton, A., Antonelli, A., Carine, M., Forzza, R., Davies, N., Demissew, S., . . . Dickie, J. (2020). REVIEW Plant and fungal collections: Current status, future perspectives. Plants People Planet. doi:10.1002/ppp3.10141

Pearce, T., Antonelli, A., Brearley, F., Couch, C., Forzza, R., Gonçalves, S., . . . Breman, E. (2020). International collaboration between collections‐based institutes for halting biodiversity loss and unlocking the useful properties of plants and fungi. Plants, People, Planet, 2, 515-534. doi:10.1002/ppp3.10149

Pedersen, R. Ø., Faurby, S., & Svenning, J.-C. (2020). Extinctions have strongly reduced the mammalian consumption of primary productivity.
DOI: 10.1101/2020.10.15.341297

Peixoto, M., Guedes, T., Silva, E., Feio, R., & Romano, P. (2020). Biogeographic tools help to assess the effectiveness of protected areas for the conservation of anurans in the Mantiqueira mountain range, Southeastern Brazil. Journal for Nature Conservation, 54, 125799. doi:10.1016/j.jnc.2020.125799

Pérez-Escobar, O., Bellot, S., Gros-Balthazard, M., Flowers, J., Nesbitt, M., Ryan, P., . . . Baker, W. (2020). Archaeogenomics of a ~2,100-year-old Egyptian leaf provides a new timestamp on date palm domestication.
DOI: 10.1101/2020.11.26.400408

Pérez-Escobar, O., Richardson, J.-E., Howes, M.-J., Lucas, E., Róman, N., Collemare, J., . . . Antonelli, A. (2020). Untapped resources for medical research. Science, 369, 781-782. doi:10.1126/science.abc8085

Perrigo, A. L., Vadell, E. M., Cavender, J. C., Landolt, J. C., Liu, P., & Stephenson, S. L. (2020). Additional new species suggest high dictyostelid diversity on Madagascar. Mycologia, 112(5), 1026-1042. doi:10.1080/00275514.2020.1802641

Persson, C. (2020). Caprifoliaceae in Persson, C. et al. (eds). Flora of Ecuador no. 97.
No DOI, book chapter?

Pimiento, C., Bacon, C. D., Silvestro, D., Hendy, A., Jaramillo, C., Zizka, A., . . . Antonelli, A. (2020). Selective extinction against redundant species buffers functional diversity. Proceedings of the Royal Society B: Biological Sciences, 287(1931), 20201162. doi:doi:10.1098/rspb.2020.1162

Pimiento, C., Leprieur, F., Silvestro, D., Lefcheck, J. S., Albouy, C., Rasher, D. B., . . . Griffin, J. N. (2020). Functional diversity of marine megafauna in the Anthropocene. Science Advances, 6(16), eaay7650. doi:10.1126/sciadv.aay7650

Pironon, S., Borrell, J., Ondo, I., Douglas, R., Phillips, C., Khoury, C. K., . . . Antonelli, A. (2020). Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity. Plants, 9, 1128. doi:10.3390/plants9091128

Ritter, C., Ribas, C., Menger, J., Borges, S., Bacon, C., Metzger, J., . . . Cornelius, C. (2020). Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird.
doi: https://doi.org/10.1101/2020.12.25.424395 

Ritter, C. D., Dunthorn, M., Anslan, S., de Lima, V. X., Tedersoo, L., Nilsson, R. H., & Antonelli, A. (2020). Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecology and Evolution, 10(14), 7509-7524. doi:https://doi.org/10.1002/ece3.6477

Robert, S. C. C., Felix, E., & Amanda, E. B. (2020). Ecological distinctiveness of birds and mammals at the global scale. Global Ecology and Conservation, 22, e00970. doi:https://doi.org/10.1016/j.gecco.2020.e00970

Rojas-Morales, J. A., Ramírez-Chaves, H. E., & Guedes, T. B. (2020). New record for Colombia, updated distribution map, and comments on the defensive behavior of Thamnodyastes dixoni Bailey & Thomas, 2007 (Serpentes, Dipsadidae, Xenodontinae). Check List, 16, 169.
DOI: 10.15560/16.1.169

Roncal, J., Nieto-Blázquez, M. E., Cardona, A., & Bacon, C. (2020). Historical Biogeography of Caribbean Plants Revises Regional Paleogeography. In (pp. 521-546).
DOI: 10.1007/978-3-030-31167-4_20

Sandom, C., Middleton, O., Lundgren, E., Rowan, J., Schowanek, S., Svenning, J.-C., & Faurby, S. (2020). Trophic rewilding presents regionally specific opportunities for mitigating climate change. Philosophical Transactions of The Royal Society B Biological Sciences, 375. doi:10.1098/rstb.2019.0125

Sayol, F., Collado, M. Á., Garcia-Porta, J., Seid, M. A., Gibbs, J., Agorreta, A., . . . Bartomeus, I. (2020). Feeding specialization and longer generation time are associated with relatively larger brains in bees. Proceedings of the Royal Society B: Biological Sciences, 287(1935), 20200762. doi:doi:10.1098/rspb.2020.0762

Sayol, F., Sol, D., & Pigot, A. L. (2020). Brain Size and Life History Interact to Predict Urban Tolerance in Birds. Frontiers in Ecology and Evolution, 8(58). doi:10.3389/fevo.2020.00058

Sayol, F., Steinbauer, M., Blackburn, T., Antonelli, A., & Faurby, S. (2020). Anthropogenic extinctions conceal widespread evolution of flightlessness in birds. Science Advances, 6, eabb6095. doi:10.1126/sciadv.abb6095

Seiffert, E. R., Tejedor, M. F., Fleagle, J. G., Novo, N. M., Cornejo, F. M., Bond, M., . . . Campbell, K. E. (2020). A parapithecid stem anthropoid of African origin in the Paleogene of South America. Science, 368(6487), 194-197. doi:10.1126/science.aba1135

Silva, C., Freitas, C., Lemes, L., Paterno, G., Dias, P., Bacon, C., & Collevatti, R. (2020). Higher evolutionary rates in life-history traits in insular than in mainland palms. Scientific Reports, 10. doi:10.1038/s41598-020-78267-5

Silva, W., Nyqvist, A., Jonsson, P., & Harding, K. (2020). Ecological success of sexual and asexual reproductive strategies invading an environmentally unstable habitat.

Smiljanić, J., Edler, D., & Rosvall, M. (2020). Mapping flows on sparse networks with missing links. Physical Review E, 102(1), 012302. doi:10.1103/PhysRevE.102.012302

Sulistyo, B. P., Larsson, K.-H., Haelewaters, D., & Ryberg, M. (2020). Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov. Fungal Biology. doi:10.1016/j.funbio.2020.11.007

Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., . . . de Vries, F. T. (2020). Global plant trait relationships extend to the climatic extremes of the tundra biome. Nature Communications, 11(1), 1351. doi:10.1038/s41467-020-15014-4

Ulian, T., Diazgranados, M., Pironon, S., Padulosi, S., Liu, U., Davies, L., . . . Mattana, E. (2020). Unlocking plant resources to support food security and promote sustainable agriculture. Plants People Planet, 2020, 421-445. doi:10.1002/ppp3.10145

Urban, O., & Per, A. (2020). A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae). Molecular Phylogenetics and Evolution, 146, 106757. doi:https://doi.org/10.1016/j.ympev.2020.106757

Uribbe, F., Neves, B., Jacques, S., & Costa, A. (2020). Morphological Variation in the Vriesea procera Complex (Bromeliaceae, Tillandsioideae) in the Brazilian Atlantic Rainforest, with Recognition of New Taxa. Systematic Botany, 45. doi:10.1600/036364420X15801369352306

Vauras, J., & Larsson, E. (2020). First records of Inocybe melleiconica and I. pararubens for Northern Europe with a new variety from the alpine zone of the Scandinavian mountains. Karstenia, 58. doi:10.29203/ka.2020.487

Vilella, M., Ferrandiz-Rovira, M., & Sayol, F. (2020). Coexistence of predators in time: Effects of season and prey availability on species activity within a Mediterranean carnivore guild. Ecology and Evolution, 10(20), 11408-11422. doi:https://doi.org/10.1002/ece3.6778

Voitk, A., Saar, I., Lodge, D. J., Boertmann, D., Berch, S. M., & Larsson, E. (2020). New species and reports of Cuphophyllus from northern North America compared with related Eurasian species. Mycologia, 112(2), 438-452. doi:10.1080/00275514.2019.1703476

von Proschwitz, T. (2020). Rapid invasion of the slug <i>Krynickillus melanocephalus</i> Kaleniczenko, 1851 in Sweden and some notes on the biology and anthropochorous spread of the species in Europe (Gastropoda: Eupulmonata: Agriolimacidae). Folia Malacologica, 28(3), 227-234. doi:10.12657/folmal.028.018

von Proschwitz, T., & Wengström, N. (2020). Zoogeography, ecology, and conservation status of the large freshwater mussels in Sweden. Hydrobiologia. doi:10.1007/s10750-020-04351-6

Wiemers, M., Chazot, N., Wheat, C. W., Schweiger, O., & Wahlberg, N. (2020). A complete time-calibrated multi-gene phylogeny of the European butterflies. ZooKeys, 938. doi:10.3897/zookeys.938.50878

Williams, C., Walsh, A., Vaglica, V., Sirakaya, A., Silva, M., Dalle, G., . . . Cowell, C. (2020). Conservation Policy: Helping or hindering science to unlock properties of plants and fungi. Plants People Planet, 2, 535-545. doi:10.1002/ppp3.10139

Wurzbacher, C., Kreiling, A.-K., Svantesson, S., Van den Wyngaert, S., Larsson, E., Heeger, F., . . . Pálsson, S. (2020). Fungal communities in groundwater springs along the volcanic zone of Iceland. Inland Waters, 10(3), 418-427. doi:10.1080/20442041.2019.1689065

Zanne, A. E., Abarenkov, K., Afkhami, M. E., Aguilar-Trigueros, C. A., Bates, S., Bhatnagar, J. M., . . . Treseder, K. K. (2020). Fungal functional ecology: bringing a trait-based approach to plant-associated fungi. Biological Reviews, 95(2), 409-433. doi:https://doi.org/10.1111/brv.12570

Zizka, A., Antunes Carvalho, F., Calvente, A., Rocio Baez-Lizarazo, M., Cabral, A., Coelho, J. F. R., . . . Antonelli, A. (2020). No one-size-fits-all solution to clean GBIF. PeerJ, 8, e9916. doi:10.7717/peerj.9916

Zizka, A., Rydén, O., Edler, D., Klein, J., Aronsson, H., Perrigo, A., . . . Antonelli, A. (2020). Exploring the Impact of Political Regimes on Biodiversity. SSRN Electronic Journal. doi:10.2139/ssrn.3561430

Zrimec, J., Börlin, C. S., Buric, F., Muhammad, A. S., Chen, R., Siewers, V., . . . Zelezniak, A. (2020). Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. Nature Communications, 11(1), 6141. doi:10.1038/s41467-020-19921-4

2019

Amorim, B. S., Vasconcelos, T. N. C., Souza, G., Alves, M., Antonelli, A., & Lucas, E. (2019). Advanced understanding of phylogenetic relationships, morphological evolution and biogeographic history of the mega-diverse plant genus Myrcia and its relatives (Myrtaceae: Myrteae). Molecular Phylogenetics and Evolution, 138, 65-88. doi:https://doi.org/10.1016/j.ympev.2019.05.014

Andermann, T., Faurby, S., Cooke, R., Silvestro, D., & Antonelli, A. (2019). iucn_sim - Improved predictions of future extinctions using IUCN status assessments. bioRxiv, 2019.2012.2016.878249. doi:10.1101/2019.12.16.878249

Andermann, T., Torres Jimenez, M. F., Matos-Maraví, P., Batista, R., Blanco-Pastor, J. L., Gustafsson, A. L. S., . . . Antonelli, A. (2019). A guide to carrying out a phylogenomic target sequence capture project. PeerJ Preprints, 7, e27968v27961. doi:10.7287/peerj.preprints.27968v1

Antonelli, A. (2019). Tree plantations: we must get them right. Nature, 572(7768), 178.

Antonelli, A., Smith, R. J., & Simmonds, M. S. J. (2019). Unlocking the properties of plants and fungi for sustainable development. Nature Plants, 5(11), 1100-1102. doi:10.1038/s41477-019-0554-1

Bakker, F. T., Antonelli, A., Clarke, J., Cook, J. A., Edwards, S., Ericson, P. G., . . . Gillespie, R. (2019). The Global Museum: natural history collections and the future of evolutionary biology and public education. PeerJ Preprints, 7.

Barrett, C. F., McKain, M. R., Sinn, B. T., Ge, X.-J., Zhang, Y., Antonelli, A., & Bacon, C. D. (2019). Ancient Polyploidy and Genome Evolution in Palms. Genome Biology and Evolution, 11(5), 1501-1511. doi:10.1093/gbe/evz092

Barrett, C. F., Sinn, B. T., King, L. T., Medina, J. C., Bacon, C. D., Lahmeyer, S. C., & Hodel, D. R. (2019). Phylogenomics, biogeography and evolution in the American genus Brahea (Arecaceae). Botanical Journal of the Linnean Society, 190(3), 242-259. doi:10.1093/botlinnean/boz015

Bennett, D. J., Sutton, M. D., & Turvey, S. T. (2019). How the past impacts the future: modelling the performance of evolutionarily distinct mammals through time. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1788), 20190210. doi:doi:10.1098/rstb.2019.0210

Bernal, R., Bacon, C. D., Balslev, H., Hoorn, C., Bourlat, S. J., Tuomisto, H., . . . Antonelli, A. (2019). Could coastal plants in western Amazonia be relicts of past marine incursions? Journal of Biogeography, 46(8), 1749-1759. doi:10.1111/jbi.13560

Bernardo-Madrid, R., Calatayud, J., González-Suárez, M., Rosvall, M., Lucas, P. M., Rueda, M., . . . Revilla, E. (2019). Human activity is altering the world’s zoogeographical regions. Ecology Letters, 22(8), 1297-1305. doi:10.1111/ele.13321

Bogarín, D., Pérez-Escobar, O. A., Karremans, A. P., Fernández, M., Kruizinga, J., Pupulin, F., . . . Gravendeel, B. (2019). Phylogenetic comparative methods improve the selection of characters for generic delimitations in a hyperdiverse Neotropical orchid clade. Scientific Reports, 9(1), 15098. doi:10.1038/s41598-019-51360-0

Bravo, G. A., Antonelli, A., Bacon, C. D., Bartoszek, K., Blom, M. P. K., Huynh, S., . . . Edwards, S. V. (2019). Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. PeerJ, 7, e6399. doi:10.7717/peerj.6399

Buckland-Nicks, J., Lundin, K., & Wallberg, A. (2019). The sperm of Xenacoelomorpha revisited: implications for the evolution of early bilaterians. Zoomorphology, 138(1), 13-27. doi:10.1007/s00435-018-0425-8

Cássia-Silva, C., Freitas, C. G., Alves, D. M. C. C., Bacon, C. D., & Collevatti, R. G. (2019). Niche conservatism drives a global discrepancy in palm species richness between seasonally dry and moist habitats. Global Ecology and Biogeography, 28(6), 814-825. doi:10.1111/geb.12895

Chazot, N., Wahlberg, N., Freitas, A. V. L., Mitter, C., Labandeira, C., Sohn, J.-C., . . . Heikkilä, M. (2019). Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited. Systematic Biology, 68(5), 797-813. doi:10.1093/sysbio/syz002

Chazot, N., Willmott, K. R., Lamas, G., Freitas, A. V. L., Piron-Prunier, F., Arias, C. F., . . . Elias, M. (2019). Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation. Global Ecology and Biogeography, 28(8), 1118-1132. doi:10.1111/geb.12919

Chomicki, G., Weber, M., Antonelli, A., Bascompte, J., & Kiers, E. T. (2019). The Impact of Mutualisms on Species Richness. Trends in Ecology & Evolution, 34(8), 698-711. doi:https://doi.org/10.1016/j.tree.2019.03.003

Copas, K., Schigel, D., Jeppesen, T. S., Kõljalg, U., & Nilsson, R. H. (2019). Linnaeus meets eDNA: crosslinking open data between metagenomics infrastructures and GBIF. org to address spatial and taxonomic bias and advance understanding of biodiversity. Paper presented at the Geophysical Research Abstracts.

Duchen, P., Alfaro, M. L., Rolland, J., Salamin, N., & Silvestro, D. (2019). On the effect of asymmetrical trait inheritance on models of trait evolution. bioRxiv, 768820. doi:10.1101/768820

Dudas, G., & Bedford, T. (2019). The ability of single genes vs full genomes to resolve time and space in outbreak analysis. BMC Evolutionary Biology, 19(1), 232. doi:10.1186/s12862-019-1567-0

Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2019). raxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML. bioRxiv, 800912. doi:10.1101/800912

Eriksson, J. S. (2019). Polyploid Phylogenetics in Plants: Insights on non-model organisms in Fabaceae and Malvaceae.

Faurby, S., Werdelin, L., & Antonelli, A. (2019). Dispersal ability predicts evolutionary success among mammalian carnivores. bioRxiv, 755207. doi:10.1101/755207

Fernández-Martínez, M., Berloso, F., Corbera, J., Garcia-Porta, J., Sayol, F., Preece, C., & Sabater, F. (2019). Towards a moss sclerophylly continuum: Evolutionary history, water chemistry and climate control traits of hygrophytic mosses. Functional Ecology, 33(12), 2273-2289. doi:10.1111/1365-2435.13443

Fernández-Martínez, M., Pearse, I., Sardans, J., Sayol, F., Koenig, W. D., LaMontagne, J. M., . . . Janssens, I. A. (2019). Nutrient scarcity as a selective pressure for mast seeding. Nature Plants, 5(12), 1222-1228. doi:10.1038/s41477-019-0549-y

Ferrante, M. I., Entrambasaguas, L., Johansson, M., Töpel, M., Kremp, A., Montresor, M., & Godhe, A. (2019). Exploring Molecular Signs of Sex in the Marine Diatom Skeletonema marinoi. Genes, 10(7), 494.

Freitas, C. G., Bacon, C. D., Souza-Neto, A. C., & Collevatti, R. G. (2019). Adjacency and Area Explain Species Bioregional Shifts in Neotropical Palms. Frontiers in Plant Science, 10(55). doi:10.3389/fpls.2019.00055

Govindarajan, A. F., Källström, B., Selander, E., Östman, C., & Dahlgren, T. G. (2019). The highly toxic and cryptogenic clinging jellyfish Gonionemus sp. (Hydrozoa, Limnomedusae) on the Swedish west coast. PeerJ, 7, e6883. doi:10.7717/peerj.6883

Harfoot, M. B. J., Abraham, A., Tittensor, D. P., Costa, G. C., Faurby, S., Feldman, A., . . . Purves, D. (2019). Mechanistic macroecology: exploring the drivers of latitudinal variation in terrestrial body size in a General Ecosystem Model. bioRxiv, 775957. doi:10.1101/775957

Harmon, L. J., Andreazzi, C. S., Débarre, F., Drury, J., Goldberg, E. E., Martins, A. B., . . . Matthews, B. (2019). Detecting the macroevolutionary signal of species interactions. Journal of Evolutionary Biology, 32(8), 769-782. doi:10.1111/jeb.13477

Heiden, G., Antonelli, A., & Pirani, J. R. (2019). A novel phylogenetic infrageneric classification of Baccharis (Asteraceae: Astereae), a highly diversified American genus. TAXON, 68(5), 1048-1081. doi:10.1002/tax.12128

Ihlow, F., Farooq, H., Qvozdik, V., Hofmeyr, M., Conradie, W., Harvey, J., . . . Fritz, U. (2019). Geographic range extension of Speke's Hinge-back Tortoise Kinixys spekii Gray, 1863. Retrieved from http://hdl.handle.net/10141/622596

Jansen, H. M., Hansen, P. K., Brennan, N., Dahlgren, T. G., Fang, J., Nederlof, M. A. J., . . . Strand, Ø. (2019). Enhancing opportunistic polychaete communities under fish farms: an alternative concept for integrated aquaculture. Aquaculture Environment Interactions, 11, 331-336. Retrieved from https://www.int-res.com/abstracts/aei/v11/p331-336/

Johansson, O. N., Pinder, M. I. M., Ohlsson, F., Egardt, J., Töpel, M., & Clarke, A. K. (2019). Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi. Frontiers in Microbiology, 10(1828). doi:10.3389/fmicb.2019.01828

Johansson, O. N., Töpel, M., Egardt, J., Pinder, M. I. M., Andersson, M. X., Godhe, A., & Clarke, A. K. (2019). Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation. Scientific Reports, 9(1), 15143. doi:10.1038/s41598-019-51683-y

Johansson, O. N., Töpel, M., Pinder, M. I. M., Kourtchenko, O., Blomberg, A., Godhe, A., & Clarke, A. K. (2019). Skeletonema marinoi as a new genetic model for marine chain-forming diatoms. Scientific Reports, 9(1), 5391. doi:10.1038/s41598-019-41085-5

Kehoe, L., Reis, T., Virah-Sawmy, M., Balmford, A., Kuemmerle, T., Knohl, A., . . . Massa, B. (2019). Make EU trade with Brazil sustainable. Science, 364(6438), 341.

Klingberg, J., Karlsson, P. E., Andersson, C., Engardt, M., Karlsson, G. P., & Pleijel, H. (2019). Observed annual surface ozone maxima and minima in northern and central Europe from 1990–2015—latitude dependence and temporal trends. BOREAL ENVIRONMENT RESEARCH, 24, 201-214.

Kõljalg, U., Abarenkov, K., Nilsson, R. H., Larsson, K.-H., & Taylor, A. F. (2019). The UNITE Database for Molecular Identification and for Communicating Fungal Species. Biodiversity Information Science and Standards.

Korshunova, T., Mehrotra, R., Arnold, S., Lundin, K., Picton, B., & Martynov, A. (2019). The formerly enigmatic Unidentiidae in the limelight again: a new species of the genus Unidentia from Thailand (Gastropoda: Nudibranchia). ZooTaxa, 4551(5), 556-570.

Korshunova, T., Picton, B., Furfaro, G., Mariottini, P., Pontes, M., Prkić, J., . . . Martynov, A. (2019). Multilevel fine-scale diversity challenges the ‘cryptic species’ concept. Scientific Reports, 9(1), 6732. doi:10.1038/s41598-019-42297-5

Kramshøj, M., Albers, C. N., Svendsen, S. H., Björkman, M. P., Lindwall, F., Björk, R. G., & Rinnan, R. (2019). Volatile emissions from thawing permafrost soils are influenced by meltwater drainage conditions. Global Change Biology, 25(5), 1704-1716. doi:10.1111/gcb.14582

Larsson, K.-H., Svantesson, S., Miscevic, D., Kõljalg, U., & Larsson, E. (2019). Reassessment of the generic limits for Hydnellum and Sarcodon (Thelephorales, Basidiomycota). MycoKeys, 54. doi:10.3897/mycokeys.54.35386

Lentendu, G., Buosi, P. R. B., Cabral, A. F., Trevizan Segóvia, B., Ramos Meira, B., Lansac-Tôha, F. M., . . . Dunthorn, M. (2019). Protist Biodiversity and Biogeography in Lakes From Four Brazilian River–Floodplain Systems. Journal of Eukaryotic Microbiology, 66(4), 592-599. doi:10.1111/jeu.12703

Loiseau, O., Olivares, I., Paris, M., de La Harpe, M., Weigand, A., Koubínová, D., . . . Salamin, N. (2019). Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae. Frontiers in Plant Science, 10(864). doi:10.3389/fpls.2019.00864

Loiseau, O., Weigand, A., Noben, S., Rolland, J., Silvestro, D., Kessler, M., . . . Salamin, N. (2019). Slowly but surely: gradual diversification and phenotypic evolution in the hyper-diverse tree fern family Cyatheaceae. Annals of Botany, 125(1), 93-103. doi:10.1093/aob/mcz145

Martynov, A., Mehrotra, R., Chavanich, S., Nakano, R., Kashio, S., Lundin, K., . . . Korshunova, T. (2019). The extraordinary genus Myja is not a tergipedid, but related to the Facelinidae s. str. with the addition of two new species from Japan (Mollusca, Nudibranchia). ZooKeys(818), 89-116. doi:10.3897/zookeys.818.30477

Matos-Maraví, P., Duarte Ritter, C., Barnes, C. J., Nielsen, M., Olsson, U., Wahlberg, N., . . . Antonelli, A. (2019). Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies. PeerJ, 7, e6727. doi:10.7717/peerj.6727

Matos-Maraví, P., Wahlberg, N., Antonelli, A., & Penz, C. M. (2019). Species limits in butterflies (Lepidoptera: Nymphalidae): reconciling classical taxonomy with the multispecies coalescent. Systematic Entomology, 44(4), 745-756. doi:10.1111/syen.12352

Matos-Maraví, P., Wahlberg, N., Freitas, A. V. L., DeVries, P. J., Antonelli, A., & Penz, C. M. (2019). Mesoamerica is a cradle and the Brazilian Atlantic Forest is a museum of Neotropical butterfly diversity (Lepidoptera: Nymphalidae: Brassolini). bioRxiv, 762393. doi:10.1101/762393

Meyer, X., Dib, L., Silvestro, D., & Salamin, N. (2019). Simultaneous Bayesian inference of phylogeny and molecular coevolution. Proceedings of the National Academy of Sciences, 116(11), 5027-5036. doi:10.1073/pnas.1813836116

Mohammadi, Z., Aliabadian, M., Ghorbani, F., Moghaddam, F. Y., Lissovsky, A. A., Obst, M., & Olsson, U. (2019). Unidirectional Introgression and Evidence of Hybrid Superiority over Parental Populations in Eastern Iranian Plateau Population of Hares (Mammalia: Lepus Linnaeus, 1758). Journal of Mammalian Evolution. doi:10.1007/s10914-019-09478-5

Morais, E. B., Schönenberger, J., Conti, E., Antonelli, A., & Szövényi, P. (2019). Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae. Applications in Plant Sciences, 7(9), e11290. doi:10.1002/aps3.11290

Müller, N. F., Dudas, G., & Stadler, T. (2019). Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations. Virus Evolution, 5(2). doi:10.1093/ve/vez030

Nederlof, M. A. J., Jansen, H. M., Dahlgren, T. G., Fang, J., Meier, S., Strand, Ã., . . . Smaal, A. C. (2019). Application of polychaetes in (de)coupled integrated aquaculture: production of a high-quality marine resource. Aquaculture Environment Interactions, 11, 221-237. Retrieved from https://www.int-res.com/abstracts/aei/v11/p221-237/

Nilsson, R. H., Anslan, S., Bahram, M., Wurzbacher, C., Baldrian, P., & Tedersoo, L. (2019). Mycobiome diversity: high-throughput sequencing and identification of fungi. Nature Reviews Microbiology, 17(2), 95-109. doi:10.1038/s41579-018-0116-y

Nyman, T., Onstein, R. E., Silvestro, D., Wutke, S., Taeger, A., Wahlberg, N., . . . Malm, T. (2019). The early wasp plucks the flower: disparate extant diversity of sawfly superfamilies (Hymenoptera: ‘Symphyta’) may reflect asynchronous switching to angiosperm hosts. Biological Journal of the Linnean Society, 128(1), 1-19. doi:10.1093/biolinnean/blz071

Passos, P., Azevedo, J. A. R., Nogueira, C. C., Fernandes, R., & Sawaya, R. J. (2019). An Integrated Approach to Delimit Species in the Puzzling Atractus emmeli Complex (Serpentes: Dipsadidae). Herpetological Monographs, 33(1), 1-25. doi:10.1655/herpmonographs-d-18-00007.1

Pérez-Escobar, O. A., Lucas, E., Jaramillo, C., Monro, A., Morris, S. K., Bogarín, D., . . . Antonelli, A. (2019). The Origin and Diversification of the Hyperdiverse Flora in the Chocó Biogeographic Region. Frontiers in Plant Science, 10(1328). doi:10.3389/fpls.2019.01328

Pinder, M. I., Johansson, O. N., Almstedt, A., Kourtchenko, O., Clarke, A. K., Godhe, A., & Töpel, M. (2019). Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema marinoi. Journal of Genomics, 7, 46.

Pinder, M. I. M., Johansson, O. N., Almstedt, A., Kourtchenko, O., Clarke, A. K., Godhe, A., & Töpel, M. (2019). Genome Sequence of <i>Kordia</i> sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom <i>Skeletonema marinoi</i>. Journal of Genomics, 7, 46-49. doi:10.7150/jgen.35061

Rahbek, C., Borregaard, M. K., Antonelli, A., Colwell, R. K., Holt, B. G., Nogues-Bravo, D., . . . Fjeldså, J. (2019). Building mountain biodiversity: Geological and evolutionary processes. Science, 365(6458), 1114-1119. doi:10.1126/science.aax0151

Retter, A., Nilsson, R. H., & Bourlat, S. J. (2019). Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding. Biodiversity Data Journal, 7.

Ritter, C. D., Faurby, S., Bennett, D. J., Naka, L. N., ter Steege, H., Zizka, A., . . . Antonelli, A. (2019). The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia. Scientific Reports, 9(1), 19205. doi:10.1038/s41598-019-55490-3

Ritter, C. D., Häggqvist, S., Karlsson, D., Sääksjärvi, I. E., Muasya, A. M., Nilsson, R. H., & Antonelli, A. (2019). Biodiversity assessments in the 21st century: the potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding. Genome, 62(3), 147-159. doi:10.1139/gen-2018-0096

Ritter, C. D., Zizka, A., Barnes, C., Nilsson, R. H., Roger, F., & Antonelli, A. (2019). Locality or habitat? Exploring predictors of biodiversity in Amazonia. Ecography, 42(2), 321-333. doi:10.1111/ecog.03833

Sahlin, E., Johansson, B., Karlsson, P.-O., Loberg, J., Niklasson, M., & Grahn, P. (2019). Improved Wellbeing for Both Caretakers and Users from A Zoo-Related Nature Based Intervention—A Study at Nordens Ark Zoo, Sweden. International Journal of Environmental Research and Public Health, 16, 4929. doi:10.3390/ijerph16244929

Sayol, F., Lapiedra, O., Ducatez, S., & Sol, D. (2019). Larger brains spur species diversification in birds. Evolution, 73(10), 2085-2093. doi:10.1111/evo.13811

Silvestro, D., Salamin, N., Antonelli, A., & Meyer, X. (2019). Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework. Paleobiology, 45(4), 546-570. doi:10.1017/pab.2019.23

Sjöman, H., Bellan, P., Hannus, S., Barblishvili, T., Darchidze, T., & Sikharulidze, S. (2019). Hunting for a Larger Diversity of Urban Trees in Western Europe—A Case Study from the Southern Caucasus. Arboriculture & Urban Forestry, 45, 221-235.

Sjöman, H., & Östberg, J. (2019). Vulnerability of ten major Nordic cities to potential tree losses caused by longhorned beetles. Urban Ecosystems, 22(2), 385-395. doi:10.1007/s11252-019-0824-8

Sjöman, H., & Östberg, J. (2019). Vulnerability of ten major Nordic cities to potential tree losses caused by longhorned beetles. Urban Ecosystems, 22(2), 385-395. doi:10.1007/s11252-019-0824-8

Smiljanić, J., Edler, D., & Rosvall, M. (2019). Mapping flows on sparse networks with missing links. arXiv preprint arXiv:1912.05377.

Stronen, A. V., Iacolina, L., Pertoldi, C., Kusza, S., Hulva, P., Dykyy, I., . . . Faurby, S. (2019). The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources, 11(4), 499-503. doi:10.1007/s12686-018-1036-x

Sundqvist, M. K., Moen, J., Björk, R. G., Vowles, T., Kytöviita, M.-M., Parsons, M. A., & Olofsson, J. (2019). Experimental evidence of the long-term effects of reindeer on Arctic vegetation greenness and species richness at a larger landscape scale. Journal of Ecology, 107(6), 2724-2736. doi:10.1111/1365-2745.13201

Svantesson, S., Larsson, K.-H., Kõljalg, U., May, T. W., Cangren, P., Nilsson, R. H., & Larsson, E. (2019). Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys, 50. doi:10.3897/mycokeys.50.32432

ter Steege, H., Mota de Oliveira, S., Pitman, N. C. A., Sabatier, D., Antonelli, A., Guevara Andino, J. E., . . . Salomão, R. P. (2019). Towards a dynamic list of Amazonian tree species. Scientific Reports, 9(1), 3501. doi:10.1038/s41598-019-40101-y

Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., . . . van Bodegom, P. M. (2019). Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome. Global Ecology and Biogeography, 28(2), 78-95. doi:10.1111/geb.12783

Töpel, M., Pinder, M. I., Johansson, O. N., Kourtchenko, O., Clarke, A. K., & Godhe, A. (2019). Complete genome sequence of novel Sulfitobacter pseudonitzschiae Strain SMR1, isolated from a culture of the marine diatom Skeletonema marinoi. Journal of Genomics, 7, 7.

Töpel, M., Pinder, M. I., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom Host. Journal of Genomics, 7, 60.

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Clarke, A. K., & Godhe, A. (2019). Complete Genome Sequence of Novel <i>Sulfitobacter pseudonitzschiae</i> Strain SMR1, Isolated from a Culture of the Marine Diatom <i>Skeletonema marinoi</i>. Journal of Genomics, 7, 7-10. doi:10.7150/jgen.30559

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Complete Genome Sequence of the Diatom-Associated Bacterium <em>Sphingorhabdus</em> sp. Strain SMR4y. Microbiology Resource Announcements, 8(29), e00482-00419. doi:10.1128/mra.00482-19

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Genome Sequence of <em>Arenibacter algicola</em> Strain SMS7, Found in Association with the Marine Diatom <em>Skeletonema marinoi</em>. Microbiology Resource Announcements, 8(2), e01461-01418. doi:10.1128/mra.01461-18

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2019). Whole Genome Sequence of <i>Marinobacter salarius</i> Strain SMR5, Shown to Promote Growth in its Diatom Host. Journal of Genomics, 7, 60-63. doi:10.7150/jgen.39039

Vowles, T., & Björk, R. G. (2019). Implications of evergreen shrub expansion in the Arctic. Journal of Ecology, 107(2), 650-655. doi:10.1111/1365-2745.13081

Vrasdonk, E., Palme, U., & Lennartsson, T. (2019). Reference situations for biodiversity in life cycle assessments: conceptual bridging between LCA and conservation biology. The International Journal of Life Cycle Assessment, 24(9), 1631-1642. doi:10.1007/s11367-019-01594-x

Wasalathanthri, N. D., Zaidi, S., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S., . . . Allareddy, V. (2019). Challenging transitions. Science (New York, NY), 363(6422), 24.

Wasalathanthri, N. D., Zaidi, S. S.-e.-A., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S. L., . . . Agarwal, D. (2019). Challenging transitions. Science, 363(6422), 24-26. doi:10.1126/science.aaw2641

Wiemers, M., Chazot, N., Wheat, C. W., Schweiger, O., & Wahlberg, N. (2019). A complete time-calibrated multi-gene phylogeny of the European butterflies. bioRxiv, 844175. doi:10.1101/844175

Wiklund, H., Neal, L., Glover, A. G., Drennan, R., Rabone, M., & Dahlgren, T. G. (2019). Abyssal fauna of polymetallic nodule exploration areas, eastern Clarion-Clipperton Zone, central Pacific Ocean: Annelida: Capitellidae, Opheliidae, Scalibregmatidae, and Travisiidae. ZooKeys, 883. doi:10.3897/zookeys.883.36193

Wurzbacher, C., Larsson, E., Bengtsson-Palme, J., Van den Wyngaert, S., Svantesson, S., Kristiansson, E., . . . Nilsson, R. H. (2019). Introducing ribosomal tandem repeat barcoding for fungi. Molecular Ecology Resources, 19(1), 118-127. doi:10.1111/1755-0998.12944

Zizka, A. (2019). Big data suggest migration and bioregion connectivity as crucial for the evolution of Neotropical biodiversity. Frontiers of Biogeography, 11(2).

Zizka, A., Silvestro, D., Andermann, T., Azevedo, J., Duarte Ritter, C., Edler, D., . . . Antonelli, A. (2019). CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases. Methods in Ecology and Evolution, 10(5), 744-751. doi:10.1111/2041-210x.13152

Zrimec, J., Buric, F., Muhammad, A. S., Chen, R., Verendel, V., Töpel, M., & Zelezniak, A. (2019). Gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. bioRxiv, 792531. doi:10.1101/792531

Zurita-Altamirano, D., Buffetaut, E., Forasiepi, A. M., Kramarz, A., Carrillo, J. D., Aguirre-Fernández, G., . . . Sánchez-Villagra, M. R. (2019). The Allemann collection from the Santa Cruz Formation (late early Miocene), Argentina, in Zurich, Switzerland. Swiss Journal of Palaeontology, 138(2), 259-275. doi:10.1007/s13358-019-00185-5

2018

Abarenkov, K., Somervuo, P., Nilsson, R. H., Kirk, P. M., Huotari, T., Abrego, N., & Ovaskainen, O. (2018). Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences. New Phytologist, 220(2), 517-525. doi:10.1111/nph.15301

Abreu, N. L. d., Alves, R. J. V., Cardoso, S. R. S., Bertrand, Y. J. K., Sousa, F., Hall, C. F., . . . Antonelli, A. (2018). The use of next generation sequencing to solve phylogenetic incongruences in Orchidaceae Juss. PeerJ Preprints, 6, e26530v26531. doi:10.7287/peerj.preprints.26530v1

Andermann, T., Cano, Á., Zizka, A., Bacon, C., & Antonelli, A. (2018). SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments. PeerJ, 6, e5175. doi:10.7717/peerj.5175

Andermann, T., Fernandes, A. M., Olsson, U., Töpel, M., Pfeil, B., Oxelman, B., . . . Antonelli, A. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology, 68(1), 32-46. doi:10.1093/sysbio/syy039 %J Systematic Biology

Anslan, S., Nilsson, R. H., Wurzbacher, C., Baldrian, P., Leho, T., & Bahram, M. (2018). Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys(39), 29-40. doi:10.3897/mycokeys.39.28109

Antonelli, A., Ariza, M., Albert, J., Andermann, T., Azevedo, J., Bacon, C., . . . Edwards, S. V. (2018). Conceptual and empirical advances in Neotropical biodiversity research. PeerJ, 6, e5644. doi:10.7717/peerj.5644

Antonelli, A., Kissling, W. D., Flantua, S. G. A., Bermúdez, M. A., Mulch, A., Muellner-Riehl, A. N., . . . Hoorn, C. (2018). Geological and climatic influences on mountain biodiversity. Nature Geoscience, 11(10), 718-725. doi:10.1038/s41561-018-0236-z

Antonelli, A., & Perrigo, A. (2018). The science and ethics of extinction. Nature Ecology & Evolution, 2(4), 581-581. doi:10.1038/s41559-018-0500-z

Antonelli, A., & Perrigo, A. (2018). The pitfalls of taking science to the public. Science, 359(6373), 283. doi:10.1126/science.aar8468

Antonelli, A., Zizka, A., Carvalho, F. A., Scharn, R., Bacon, C. D., Silvestro, D., & Condamine, F. L. (2018). Amazonia is the primary source of Neotropical biodiversity. Proceedings of the National Academy of Sciences, 115(23), 6034. doi:10.1073/pnas.1713819115

Bacon, C. D., Velásquez-Puentes, F. J., Hinojosa, L. F., Schwartz, T., Oxelman, B., Pfeil, B., . . . Antonelli, A. (2018). Evolutionary persistence in Gunnera and the contribution of southern plant groups to the tropical Andes biodiversity hotspot. PeerJ, 6, e4388. doi:10.7717/peerj.4388

Bacon, C. D., Velásquez-Puentes, F. J., Hoorn, C., & Antonelli, A. (2018). Iriarteeae palms tracked the uplift of Andean Cordilleras. Journal of Biogeography, 45(7), 1653-1663. doi:10.1111/jbi.13350

Bengtsson-Palme, J., Kanger, K., Eriksson, K. M., Hartmann, M., Johnson, R. M., Richardson, R. T., . . . Thorell, K. (2018). Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. Bioinformatics, 34(23), 4027-4033. doi:10.1093/bioinformatics/bty482

Bennett, D. J., Hettling, H., Silvestro, D., Vos, R., & Antonelli, A. (2018). restez: Create and Query a Local Copy of GenBank in R. Journal of Open Source Software, 3(31), 1102.

Bennett, J. D., Hettling, H., Silvestro, D., Zizka, A., Bacon, D. C., Faurby, S., . . . Antonelli, A. (2018). phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. Life, 8(2). doi:10.3390/life8020020

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Rüger, N., Beck, P. S. A., . . . Weiher, E. (2018). Plant functional trait change across a warming tundra biome. Nature, 562(7725), 57-62. doi:10.1038/s41586-018-0563-7

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., . . . Zamin, T. (2018). Tundra Trait Team: A database of plant traits spanning the tundra biome. Global Ecology and Biogeography, 27(12), 1402-1411. doi:10.1111/geb.12821

Cano, Á., Bacon, C. D., Stauffer, F. W., Antonelli, A., Serrano-Serrano, M. L., & Perret, M. (2018). The roles of dispersal and mass extinction in shaping palm diversity across the Caribbean. Journal of Biogeography, 45(6), 1432-1443. doi:10.1111/jbi.13225

Carrillo-Briceño, J. D., Carrillo, J. D., Aguilera, O. A., & Sanchez-Villagra, M. R. (2018). Shark and ray diversity in the Tropical America (Neotropics)—an examination of environmental and historical factors affecting diversity. PeerJ, 6, e5313. doi:10.7717/peerj.5313

Conradie, W., Bittencourt-Silva, G. B., Farooq, H. M., Loader, S. P., Menegon, M., & Tolley, K. A. (2018). New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs. African Journal of Herpetology, 67(1), 61-85. doi:10.1080/21564574.2017.1376714

Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., . . . Baker, W. J. (2018). A roadmap for global synthesis of the plant tree of life. American Journal of Botany, 105(3), 614-622. doi:10.1002/ajb2.1041

Eriksson, J. S., de Sousa, F., Bertrand, Y. J. K., Antonelli, A., Oxelman, B., & Pfeil, B. E. (2018). Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology, 18(1), 9. doi:10.1186/s12862-018-1127-z

Faurby, S., & Antonelli, A. (2018). Evolutionary and ecological success is decoupled in mammals. Journal of Biogeography, 45(10), 2227-2237. doi:10.1111/jbi.13411

Faurby, S., & Araújo, M. B. (2018). Anthropogenic range contractions bias species climate change forecasts. Nature Climate Change, 8(3), 252-256. doi:10.1038/s41558-018-0089-x

Faurby, S., Davis, M., Pedersen, R. Ø., Schowanek, S. D., Antonelli, A., & Svenning, J.-C. (2018). PHYLACINE 1.2: The Phylogenetic Atlas of Mammal Macroecology. Ecology, 99(11), 2626-2626. doi:10.1002/ecy.2443

Ferreira, M., Fernandes, A. M., Aleixo, A., Antonelli, A., Olsson, U., Bates, J. M., . . . Ribas, C. C. (2018). Evidence for mtDNA capture in the jacamar Galbula leucogastra/chalcothorax species-complex and insights on the evolution of white-sand ecosystems in the Amazon basin. Molecular Phylogenetics and Evolution, 129, 149-157. doi:https://doi.org/10.1016/j.ympev.2018.07.007

Franco-Belussi, L., De Oliveira, C., & Sköld, H. N. (2018). Regulation of eye and jaw colouration in three-spined stickleback Gasterosteus aculeatus. Journal of Fish Biology, 92(6), 1788-1804. doi:10.1111/jfb.13620

Guedes, T. B., Sawaya, R. J., Zizka, A., Laffan, S., Faurby, S., Pyron, R. A., . . . Antonelli, A. (2018). Patterns, biases and prospects in the distribution and diversity of Neotropical snakes. Global Ecology and Biogeography, 27(1), 14-21. doi:10.1111/geb.12679

Gunnarsson, B., Wallin, J., & Klingberg, J. (2018). Predation by avian insectivores on caterpillars is linked to leaf damage on oak (Quercus robur). Oecologia, 188(3), 733-741. doi:10.1007/s00442-018-4234-z

Hagen, O., Andermann, T., Antonelli, A., Silvestro, D., & Quental, T. B. (2017). Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, 67(3), 458-474. doi:10.1093/sysbio/syx082 %J Systematic Biology

Hoorn, C., Perrigo, A., & Antonelli, A. (2018). Mountains, Climate and Biodiversity: An Introduction. In C. Hoorn, A. Perrigo, & A. Antonelli (Eds.), Moutnains, Climate and Biodiversity: Wiley.

Jaramillo, C., Montes, C., Cardona, A., Silvestro, D., Antonelli, A., & Bacon, C. D. (2018). Comment (1) on “Formation of the Isthmus of Panama” by O’Dea &lt;em&gt;et al&lt;/em&gt. Science Advances, 3(6), e1602321. doi:10.1126/sciadv.1602321

Korshunova, T., Fletcher, K., Lundin, K., Picton, B., & Martynov, A. (2018). The genus Zelentia is an amphi-boreal taxon expanded to include three new species from the North Pacific and Atlantic oceans (Gastropoda: Nudibranchia: Trinchesiidae). ZooTaxa, 4482, 297. doi:10.11646/zootaxa.4482.2.4

Korshunova, T., Lundin, K., Malmberg, K., Picton, B., & Martynov, A. (2018). First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution. PLOS ONE, 13(3), e0192177. doi:10.1371/journal.pone.0192177

Larsson, E., Kleine, J., Jacobsson, S., & Krikorev, M. (2018). Diversity within the Hygrophorus agathosmus group (Basidiomycota, Agaricales) in Northern Europe. Mycological Progress, 17(12), 1293-1304. doi:10.1007/s11557-018-1445-y

Larsson, E., Vauras, J., & Cripps, C. L. (2018). Inocybe praetervisa group – A clade of four closely related species with partly different geographical distribution ranges in Europe. Mycoscience, 59(4), 277-287. doi:https://doi.org/10.1016/j.myc.2017.11.002

Matos-Maraví, P., Clouse, R. M., Sarnat, E. M., Economo, E. P., LaPolla, J. S., Borovanska, M., . . . Janda, M. (2018). An ant genus-group (Prenolepis) illuminates the biogeography and drivers of insect diversification in the Indo-Pacific. Molecular Phylogenetics and Evolution, 123, 16-25. doi:https://doi.org/10.1016/j.ympev.2018.02.007

Matos-Maraví, P., Matzke, N. J., Larabee, F. J., Clouse, R. M., Wheeler, W. C., Sorger, D. M., . . . Janda, M. (2018). Taxon cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus). Molecular Ecology, 27(20), 4090-4107. doi:10.1111/mec.14835

Melo, W. A., Freitas, C. G., Bacon, C. D., & Collevatti, R. G. (2018). The road to evolutionary success: insights from the demographic history of an Amazonian palm. Heredity, 1.

Metcalfe, D. B., Hermans, T. D. G., Ahlstrand, J., Becker, M., Berggren, M., Björk, R. G., . . . Abdi, A. M. (2018). Patchy field sampling biases understanding of climate change impacts across the Arctic. Nature Ecology & Evolution, 2(9), 1443-1448. doi:10.1038/s41559-018-0612-5

Muscarella, R., Bacon, C. D., Faurby, S., Antonelli, A., Kristiansen, S. M., Svenning, J.-C., & Balslev, H. (2018). Soil fertility and flood regime are correlated with phylogenetic structure of Amazonian palm communities. doi:10.1093/aob/mcy196

Nilsson, R. H., Glöckner, F. O., Saar, I., Tedersoo, L., Kõljalg, U., Abarenkov, K., . . . Picard, K. (2018). The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research, 47(D1), D259-D264. doi:10.1093/nar/gky1022

Nilsson, R. H., Taylor, A. F. S., Adams, R. I., Baschien, C., Johan, B.-P., Cangren, P., . . . Abarenkov, K. (2018). Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys(28), 65-82. doi:10.3897/mycokeys.28.20887

Oxelman, B., Pfeil, B., Olsson, U., Andermann, T., Antonelli, A., Töpel, M., . . . Faircloth, B. C. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology, 68(1), 32-46. doi:10.1093/sysbio/syy039

Pearse, W. D., Barbosa, A. M., Fritz, S. A., Keith, S. A., Harmon, L. J., Harte, J., . . . Davies, T. J. (2018). Building up biogeography: Pattern to process. Journal of Biogeography, 45(6), 1223-1230. doi:10.1111/jbi.13242

Pérez-Consuegra, N., Parra, M., Jaramillo, C., Silvestro, D., Echeverri, S., Montes, C., . . . Escobar, J. (2018). Provenance analysis of the Pliocene Ware Formation in the Guajira Peninsula, northern Colombia: Paleodrainage implications. Journal of South American Earth Sciences, 81, 66-77. doi:https://doi.org/10.1016/j.jsames.2017.11.002

Pérez-Escobar, O. A., Cámara-Leret, R., Antonelli, A., Bateman, R., Bellot, S., Chomicki, G., . . . Jaramillo, C. (2018). Mining threatens Colombian ecosystems. Science, 359(6383), 1475-1475.

Piras, P., Silvestro, D., Carotenuto, F., Castiglione, S., Kotsakis, A., Maiorino, L., . . . Raia, P. (2018). Evolution of the sabertooth mandible: A deadly ecomorphological specialization. Palaeogeography, Palaeoclimatology, Palaeoecology, 496, 166-174. doi:https://doi.org/10.1016/j.palaeo.2018.01.034

Pires Mathias, M., Rankin Brian, D., Silvestro, D., & Quental Tiago, B. (2018). Diversification dynamics of mammalian clades during the K–Pg mass extinction. Biology Letters, 14(9), 20180458. doi:10.1098/rsbl.2018.0458

Ritter, C. D., Zizka, A., Barnes, C., Nilsson, R. H., Roger, F., & Antonelli, A. (2019). Locality or habitat? Exploring predictors of biodiversity in Amazonia. Ecography, 42(2), 321-333. doi:10.1111/ecog.03833

Ritter, C. D., Zizka, A., Roger, F., Tuomisto, H., Barnes, C., Nilsson, R. H., & Antonelli, A. (2018). High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia. PeerJ, 6, e5661. doi:10.7717/peerj.5661

Rolland, J., Silvestro, D., Litsios, G., Faye, L., & Salamin, N. (2018). Clownfishes evolution below and above the species level. Proceedings of the Royal Society B: Biological Sciences, 285(1873), 20171796. doi:10.1098/rspb.2017.1796

Rolland, J., Silvestro, D., Schluter, D., Guisan, A., Broennimann, O., & Salamin, N. (2018). The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity. Nature Ecology & Evolution, 2(3), 459-464. doi:10.1038/s41559-017-0451-9

Ryberg, M., & Nilsson, R. H. (2018). New light on names and naming of dark taxa. MycoKeys(30), 31-39. doi:10.3897/mycokeys.30.24376

Sandom, C. J., Faurby, S., Svenning, J. C., Burnham, D., Dickman, A., Hinks, A. E., . . . Macdonald, D. W. (2018). Learning from the past to prepare for the future: felids face continued threat from declining prey. Ecography, 41(1), 140-152. doi:10.1111/ecog.03303

Silva, G. A. R., Antonelli, A., Lendel, A., Moraes, E. d. M., & Manfrin, M. H. (2018). The impact of early Quaternary climate change on the diversification and population dynamics of a South American cactus species. Journal of Biogeography, 45(1), 76-88. doi:10.1111/jbi.13107

Silvestro, D., & Schnitzler, J. (2018). Inferring macroevolutionary dynamics in mountain systems from fossils. In Mountains, Climate, and Biodiversity: Wiley-Blackwell.

Silvestro, D., Warnock, R. C. M., Gavryushkina, A., & Stadler, T. (2018). Closing the gap between palaeontological and neontological speciation and extinction rate estimates. Nature Communications, 9(1), 5237. doi:10.1038/s41467-018-07622-y

Silvestro, D., Zizka, A., Tejedor, M. F., Antonelli, A., Serrano-Serrano, M. L., Loiseau, O., . . . Höhna, S. (2018). Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors. Systematic Biology, 68(1), 78-92. doi:10.1093/sysbio/syy046 %J Systematic Biology

Sjöman, H., Hirons, A. D., & Bassuk, N. L. (2018). Improving confidence in tree species selection for challenging urban sites: a role for leaf turgor loss. Urban Ecosystems, 21(6), 1171-1188. doi:10.1007/s11252-018-0791-5

Sjöman, H., Hirons, A. D., & Bassuk, N. L. (2018). Magnolias as urban trees – a preliminary evaluation of drought tolerance in seven magnolia species. Arboricultural Journal, 40(1), 47-56. doi:10.1080/03071375.2017.1415554

Stronen, A. V., Iacolina, L., Pertoldi, C., Kusza, S., Hulva, P., Dykyy, I., . . . Faurby, S. (2018). The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources. doi:10.1007/s12686-018-1036-x

Taboada, S., Riesgo, A., Wiklund, H., Paterson, G. L. J., Koutsouveli, V., Santodomingo, N., . . . Glover, A. G. (2018). Implications of population connectivity studies for the design of marine protected areas in the deep sea: An example of a demosponge from the Clarion-Clipperton Zone. Molecular Ecology, 27(23), 4657-4679. doi:10.1111/mec.14888

Töpel, M., Pinder, M. I. M., Johansson, O. N., Kourtchenko, O., Godhe, A., & Clarke, A. K. (2018). Complete Genome Sequence of &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-1&quot;&gt;Loktanella vestfoldensis&lt;/span&gt; Strain SMR4r, a Novel Strain Isolated from a Culture of the Chain-Forming Diatom &lt;span class=&quot;named-content genus-species&quot; id=&quot;named-content-2&quot;&gt;Skeletonema marinoi&lt;/span&gt. Genome Announcements, 6(12), e01558-01517. doi:10.1128/genomeA.01558-17

Vadell, E., Cavender, J. C., Landolt, J. C., Perrigo, A. L., Liu, P., & Stephenson, S. L. (2018). Five new species of dictyostelid social amoebae (Amoebozoa) from Thailand. BMC Evolutionary Biology, 18(1), 198. doi:10.1186/s12862-018-1328-5

Vowles, T., Lindwall, F., Ekblad, A., Bahram, M., Furneaux, B. R., Ryberg, M., & Björk, R. G. (2018). Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone. Ecology and Evolution, 8(2), 1019-1030. doi:10.1002/ece3.3657

Woutersen, A., Jardine, P. E., Bogotá-Angel, R. G., Zhang, H.-X., Silvestro, D., Antonelli, A., . . . Hoorn, C. (2018). A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon Nitraria L.(Nitrariaceae). PeerJ, 6, e5055. doi:10.7717/peerj.5055

Zizka, A., & Antonelli, A. (2018). Mountains of diversity. In: Nature Publishing Group.

2017

Branch IR, Guyton J, Schmitz A, Barej MF, Naskrecki P, Farooq H, Verburgt L, Rödel MR (2017) Description of a new flat gecko (Squamata: Gekkonidae: Afroedura) from Mount Gorongosa, Mozambique. Zootaxa DOI: 10.11646/zootaxa.4324.1.8

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D (2017) Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, DOI: 10.1093/sysbio/syx082

Wurzbacher C, Nilsson RH, Rautio M, Peura S (2017) Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.ISME Journal. DOI: 10.1038/ismej.2017.54

Sandova M, Nilsson RH, Kolarik M. (2017) Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella clades. Mycological Progress. DOI: 10.1007/s11557-017-1346-5

Nieto-Blázquez ME, Antonelli A, Roncal J (2017) Historical biogeography of endemic seed plant genera in the Caribbean: Did GAARlandia play a role? Ecology and Evolution. DOI: 10.1002/ece3.3521.

Nilsson RH, Sánchez-García M, Ryberg MK, Abarenkov K, Wurzbacher C, Kristiansson E. (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24.

Pessoa MCR, Persson C, Antonelli A, Barbosa MRV (2017) First record of Chomelia triflora (J.H. Kirkbr.) Delprete & Achille (Rubiaceae) from Brazil. Check List 13: 159-162. DOI: 10.15560/13.4.159

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD (2017) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances. DOI: 10.1126/sciadv.1602321

Lehtonen S, Silvestro D, Karger DN, Scotese C, Tuomisto H, Kessler M, Peña C, Wahlberg N, Antonelli A (2017) Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Scientific Reports. DOI: 10.1038/s41598-017-05263-7

Cámara-Leret R, Faurby S, Macía MJ, Balslev H, Göldel B, Svenning JC, Kissling WD, Rønsted N, Saslis-Lagoudakis CH (2017) Fundamental species traits explain provisioning services of tropical American palms. Nature Plants 3:16220. DOI: 10.1038/nplants.2016.220

Sandom CJ, Faurby S, Svenning JC, Burnham D, Dickman A, Hinks A, Macdonald EA, Ripple B, Williams J, Macdonald D (2017) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography. DOI: 10.1111/ecog.03303

Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W (2017) Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society 184: 32-45. DOI: 10.1093/botlinnean/box013

Gonçalez VM, Pfeil BE, Antonelli A, Duarte MC (2017) Two new species of Pavonia (Malvoideae, Malvaceae) from southern Bahia, Brazil. Phytotaxa 305:97-103, doi: 10.11646/phytotaxa.305.2.3

Antonelli A (2017) Drivers of bioregionalisation. Nature Ecology and Evolution 1, 0114 DOI: 10.1038/s41559-017-0114

Antonelli A, Hettling H, Condamine FL, Vos K, Nilsson RH, Sanderson J, Sauquet H, Scharn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA (2017) Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology 66 :152–166 DOI: 10.1093/sysbio/syw066

Edler D, Guedes T, Zizka A, Rosvall M, Antonelli A (2017) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. Systematic Biology 66:197–204. DOI: 10.1093/sysbio/syw087

Perez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarin D, Matzke N, Silvestro D, Antonelli A (2017). Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytologist. DOI: 10.1111/nph.14629.

Ritter CD, McGrate G, Nilsson RH, Fearnside PM, Palme U, Antonelli A (2017) Environmental Impact Statement of biodiversity: Challenges and prospects in biologically diverse environments in Brazilian Amazonia. Biological Conservation 206: 161–168. 
 

Bacon CD, Moraes M, Jaramillo C, Antonelli A (2017). Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras. Molecular Phylogenetics and Evolution 110:127-133. DOI: 10.1016/j.ympev.2017.03.013

Töpel M, Zizka A, Calió MF, Scharn R, Silvestro D, Antonelli A (2017) SpeciesGeoCoder: Fast categorization of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. Systematic Biology 66:145–151. DOI:10.1093/sysbio/syw064

Cruz GAS, Zizka G, Silvestro D, Leme EMC, Schulte K, Benko-Iseppon AM (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution. 107: 152-165.

Maldonado C, Persson C, Alban J, Antonelli A, Rønsted N (2017) Cinchona anderssonii (Rubiaceae), a new overlooked species from Bolivia. PhytoTaxa, 297: 203–208.

Maldonado C, Barnes CJ, Cornett C, Holmfred E, Hansen SH, Persson C, Antonelli A, Rønsted N (2017) Phylogeny Predicts the Quantity of Antimalarial Alkaloids Within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya). Frontiers in Plant Science 8:391.

Radek R, Wurzbacher C, Gisder S, Nilsson RH, Owerfeldt A, Genersch E, Kirk PM, Voigt K (2017) Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31-50. DOI: 10.3897/mycokeys.25.12446

Rova J, Persson C, Ljungstrand E, Antonelli A (2017) Lectotypification of Pentagonia macrophylla (Rubiaceae) revisited. Phytotaxa. DOI:10.11646/phytotaxa.311.3.10

Obst M, Vicario S, Lundin K, Berggren M, Karlsson A, Haines R, Williams A, Goble C, Mathew C, Güntsch A (2017) Marine long-term biodiversity assessment suggests loss of rare species in the Skagerrak and Kattegat region. Marine Biodiversity. DOI:10.1007/s12526-017-0749-5

Pimiento C, Griffin JN, Clements CF, Silvestro D, Varela S, Uhen MD, Jaramillo C (2017) The Pliocene marine megafauna extinction and its impact on functional diversity. Nature Ecology and Evolution DOI: 10.1038/s41559-017-0223-6

Töpel M, Pinder MIM, Johansson ON, Kourtchenko P, Godhe A, Clarke AK (2017) Genome Sequence of Roseovarius mucosus Strain SMR3, Isolated from a Culture of the Diatom Skeletonema marinoi. Genome Announcements 5: 22. DOI: 10.1128/genomeA.00394-17

Pedersen RØ , Faurby S, Svenning J-C (2017) Shallow size-density relations within mammal clades suggest greater intra-guild ecological impact of large-bodied species. Journal of Animal Ecology DOI: 10.1111/1365-2656.12701

Jeppson M, Altés A, Moreno G, Nilsson RH, Loarce Y, de Bustos A, Larsson E (2017) Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33-88. DOI: 10.3897/mycokeys.21.12176

Korshunova, T., Martynov, A., Bakken, T., Evertsen, J., Fletcher, K., Mudianta, I W., Saito, H., Lundin, K., Schrödl, M. & Picton, B. 2017. Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia (Mollusca, Gastropoda): aeolidacean taxonomic reassessment with description of several new families, genera and species. ZooKeys 717: 1–139. doi: 10.3897/zookeys.717.21885

Lundin, K., Korshunova, T., Malmberg, K. & Martynov, A. 2017. Intersections of historical museum collections and modern systematic methods: the case of a relict population of the Arctic nudibranch Dendronotus velifer G.O. Sars 1878 in a Swedish fjord. Contributions to Zoology, 86 (4): 303-318.

Vowles T, Lindwall F, Ekblad A, Bahram M, Ryberg M, Furneaux BR, and Björk RG (2017) Complex effects of mammalian grazing on extramatrical mycelia production in the Scandes forest-tundra ecotone. Ecology and Evolution, accepted. DOI:10.1002/ece3.3657.

Vowles T, Molau U, Gunnarsson B, Hickler T, Klemedtsson L, and Björk RG (2017) Expansion of deciduous shrubs but not evergreen dwarf shrubs inhibited by reindeer in Scandes mountain range. Journal of Ecology, 105(6): 1547-1561.

Vowles T, Lovehav C, Molau U, and Björk RG (2017) Contrasting impacts of reindeer grazing in two tundra grasslands. Environmental Research Letters, 12(3): 034018.