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Jonas Warringer
Senior Lecturer
Department of Chemistry & Molecular BiologyAbout Jonas Warringer
Cellular molecules, such as DNA, RNA, and proteins change across generations, creating heritable differences between cells and organisms and driving adaptation. Cancer, infection and resistance to chemotherapy and antibiotics are direct medical consequences of this molecular evolution. We combine the principles of evolutionary biology, population genetics and molecular and cellular biology to understand the rates and impacts of single nucleotide and copy number variations, the importance of neutral evolution vs. natural selection, the genetic nature of complex traits, and how changes to nuclear and organellar genomes influence aging, cancer and resistance to chemotherapy and antimicrobials. We often work with model microbes, such as the baker's yeast Saccharomyces cerevisiae, and the bacterium Escherichia coli, which is commonly found in the lower intestine of warm-blooded organisms. Our activities are at the interface between experimental and computational biology and use data from whole genome sequencing and automated measurements of cell growth, together with computational analysis and modelling and molecular and cellular biology techniques.
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Reproductive Isolation due to Divergent Ecological Selection Is Accompanied by Vast Genomic Instability in Experimentally Evolved Yeast
Populations
Devin P. Bendixsen, Ciaran Gilchrist, Chloé Haberkorn, Karl Persson, Cecilia Geijer, Jonas Warringer, Rike Stelkens
Molecular Ecology - 2025 -
Predicting natural variation in the yeast phenotypic landscape with machine
learning
Sakshi Khaiwal, Matteo De Chiara, Benjamin P. Barre, Inigo Barrio-Hernandez, Simon Stenberg, Pedro Beltrao, Jonas Warringer, Gianni Liti
MOLECULAR SYSTEMS BIOLOGY - 2025 -
Lactose-assimilating yeasts with high fatty acid accumulation uncovered by untargeted
bioprospecting
Karl Persson, Vanessa O. Onyema, Ijeoma Princess Nwafor, Kameshwara V. R. Peri, Chika Otti, Priscilla Nnaemeka, Chioma Onyishi, Sylvia Okoye, Anene Moneke, Onyetugo Amadi, Jonas Warringer, Cecilia Geijer
APPLIED AND ENVIRONMENTAL MICROBIOLOGY - 2025 -
Quantifying massively parallel microbial growth with spatially mediated
interactions.
Florian Borse, Dovydas Kičiatovas, Teemu Kuosmanen, Mabel Vidal, Guillermo Cabrera-Vives, Johannes Cairns, Jonas Warringer, Ville Mustonen
PLoS Computational Biology - 2024 -
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic
phenotypes
Payam Ghiaci, Paula Jouhten, Nikolay Martyushenko, Helena Roca-Mesa, Jennifer Vazquez, Dimitrios Konstantinidis, Simon Stenberg, Sergej Andrejev, Kristina Grkovska, Albert Mas, Gemma Beltran, Eivind Almaas, Kiran R. Patil, Jonas Warringer
MOLECULAR SYSTEMS BIOLOGY - 2024 -
Ancient and recent origins of shared polymorphisms in
yeast
Nicolo Tellini, Matteo De Chiara, Simone Mozzachiodi, Lorenzo Tattini, Chiara Vischioni, Elena S. Naumova, Jonas Warringer, Anders Bergstroem, Gianni Liti
NATURE ECOLOGY & EVOLUTION - 2024 -
Scaling-up the biodiversity-ecosystem functioning relationship: the effect of environmental heterogeneity on transgressive
overyielding
Lars Gamfeldt, James Hagan, Anne Farewell, Martin Palm, Jonas Warringer, Fabian Roger
Oikos - 2023 -
Chemical-genomic profiling identifies genes that protect yeast from aluminium, gallium, and indium
toxicity.
Yves Schulze, Payam Ghiaci, Liqian Zhao, Marc Biver, Jonas Warringer, Montserrat Filella, Markus J. Tamás
Metallomics : integrated biometal science - 2023 -
Genome instability footprint under rapamycin and hydroxyurea
treatments
J. Li, Simon Stenberg, J. X. Yue, E. Mikhalev, D. Thompson, Jonas Warringer, G. Liti
PLoS Genetics - 2023 -
Adaptation of the yeast gene knockout collection is near-perfectly predicted by fitness and diminishing return
epistasis.
Karl Persson, Simon Stenberg, Markus J. Tamás, Jonas Warringer
G3 (Bethesda, Md.) - 2022 -
Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative
phosphorylation.
Simon Stenberg, Jing Li, Arne B Gjuvsland, Karl Persson, Erik Demitz-Helin, Carles González Peña, Jia-Xing Yue, Ciaran Gilchrist, Timmy Ärengård, Payam Ghiaci, Lisa Larsson-Berglund, Martin Zackrisson, Silvana Smits, Johan Hallin, Johanna L Höög, Mikael Molin, Gianni Liti, Stig W Omholt, Jonas Warringer
eLife - 2022 -
Domestication reprogrammed the budding yeast life
cycle
M. De Chiara, B. P. Barré, Karl Persson, A. Irizar, C. Vischioni, S. Khaiwal, Simon Stenberg, Onyetugo Chioma Amadi, G. Žun, K. Doberšek, C. Taccioli, J. Schacherer, U. Petrovič, Jonas Warringer, G. Liti
Nature Ecology and Evolution - 2022 -
Predictive evolution of metabolic phenotypes using model-designed
environments
P. Jouhten, D. Konstantinidis, F. Pereira, S. Andrejev, K. Grkovska, S. Castillo, Payam Ghiaci, G. Beltran, E. Almaas, A. Mas, Jonas Warringer, R. Gonzalez, P. Morales, K. R. Patil
Molecular Systems Biology - 2022 -
Genome-Wide Association Study Reveals Host Factors Affecting Conjugation in Escherichia
coli
L. Van Wonterghem, M. De Chiara, G. Liti, Jonas Warringer, Anne Farewell, N. Verstraeten, J. Michiels
Microorganisms - 2022 -
Mutagenic mechanisms of cancer-associated DNA polymerase epsilon
alleles
M. Herzog, Eliza Alonso-Perez, I. Salguero, Jonas Warringer, D. J. Adams, S. P. Jackson, F. Puddu
Nucleic acids research - 2021 -
Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli
Genomes.
Sam Benkwitz-Bedford, Martin Palm, Talip Yasir Demirtas, Ville Mustonen, Anne Farewell, Jonas Warringer, Leopold Parts, Danesh Moradigaravand
mSystems - 2021 -
Aborting meiosis allows recombination in sterile diploid yeast
hybrids
S. Mozzachiodi, L. Tattini, A. Llored, A. Irizar, N. Skofljanc, M. D'Angiolo, M. De Chiara, B. P. Barre, J. X. Yue, A. Lutazi, S. Loeillet, R. Laureau, S. Marsit, S. Stenberg, B. Albaud, K. Persson, J. L. Legras, S. Dequin, Jonas Warringer, A. Nicolas, G. Liti
Nature Communications - 2021 -
Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in
Mexico
R. Murphy, Martin Palm, V. Mustonen, Jonas Warringer, Anne Farewell, L. Parts, D. Moradigaravand
mSphere - 2021 -
A High-Throughput Method for Screening for Genes Controlling Bacterial Conjugation of Antibiotic
Resistance.
Hanna Alalam, Fabrice Graf, Martin Palm, Marie Abadikhah, Martin Zackrisson, Jonas Boström, Alfred Fransson, Chris Hadjineophytou, Linnéa Persson, Simon Stenberg, Matilda Mattsson, Payam Ghiaci, Per Sunnerhagen, Jonas Warringer, Anne Farewell
mSystems - 2020 -
Protein kinase A controls yeast growth in visible
light
Mikael Molin, Katarina Logg, Kristofer Bodvard, Ken Peeters, Annabelle Forsmark, Friederike Roger, Anna Jörhov, Neha Mishra, Jean-Marc Billod, Sabiha Amir, Mikael Andersson, Leif A Eriksson, Jonas Warringer, Mikael Käll, Anders Blomberg
BMC biology - 2020 -
Intragenic repeat expansion in the cell wall protein gene HPF1 controls yeast chronological
aging
B. P. Barré, J. Hallin, J. X. Yue, Karl Persson, E. Mikhalev, A. Irizar, S. Holt, D. Thompson, M. Molin, Jonas Warringer, G. Liti
Genome research - 2020 -
A yeast living ancestor reveals the origin of genomic
introgressions
M. D'Angiolo, M. De Chiara, J. X. Yue, A. Irizar, Simon Stenberg, Karl Persson, A. Llored, B. Barre, J. Schacherer, R. Marangoni, E. Gilson, Jonas Warringer, G. Liti
Nature - 2020 -
Shared Molecular Targets Confer Resistance over Short and Long Evolutionary
Timescales
J. Li, I. Vázquez-García, Karl Persson, A. González, J. X. Yue, B. Barré, M. N. Hall, A. Long, Jonas Warringer, V. Mustonen, G. Liti
Molecular biology and evolution - 2019 -
Inhibiting conjugation as a tool in the fight against antibiotic
resistance
Fabrice Graf, Martin Palm, Jonas Warringer, Anne Farewell
Drug Development Research - 2019 -
High throughput screening of growth on sub-MIC antibiotics and conjugation efficiency of a collection of natural E. coli
isolates
Martin Palm, Fabrice Graf, Owens Uwangue, Marta Tous Mohedano, Daniel Jaén-Luchoro, Edward R.B. Moore, Jonas Warringer, Anne Farewell
International Symposium of the International Society for Plasmid Biology and other Mobile Genetic Elements - 2018 -
Horizontal transmission factors spreading antibiotic
resistance
Fabrice Graf, Hanna Alalam, Martin Zackrisson, Martin Palm, Payam Ghiaci, Per Sunnerhagen, Jonas Warringer, Anne Farewell
International Symposium of the International Society for Plasmid Biology and other Mobile Genetic Elements - 2018 -
Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome
data.
Danesh Moradigaravand, Martin Palm, Anne Farewell, Ville Mustonen, Jonas Warringer, Leopold Parts
PLoS computational biology - 2018 -
Conjugation factors controlling F-plasmid antibiotic resistance
transmission
Hanna Alalam, Fabrice Graf, Martin Palm, Marie Abadikhah, Martin Zackrisson, Matilda Mattsson, Chris Hadjineophytou, Linnèa Persson, Simon Stenberg, Payam Ghiaci, Per Sunnerhagen, Jonas Warringer, Anne Farewell
BioRxiv - 2018 -
Yeast reciprocal hemizygosity to confirm the causality of a quantitative trait loci-associated
gene
Jonas Warringer, G. Liti, Anders Blomberg
Cold Spring Harbor Protocols - 2017 -
Horizontal transmission factors spreading antibiotic
resistance
Fabrice Graf, Hanna Alalam, Martin Zackrisson, Per Sunnerhagen, Jonas Warringer, Anne Farewell
7th Congress of European Microbiologists (FEMS 2017) - 2017 -
Mapping quantitative trait loci in
yeast
G. Liti, Jonas Warringer, Anders Blomberg
Cold Spring Harbor Protocols - 2017 -
Isolation and laboratory domestication of natural yeast
strain
G. Liti, Jonas Warringer, Anders Blomberg
Cold Spring Harbor Protocols - 2017 -
Clonal Heterogeneity Influences the Fate of New Adaptive
Mutations
I. Vazquez-Garcia, F. Salinas, J. Li, A. Fischer, B. Barre, J. Hallin, A. Bergstrom, Eliza Alonso-Perez, Jonas Warringer, V. Mustonen, G. Liti
Cell Reports - 2017 -
PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth
phenomics
Luciano Fernandez-Ricaud, Olga Kourtchenko, Martin Zackrisson, Jonas Warringer, Anders Blomberg
Bmc Bioinformatics - 2016 -
Replenishment and mobilization of intracellular nitrogen pools decouples wine yeast nitrogen uptake from
growth.
Alicia Gutiérrez, Marta Sancho, Gemma Beltran, José Manuel Guillamon, Jonas Warringer
Applied microbiology and biotechnology - 2016 -
Disentangling genetic and epigenetic determinants of ultrafast
adaptation.
Arne B Gjuvsland, Enikö Zörgö, Jeevan Ka Samy, Simon Stenberg, Ibrahim H Demirsoy, Francisco Roque, Ewa Maciaszczyk-Dziubinska, Magdalena Migocka, Eliza Alonso-Perez, Martin Zackrisson, Robert Wysocki, Markus J. Tamás, Inge Jonassen, Stig W Omholt, Jonas Warringer
Molecular systems biology - 2016 -
Scan-o-matic: High-Resolution Microbial Phenomics at a Massive
Scale
Martin Zackrisson, Johan Hallin, Lars-Göran Ottosson, Peter Dahl, Esteban Fernandez-Parada, Erik Ländström, Luciano Fernandez-Ricaud, Petra Kaferle, Andreas Skyman, Simon Stenberg, Stig Omholt, Uros Petrovic, Jonas Warringer, Anders Blomberg
G3: Genes, Genomes, Genetics - 2016 -
Powerful decomposition of complex traits in a diploid
model
J. Hallin, K. Martens, A. I. Young, Martin Zackrisson, F. Salinas, L. Parts, Jonas Warringer, G. Liti
Nature Communications - 2016 -
The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene
regulons.
José García-Martínez, Lidia Delgado-Ramos, Guillermo Ayala, Vicent Pelechano, Daniel A Medina, Fany Carrasco, Ramón González, Eduardo Andrés-León, Lars Steinmetz, Jonas Warringer, Sebastián Chávez, José E Pérez-Ortín
Nucleic acids research - 2016 -
Predicting quantitative traits from genome and phenome with near perfect
accuracy.
Kaspar Märtens, Johan Hallin, Jonas Warringer, Gianni Liti, Leopold Parts
Nature communications - 2016 -
Budding Yeast Strains and Genotype-Phenotype
mapping
G Liti, Jonas Warringer, Anders Blomberg
CSHL protocol series “Budding Yeast: A Laboratory Manual” - 2015 -
Concerted Evolution of Life Stage Performances Signals Recent Selection on Yeast Nitrogen
Use.
Sebastian Ibstedt, Simon Stenberg, Sara Bagés, Arne B Gjuvsland, Francisco Salinas, Olga Kourtchenko, Jeevan K A Samy, Anders Blomberg, Stig W Omholt, Gianni Liti, Gemma Beltran, Jonas Warringer
Molecular biology and evolution - 2015 -
High-throughput biochemical fingerprinting of Saccharomyces cerevisiae by Fourier transform infrared
spectroscopy
A. Kohler, U. Böcker, V. Shapaval, Annabelle Forsmark, Mats X. Andersson, Jonas Warringer, H. Martens, S. W. Omholt, Anders Blomberg
PLoS ONE - 2015 -
Yeast Phenomics – Large-Scale Mapping of the Genetic Basis for Organismal
Traits
Jonas Warringer, Anders Blomberg
Phenomics - 2014 -
A high-definition view of functional genetic variation from natural yeast
genomes.
Anders Bergström, Jared T Simpson, Francisco Salinas, Benjamin Barré, Leopold Parts, Amin Zia, Alex N Nguyen Ba, Alan M Moses, Edward J Louis, Ville Mustonen, Jonas Warringer, Richard Durbin, Gianni Liti
Molecular biology and evolution - 2014 -
Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces
pombe.
William R A Brown, Geraint Thomas, Nicholas C O Lee, Martin Blythe, Gianni Liti, Jonas Warringer, Matthew W Loose
Proceedings of the National Academy of Sciences of the United States of America - 2014 -
Ancient Evolutionary Trade-Offs between Yeast Ploidy
States
Enikö Zörgö, Karolina Chwialkowska, A. B. Gjuvsland, Elena Garre, Per Sunnerhagen, G. Liti, Anders Blomberg, S. W. Omholt, Jonas Warringer
PLoS Genetics - 2013 -
High-resolution mapping of complex traits with a four-parent advanced intercross yeast
population.
Francisco A Cubillos, Leopold Parts, Francisco Salinas, Anders Bergström, Eugenio Scovacricchi, Amin Zia, Christopher J R Illingworth, Ville Mustonen, Sebastian Ibstedt, Jonas Warringer, Edward J Louis, Richard Durbin, Gianni Liti
Genetics - 2013 -
A role for Myh1 in DNA repair after treatment with strand-breaking and crosslinking chemotherapeutic
agents
Kristina Jansson, John Patrick Alao, kristina Viktorsson, Jonas Warringer, Rolf Lewensohn, Per Sunnerhagen
Environmental and Molecular Mutagenesis - 2013 -
Genetic Basis of Variations in Nitrogen Source Utilization in Four Wine Commercial Yeast
Strains
A. Gutierrez, G. Beltran, Jonas Warringer, J. M. Guillamon
Plos One - 2013
More publications
We have limited the number of publications on this page. Visit GUP (The Publication Database for Gothenburg University) to find more publications.