Publications

Behbehani, M., Uddin, S., Dupont, S., Fowler, S. W., Gorgun, A. U., Al-Enezi, Y., ... & Faizuddin, M. (2023). Ocean Acidification-Mediated Food Chain Transfer of Polonium between Primary Producers and Consumers. Toxics, 11(1), 14. 

Belivermiş, M., Kılıç, Ö., Gezginci-Oktayoglu, S., Sezer, N., Demiralp, S., Şahin, B., & Dupont, S. (2023). Physiological and gene expression responses of the mussel Mytilus galloprovincialis to low pH and low dissolved oxygen. Marine Pollution Bulletin, 187, 114602.

Rühmkorff, S., Wolf, F., Vajedsamiei, J., Barboza, F.R., Hiebenthal, C. & Pansch, C. (2023) Marine heatwaves and upwelling shape stress responses in a keystone predator. Proceedings of the Royal Society B.

Andersson B, Rengefors K, Kourtchenko O, Johannesson K, Berglund O, Filipsson HL. (2022) Cross-contamination risks in sediment-based resurrection studies of phytoplankton. Limnology and Oceanography Letters, doi:10.1002/lol2.10291

Atmore LM, Martínez-García L, Makowiecki D, André C, Lõugas L, Barrett JH, Star B. (2022) Population dynamics of Baltic herring since the Viking Age revealed by ancient DNA and genomics. Proceedings of the National Academy of Sciences (PNAS), doi:10.1073/pnas.2208703119

Berdan E. (2022) Demographic effects may affect adaptation to islands. Peer Community in Evolutionary Biology, 100153. doi:10.24072/pci.evolbiol.100153

Berdan EL, Blanckaert A, Butlin RK, Flatt T, Slotte T, Wielstra B. (2022) Mutation accumulation opposes polymorphism:supergenes and the curious case of balanced lethals. Philosophical Transactions of the Royal Society B. B377: 20210199. doi:10.1098/rstb.2021.0199

Berdan EL, Flatt T, Kozak GM, Lotterhos KE, Wielstra B. (2022) Genomic architecture of supergenes: connecting form and function. Philosophical Transactions of the Royal Society B.  B377:20210192. doi:10.1098/rstb.2021.0192

Blom EL, Wilson JR, Kvarnemo C, Amorim MCP, Svensson O. (2022) Male acoustic display in the sand goby – Essential cue in female choice, but unaffected by supplemental feeding. Journal of Experimental Marine Biology and Ecology, doi:10.1016/j.jembe.2022.151791

Bolnick, D. I., Hund, A. K., Nosil, P., Peng, F., Ravinet, M., Stankowski, S., ... & Yukilevich, R. (2022). A multivariate view of the speciation continuum. Evolution. 

Bommarito C, Wahl M, Thieltges DW, Pansch C, Zucchetta M, Pranovi F. (2022) Biotic and abiotic drivers affect parasite richness, prevalence and abundance in Mytilus galloprovincialis along the Northern Adriatic Sea. Parasitology 1-9, doi:10.1017/S0031182021001438

Bosso L, Smeraldo S, Russo D, Chiusano ML, Bertorelle G, Johannesson K, Butlin RK, Danovaro R, Raffini F. (2022) The rise and fall of an alien: why the successful colonizer Littorina saxatilis failed to invade the Mediterranean Sea. Biological Invasions, doi: 10.1007/s10530-022-02838-y

Brennan RS, deMayo JA, Dam HG, Finiguerra M, Baumann H, Vince Buffalo V, Pespenia MH. (2022) Experimental evolution reveals the synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod. PNAS 119 (38) e2201521119, doi:10.1073/pnas.2201521119

De Jode A, Le Moan A, Johannesson K, Faria R, Stankowski S, Westram A, Butlin R, Rafajlović M, Fraïsse C. (2022) Ten years of demographic modelling of divergence and speciation in the sea. Evolutionary Applications, doi:10.1111/eva.13428

De Wit, P., Faust, E., Green, L., Jahnke, M., Pereyra, R. T., & Rafajlović, M. (2022). A decade of progress in marine evolutionary biology. Evolutionary Applications. 

Didier A,…[De Jode A,]...et al. (2022). Biodiversity, climate change, and adaptation in the Mediterranean. Ecosphere, 13(4), doi:10.1002/ecs2.3915

Duffy JE,…[Jahnke M,]…Olsen JL. (2022). A Pleistocene legacy structures variation in modern seagrass ecosystems. Proceedings of the National Academy of Sciences (PNAS), doi: 10.1073/pnas.2121425119

Durland E, Wit, PD, Langdon C. (2022). Genetic changes in larval oysters are more abundant and dynamic than can be explained by rare events or error: a response to Hedgecock (2022). Proceedings of the Royal Society B, 289(1976), doi:10.1098/rspb.2022.0197

Elphick M, Dupont S. (2022). Obituary: Michael C. Thorndyke (1946–2022). Journal of the Marine Biological Association of the United Kingdom, 1-3. doi:10.1017/S0025315422000704

Eriksson M, Kinnby A, De Wit P, Rafajlović M. (2022) Adaptive, maladaptive, neutral, or absent plasticity: Hidden caveats of reaction norms. Evolutionary Applications, doi:10.1111/eva.13482

Eriksson M, Rafajlović M. (2022) The role of phenotypic plasticity in the establishment of range margins. Philosophical Transactions Royal Society B 377: 20210012. doi:10.1098/rstb.2021.0012. One contribution of 11 to a theme issue ‘Species’ ranges in the face of changing environments (part I)'.

Gerhard M, … [Pansch C],… et al. (2022), Environmental variability in aquatic ecosystems: Avenues for future multifactorial experiments. Limnology and Oceanography Letters. doi:0.1002/lol2.10286  

Green L, Faust E, Hinchcliffe J, Brijs J, Holmes A, Englund Örn F, Svensson O, Roques JAC, Leder EH, Sandblom E, Kvarnemo C. (2022). Invader at the edge - genomic origins and physiological differences of round gobies across a steep urban salinity gradient. Evolutionary Applications, doi:10.1111/eva.13437

Gutiérrez-Valencia J,…[Berdan EL],…et al. (2022). Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Current Biology, doi:10.1016/j.cub.2022.08.042

Hassan, S., Haleemath Sameer, S., Töpel, M., & Aronsson, H. (2022). MSALigMap—A Tool for Mapping Active-Site Amino Acids in PDB Structures onto Known and Novel Unannotated Homologous Sequences with Similar Function. Life, 12(12), 2082.

Hattich, G. S., Listmann, L., Havenhand, J., Reusch, T. B., & Matthiessen, B. (2022). Temporal variation in ecological and evolutionary contributions to phytoplankton functional shifts. Limnology and Oceanography. 

Hearn KE, Koch EL, Stankowski S, Butlin RK, Faria R, Johannesson K, Westram AM. (2022), Differing associations between sex determination and sex-linked inversions in two ecotypes of Littorina saxatilis. Evolution Letters. doi:10.1002/evl3.295

Henriksson S, Pereyra RT, Sodeland M, Ortega-Martinez O, Knutsen H, Wennhage H, André C. (2022) Mixed origin of juvenile Atlantic cod (Gadus morhua) along the Swedish west coast. bioRxiv, doi:10.1101/2022.06.03.494672

Hyndes GA, Berdan E, Duarte C, Dugan JE, Emery KA, Hambäck PA, Henderson CJ, Hubbard DM, Lastra M, Mateo MA, Olds A, Schlacher TA. (2022) The role of inputs of marine wrack and carrion in sandy-beach ecosystems: a global review. Biological Reviews, doi:10.1111/brv.12886

Jahnke M, Jonsson PR. (2022) Biophysical models of dispersal contribute to seascape genetic analyses. Philosophical Transactions Royal Society B 377: 20210024.  doi:10.1098/rstb.2021.0024. One contribution of 11 to a theme issue ‘Species’ ranges in the face of changing environments (part I)'.

Jahnke M, Moknes PO, Le-Moan A, Martens GA, Jonsson PR. (2022) Seascape genomics identify adaptive barriers correlated to tidal amplitude in the shore crab Carcinus maenas. Molecular Ecology, doi:10.1111/mec.16371.

Johannesson K, Leder EH, André C, Dupont S, Eriksson SP, Harding K, Havenhand JN, Jahnke M, Jonsson PR, Kvarnemo C, Pavia H, Rafajlović M, Rödström EM, Thorndyke M, Blomberg A. (2022) Ten years of marine evolutionary biology - challenges and achievements of a multidisciplinary research initiative. Evolutionary applications. doi: 10.1111/eva.13389. First published: 26 April 2022.

Koch EL, Ravinet M, Westram AM, Johannesson K, Butlin RK. (2022). Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution. Evolution. doi:10.1111/evo.14602

Knutsen H, Catarino D, Rogers L, Sodeland M, Mattingsdal M, Jahnke M, Hutchings JA, Mellerud I, Espeland SH, Johanneson K, Roth O, Hansen MM, Jentof, S, André C, Jorde PE. (2022). Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species. Molecular Ecology, 00, 1– 16. doi:10.1111/mec.16415

Kvarnemo C, Green L, Svensson O, Lindström K, Schöld S, Griful-Dones M, Havenhand JN, Leder EH. (2022). Molecular, behavioural and morphological comparisons of sperm adaptations in a fish with alternative reproductive tactics. Evolutionary Applications, doi:10.1111/eva.13438

Le Moan A, Panova M, De Jode A, Ortega-Martinez O, Duvetorp M, Faria R, Butlin R, Johannesson K. (2022) An allozyme polymorphism is associated with a large chromosomal inversion in the marine snail Littorina fabalis. Evolutionary Applications, doi:10.1111/eva.13427

Logg K, Andersson M, Blomberg A, Molin M. (2022). High-throughput growth measurements of yeast exposed to visible light. Bio-protocol 12(02): e4292. DOI: 10.21769/BioProtoc.4292.

Moyano, M., Illing, B., Akimova, A., Alter, K., Bartolino, V., Börner, G., … Mittermayer, F., … & Polte, P. (2022). Caught in the middle: Bottom-up and top-down processes impacting recruitment in a small pelagic fish. Reviews in Fish Biology and Fisheries, 1-30.

Nicol S, Lehodey P, Senina I, Bromhead D, Frommel A, Hampton J, Havenhand J, Margulies D, Munday P, Scholey V, Williamson J, Smith N. (2022) Ocean Futures for the World’s Largest Yellowfin Tuna Population Under the Combined Effects of Ocean Warming and Acidification. Frontiers in Marine Science. 9. 816772. 10.3389/fmars.2022.816772.

Noisette F,  Pansch C, Wall M, Wahl M, Hurd CL. (2022) Role of hydrodynamics in shaping chemical habitats and modulating the responses of coastal benthic systems to ocean global change. Global Change Biology 28:3812-3829, doi:10.1111/gcb.16165

Nour OM, Pansch C, Stumpp M. (2022) Freshening and warming may restrict dispersal of Hemigrapsus takanoi into the Baltic Proper due to interactive effects on larval survival and feeding. Marine Biology 169, 125 (2022). doi:10.1007/s00227-022-04112-0

Ord J, Gossmann TI, Adrian-Kalchhauser I. (2022) High nucleotide diversity accompanies differential DNA methylation in naturally diverging populations. bioRxiv, doi:10.08.511291 

Pansch C, Raatz M, Comeau S, Hui TTY, Havenhand JN, Vajedsamiei J, Cornwall CE. (2022). Editorial: Influence of Environmental Variability on Climate Change Impacts in Marine Ecosystems. Frontiers in Marine Science – Global Change and the Future Ocean (DOI: 10.3389/fmars.2022.994756)

Panova MA, Varfolomeeva MA, Gafarova ER, Maltseva AL, Mikhailova NA, Granovitch AI. First insights into the gut microbiomes and the diet of the Littorina snail ecotypes, a recently emerged marine evolutionary model. Evolutionary Applications, doi:10.1111/eva.13447

Pereyra RT, Rafajlović M, De Wit P, Pinder M, Kinnby A, Töpel M, Johannesson K. (2022) Clones on the run - the genomics of a recently expanded facultative asexual species. bioRxiv 2022.05.11.491277; doi: 10.1101/2022.05.11.491277

Perini S, Butlin R, Westram A, Johannesson K. (2022). Very short mountings are enough for sperm transfer in Littorina saxatilis. Journal of Molluscan Studies, 88(1), eyab049. doi:10.1093/mollus/eyab049

Pinseel E, Nakov T, Van den Berge K, Downey KM, Judy KJ, Kourtchenko O, Kremp A, Ruck EC, Sjöqvist C, Töpel M, Godhe A, Alverson AJ. (2022) Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline. The ISME Journal, 1-12. doi:10.1038/s41396-022-01230-x

Rafajlović M, Alexander JM, Butlin RK, Johannesson K. (2022) Preface. Species' ranges in the face of changing environments (Part I). Philosophical Transactions Royal Society B 377: 20210491. doi:10.1098/rstb.2021.0491. One contribution of 11 to a theme issue ‘Species’ ranges in the face of changing environments (part I)'.

Rafajlović M, Alexander JM, Butlin RK, Johannesson K. (2022) Introduction to the theme issue ‘Species' ranges in the face of changing environments’. Philosophical Transactions Royal Society B 377: 2021000220210002, doi:10.1098/rstb.2021.0002.

Reeve J, Li Q, Lindtke D, Yeaman S. (2022) Comparing genome scans among species of the stickleback order reveals three different patterns of genetic diversity. Ecology and Evolution, doi:10.1002/ece3.8502

Rieder J, Martin-Sanchez PM, Osman OA, Adrian-Kalchhauser I, Eiler A. (2022) Detecting aquatic pathogens with field-compatible dried qPCR assays. Journal of Microbiological Methods, doi:10.1016/j.mimet.2022.106594

Rettig, K., Hansen, A. S., Obst, M., Hering, D., & Feld, C. K. (2022). A bayesian network to inform the management of key species in Kosterhavet National Park under contrasting storylines of environmental change. Estuarine, Coastal and Shelf Science, 108158.

Ruocco M, Jahnke M, Silva J, Procaccini G, Dattolo E. (2022) 2b-RAD Genotyping of the Seagrass Cymodocea nodosa Along a Latitudinal Cline Identifies Candidate Genes for Environmental Adaptation. Frontiers in Genetics, 16 May 2022 | doi:10.3389/fgene.2022.866758

Sefbom J, Kremp A, Hansen PJ, Johannesson K, Godhe A, Rengefors K. (2022). Local adaptation through countergradient selection in Northern Populations of Skeletonema marinoi. Evolutionary Applications, doi:10.1111/eva.13436

Sodeland M, Jentoft S, Jorde PE, Mattingsdal M, Albretsen J, Kleiven AR, Synnes AEW, Espeland SH,  Olsen EM,  Andrè C, Stenseth NC, Knutsen H. (2022) Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation. Proceedings of the National Academy of Sciences, Feb 2022, 119 (8) e2114904119; DOI:10.1073/pnas.2114904119

Stankowski S, Zagrodzka ZB, Galindo J, Montaño-Rendón M, Faria R, Mikhailova N, Blakeslee AMH, Arnason E, Broquet T, Morales HE, Grahame JW, Westram AM, Johannesson K, Butlin RK. (2022) Whole-genome phylogeography of the intertidal snail Littorina saxatilis. Authorea. December 05, 2022. doi:10.22541/au.167024888.84660705/v1

Steinhagen, S., Kramár, L., & Toth, G. B. (2022). The unheeded existence of the tubular greens: molecular analyses reveal the distribution of a new Ulva species (Ulvophyceae, Chlorophyta), Ulva capillata sp. nov. in the Atlantic-Baltic Sea transect. Journal of Applied Phycology, 1-14

Thor, P., Vermandele, F., Bailey, A., Guscelli, E., Loubet-Sartrou, L., Dupont, S., & Calosi, P. (2022). Ocean acidification causes fundamental changes in the cellular metabolism of the Arctic copepod Calanus glacialis as detected by metabolomic analysis. Scientific Reports, 12(1), 22223.

Tomasini M,  Eriksson M, Johannesson K, Rafajlović M. (2022) Species’ ranges and the steepening-gradient hypothesis. bioRxiv, doi: 10.1101/2022.03.19.484973 

Tomasini M, Peischl S. (2022) The role of spatial structure in multi-deme models of evolutionary rescue. Journal of Evolutonary Biology, doi:10.1111/jeb.14018

Westram AM, Faria R, Johannesson K, Butlin R, Barton N. (2022) Inversions and parallel evolution. Philosophical Transactions of the Royal Society B. B377: 20210203. doi:10.1098/rstb.2021.0203

Wolf F, Seebass K, Pansch P. (2022) The role of recovery phases in mitigating the negative impacts of marine heatwaves on the sea star Asterias rubens. Frontiers Marine Science 8:790241, doi:10.3389/fmars.2021.790241

Wåhlström I, Hammar L, Hume D, Pålsson J, Almroth-Rosell E, Dieterich C, Arneborg L, Gröger M, Mattsson M, Zillén Snowball L, Kågesten G, Törnqvist O, Breviere E, Brunnabend SE, Jonsson PR. (2022). Projected climate change impact on a coastal sea—As significant as all current pressures combined. Global Change Biology, doi:10.1111/gcb.16312, First published: 22 June 2022.

Alm Rosenblad M, Abramova A, Lind U, Ólason P, Giacomello S, Nystedt B, Blomberg A. Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions. Marine Biotechnology  23, 402-416 (2021)  doi: 10.1007/s10126-021-10033-8. 

Andersson B, Godhe A, Filipsson HL, Zetterholm L, Edler L, Berglund O, Rengefors K. 2021. Intraspecific variation in metal tolerance modulate competition between two marine diatoms. The ISME journal. doi:10.1038/s41396-021-01092-9

Berdan EL, Blanckaert A, Butlin RK, Bank C. (2021) Deleterious mutation accumulation and the long-term fate of chromosomal inversions. PLoS Genetics 17(3): e1009411. doi:10.1371/journal.pgen.1009411

Berdan E, Blanckaert A, Butlin RK, Flatt T, Slotte T, Wielstra B. 2021. Supergene degeneration opposes polymorphism: The curious case of balanced lethals. bioRxiv. doi:10.1101/2021.11.27.470204

Berdan EL, Blanckaert A, Slotte T, Suh A, Westram AM, Fragata I. Unboxing mutations: Connecting mutation types with evolutionary consequences, Molecular Ecology, 2021, doi:10.1111/mec.15936

Berdan EL, Fuller RC, Kozak GM. Genomic landscape of reproductive isolation in Lucania killifish: The role of sex loci and salinity. Journal of Evolutionary Biology, 2021, 34 (1): 157-174. doi:10.1111/jeb.13725

Berdan EL, Mérot C, Pavia H, Johannesson K, Wellenreuther M, Butlin RK. (2021), A large chromosomal inversion shapes gene expression in seaweed flies (Coelopa frigida). Evolution Letters. doi:10.1002/evl3.260

Blakeslee AMH, Whitman Miller A, Ruiz GM, Johannesson K, André C, Panova M. 2021. Population structure and phylogeography of two North Atlantic Littorina species with contrasting larval development. Marine Biology 168, 117. 

Bourlat SJ, Faust E, Wennhage H, Wikström A, Rigby K, Vigo M, Kraly P, Selander E, André C. Wrasse fishery on the Swedish West Coast: towards ecosystem-based management, ICES Journal of Marine Science, 2021;, fsaa249, doi:10.1093/icesjms/fsaa249

De Wit P, Svanberg L, Casties I, Eriksson SP, Sundell K, André C. Single nucleotide polymorphisms are suitable for assessing the success of restocking efforts of the European lobster (Homarus gammarus, L.) Conservation Genetics Resources, 2021, published online 27 August, doi:10.1007/s12686-021-01234-3 

Durland E, De Wit P, Meyer E, Langdon C. Larval development in the Pacific oyster and the impacts of ocean acidification: Differential genetic effects in wild and domesticated stocks. Evolutionary Applications. 2021, doi: 10.1111/eva.13289

Durland E, De Wit P and Langdon C. Temporally balanced selection during development of larval Pacific oysters (Crassostrea gigas) inherently preserves genetic diversity within offspring. Proceedings of the Royal Society of London, September 2021.

Eriksson M, Rafajlović M. The Effect of the Recombination Rate between Adaptive Loci on the Capacity of a Population to Expand Its Range. The American Naturalist, Volume 197, Number 5, May 2021. doi: 10.1086/713669

Faria R, Johannesson K, Stankowski S. Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology, 2021, 34 (1): 1-3. doi:10.1111/jeb.13756

Faust E, Jansson E, André C, Halvorsen KT, Dahle G, Knutsen H, Quintela M, Glover KA. (2021) Not that clean: aquaculture mediated translocation of cleaner fish has led to hybridization on the northern edge of the species’ range, Evolutionary Applications. doi:10.1111/eva.13220

Galindo J, Carvalho J, Sotelo G, Duvetorp M, Costa D, Kemppainen P, Panova M, Kaliontzopoulou A, Johannesson K, Faria R. Genetic and morphological divergence between Littorina fabalis ecotypes in Northern Europe. Journal of Evolutionary Biology, 2021, 34 (1): 97-113. doi:10.1111/jeb.13705

Green L, Apostolou A, Faust E, Palmqvist K, Behrens JW, Havenhand JN, Leder EH, Kvarnemo C. Ancestral Sperm Ecotypes Reveal Multiple Invasions of a Non-Native Fish in Northern Europe. Cells. 2021; 10(7):1743. 

Green L, Niemax J, Herrmann JP, Temming A,  Behrens JW, Havenhand JN, Leder E, Kvarnemo C. Sperm performance limits the reproduction of an invasive fish in novel salinities. Biodiversity Research (2021), doi:10.1111/ddi.13258

Gutiérrez-Valencia J, Hughes W, Berdan EL, Slotte T. The genomic architecture and evolutionary fates of supergenes, Genome Biology and Evolution, 2021;, evab057, doi:10.1093/gbe/evab057

Halvorsen KT, ...[Faust E]...[André C]...et al. Towards a sustainable fishery and use of cleaner fish in salmonid aquaculture - Challenges and opportunities. TemaNord 2021:545, ISSN 0908-6692, © Nordic Council of Ministers 2021, 117 pp.

Hattich GSI, Listmann L, Govaert L, Pansch C, Reusch TBH, Matthiessen B. 2021. Experimentally decomposing phytoplankton community change into ecological and evolutionary contributions. Functional Ecology, doi:10.1111/1365-2435.13923

Kinnby A, White JCB, Toth GB, Pavia H. Ocean acidification decreases grazing pressure but alters morphological structure in a dominant coastal seaweed, PLoS ONE, 2021. doi:10.1371/journal.pone.0245017

Koch EL, Morales H, Larsson J, Westram AM, Faria R, Lemmon AR, Lemmon EM, Johannesson K, Butlin RK. 2021. Genetic variation for adaptive traits is associated with polymorphic inversions in Littorina saxatilis. Evolution Letters 5:196-213.

Leder EH, André C, Le Moan A, Töpel M, Blomberg A, Havenhand JN,  Lindström K, Volckaert FAM, Kvarnemo C, Johannesson K, Svensson O. Post‐glacial establishment of locally adapted fish populations over a steep salinity gradient. Journal of Evolutionary Biology, 2021, 34 (1): 138-156. doi:10.1111/jeb.13668

Le Moan A, Bekkevold D, Hemmer-Hansen J. Evolution at two time frames: ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa). Heredity (2021). doi:10.1038/s41437-020-00389-3

Le Moan A, Roby C, Fraisse C, Daguin-Thiébaut C, Bierne N, Viard F. (2021). An introgression breakthrough left by an anthropogenic contact between two ascidians. Molecular Ecology 30(24) 6718-6732, doi:10.1111/mec.16189

Lindström K, Havenhand J, Leder E, Schöld S, Svensson O, Kvarnemo C. Sperm adaptation in relation to salinity in three goby species. Journal of Fish Biology.  2021, doi:10.1111/jfb.14749.

Maltseva AL, Varfolomeeva MA, Gafarova ER, Panova MAZ, Mikhailova NA, Granovitch AI. (2021) Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species. PLOS ONE 16(12): e0260792.

Mérot C, Berdan E, Cayuela H, Djambazian H, Ferchaud AL, Laporte M, Normandeau E, Ragoussis J, Wellenreuther M, Bernatchez L. Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly, Molecular Biology and Evolution, 2021; msab143,  doi:10.1093/molbev/msab143

Mileca LJM, Jormalainen V, Rugiua L, Pereyra RT, Rothäusler E, Havenhand J & De Wit PR. Double-edged sword of desalination: Decreased growth and increased grazing endanger range-margin Fucus populations. Journal of Experimental Marine Biology and Ecology,
https://doi.org/10.1016/j.jembe.2021.151666

Mukherjee  V, Lind U, St Onge RP, Blomberg A, Nygård Y. A CRISPR Interference Screen of Essential Genes Reveals that Proteasome Regulation Dictates Acetic Acid Tolerance in Saccharomyces cerevisiae. mSystems, July 2021.

Nunez JCB, Rong S, Ferranti DA, Damian-Serrano A, Neil KB, Glenner H, Elyanow RG, Brown BRP, Alm Rosenblad M, Blomberg A, Johannesson K, Rand DM. From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles. Molecular Ecology, 2021 May 6. doi: 10.1111/mec.15949. Epub ahead of print. PMID: 33960035.

Pinsky ML,  Eikeset AM, Helmerson C,  Bradbury IR,  Bentzen P, Morris C, Gondek-Wyrozemska AT, Tessand Baalsrud H, Servane Ono Brieuc M, Kjesbu OS,.Godiksen JA, Barth JMI, Matschiner M, Stenseth NC, Jakobsen KS, Jentoft S, Star B. Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic, Proceedings of the National Academy of Sciences, Apr 2021, 118 (15) e2025453118; DOI:10.1073/pnas.2025453118

Rafajlović M, Rambla J, Feder JL, Navarro A, Faria R. 2021. Inversions and genomic differentiation after secondary contact: When drift contributes to maintenance, not loss, of differentiation. Evolution 75: 1288-1303. doi: 10.1111/evo.14223

Ravinet M, Kume M, Ishikawa A, Kitano J. Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats. Journal of Evolutionary Biology, 2021, 34 (1): 114-127. doi:10.1111/jeb.13664

Vajedsamiei J, Melzner F, Raatz M, Kiko R, Khosravi M, Pansch C. (2021) Simultaneous recording of filtration and respiration in marine organisms in response to short-term environmental variability. Limnology and Oceanography – Methods. doi:10.1002/lom3.10414

Vajedsamiei J, Melzner F, Raatz M, Moron S, Pansch C. (2021) Cyclic thermal fluctuations can be burden or relief for an ectotherm depending on fluctuations’ average and amplitude. Functional Ecology, doi: 10.1111/1365-2435.13889

Vajedsamiei J, Wahl M, Schmidt A, Yazdanpanahan M,  Pansch C. (2021) The higher the needs, the lower the tolerance: Extreme events may select ectotherm recruits with lower metabolic demand and heat sensitivity. Frontiers in Marine Science 8:660427, doi:10.3389/fmars.2021.660427

Westram AM, Faria R, Johannesson K, Butlin RK. 2021. Using replicate hybrid zones to understand the genomic basis of adaptive divergence. Molecular Ecology 30:3797-3814 

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Adrian-Kalchhauser I, Sultan SE, Shama LNS, Spence-Jones H, Tiso S, Keller Valsecchi CI, Weissing FJ. Understanding 'Non-genetic' Inheritance: Insights from Molecular-Evolutionary Crosstalk. Trends in Ecology and Evolution, 2020, doi:10.1016/j.tree.2020.08.011

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Bisschop G, Setter D, Rafajlović M, Baird SJE, Lohse K. The impact of global selection on local adaptation and reproductive isolation. 2020. Philosophical transactions of the Royal Society B, Biological Sciences, doi:10.1098/rstb.2019.0531 

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Costa D, Sotelo G, Kaliontzopoulou A, Carvalho J, Butlin R, Hollander J, Faria R. Hybridization patterns between two marine snails, Littorina fabalis and L. obtusata. Ecology and Evolution, January 2020. doi:10.1002/ece3.5943

De Wit P, Jonsson PR, Pereyra RT, Panova M, André C, Johannesson K. Spatial genetic structure in a crustacean herbivore highlights the need for local considerations in Baltic Sea biodiversity management. Evolutionary Applications, 2020. doi:10.1111/eva.12914

Green L, Niemax J, Herrmann JP, Temming A, Kvarnemo C. Alternative reproductive tactics are associated with sperm performance in invasive round goby from two different salinity environments. Ecology and Evolution, 2020, Volume 10, Issue 18. https://doi.org/10.1002/ece3.6657

Jahnke M, Moksnes PO, Olsen JL, Serra Serra N, Nilsson Jacobi M, Kuusemäe K, Corell H, Jonsson PR. Integrating genetics, biophysical, and demographic insights identifies critical sites for seagrass conservation. Ecological Applications, 2020. doi:10.1002/eap.2121

Johannesson K, Le Moan A, Perini S, André C. A Darwinian Laboratory of Multiple Contact Zones, 2020, Trends in Ecology & Evolution, https://doi.org/10.1016/j.tree.2020.07.015

Jonsson PR, Moksnes PO, Corell H, Bonsdorff E, Nilsson Jacobi M. Ecological coherence of Marine Protected Areas: New tools applied to the Baltic Sea network. Aquatic conservation – Marine and Freshwater Ecosystems, 2020; 1-18. doi:10.1002/aqc.3286

Kinnby A, Jonsson PR, Ortega-Martinez O, Töpel M, Pavia H, Pereyra RT and Johannesson K. (2020) Combining an Ecological Experiment and a Genome Scan Show Idiosyncratic Responses to Salinity Stress in Local Populations of a Seaweed. Frontiers of Marine Sciences, 7:470. doi: 10.3389/fmars.2020.00470

Laikre L, Hoban S, Bruford MW, Segelbacher G, Allendorf FW, Gajardo G, González Rodríguez A, Hedrick PW, Heuertz M, Hohenlohe PA, Jaffé R, Johannesson K, Liggins L, MacDonald AJ, OrozcoterWengel P, Reusch TBH, Rodriguez-Correa H, Russo, IRM, Ryman N, Vernesi C. 2020. Post-2020 goals overlook genetic diversity. Science 367:1083-1084.

Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. A developmentally descriptive method for quantifying shape in gastropod shells. Journal of the Royal Society Interface. 2020, Vol 17. doi:10.1098/rsif.2019.0721

Lutz E, Hirsch PE, Bussmann K, Wiegleb J, Jermann HP, Muller R, Burkhardt-Holm P, Adrian-Kalchhauser I. Predation on native fish eggs by invasive round goby revealed by species‐specific gut content DNA analyses. Aquatic Conservation: Marine and Freshwater Ecosystems, 2020; 30: 1566– 1577.

Molin M, Logg K, Bodvard, K, Peeters K, Forsmark A, Roger F, Jörhov A, Mishra N, Billod JM, Amir S, Andersson M, Eriksson LA, Warringer J, Käll M, Blomberg A. Protein kinase A controls yeast growth in visible light. BMC Biology 18, 168 (2020). https://doi.org/10.1186/s12915-020-00867-4

Nunez JCB, Flight PA, Neil KB, Rong S, Eriksson LA, Ferranti DA, Rosenblad MA, Blomberg A, Rand DM. Footprints of natural selection at the mannose-6-phosphate isomerase locus in barnacles. Proceedings of the National Academy of Sciences Feb 2020, 201918232; DOI: 10.1073/pnas.1918232117

Nunez JCB, Rong S, Damian-Serrano A, Burley JT,  Elyanow RG, Ferranti DA, Neil KB, Glenner H, Rosenblad MA, Blomberg A, Johannesson K, Rand DM. Ecological load and balancing selection in circumboreal barnacles, 2020, Molecular Biology and Evolution, DOI:10.1093/molbev/msaa227

Obst, M, Exter K, et al. A Marine Biodiversity Observation Network for Genetic Monitoring of Hard-Bottom Communities (ARMS-MBON). Frontiers in Marine Sciences,  2020, doi:10.3389/fmars.2020.572680 

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Rugiu L, De Wit P, Kostian I & Jormalainen V. Climate change driven hyposalinity as a selective agent in the littoral mesoherbivore Idotea balthica. Published in Marine Environmental Research, Volume 163, 2021 (online November 2020).

Rugiu L, Panova M, Pereyra RT, Jormalainen V. Gene regulatory response to hyposalinity in the brown seaweed Fucus vesiculosus. BMC Genomics 21, 42 (2020).
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Ruocco M, Ambrosino L, Jahnke M, Chiusano ML, Barrote I, Procaccini G, Silva J, Dattolo E. m⁶A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms. International Journal of Molecular Sciences, 2020, 21(20), 7508; https://doi.org/10.3390/ijms21207508 (registering DOI)

Saha M, Barboza FR, Somerfield PJ, Al-Janabi B, Beck M, Brakel J, Ito M, Pansch C, Nascimento-Schulze JC, Jakobsson-Thor S, Weinberger F, Sawall Y. (2020). Response of foundation macrophytes to near‐natural simulated marine heatwaves. Global Change Biology 2020; 26: 417– 430. doi:10.1111/gcb.14801

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Sotelo G, Duvetorp M, Costa D,  Panova M, Johannesson K. Phylogeographic history of flat periwinkles, Littorina fabalis and L. obtusata. BMC Evolutionary Biology 20, 23 (2020). https://doi.org/10.1186/s12862-019-1561-6

Stankowski S, Westram AM, Zagrodzka ZB, Eyres I, Broquet T, Johannesson K, Butlin RK. 2020 The evolution of strong reproductive isolation between sympatric intertidal snails. Philosophical Transactions of the Royal Society B, 375:20190545.

Stenow R, Olofsson M, Robertson EK, Kourtchenko O, Whitehouse MJ, Ploug H, Godhe A. (2020) Resting stages of Skeletonema marinoi assimilate nitrogen from the ambient environment under dark, anoxic conditions. Journal of Phycology, doi:10.1111/jpy.12975

Vandamme S, Raeymaekers JAM,  Maes GE,  Cottenie K,  Calboli FCF, Diopere E, Volckaert FAM. Reconciling seascape genetics and fisheries science in three codistributed flatfishes. Evolutionary Applications, 2020. https://doi.org/10.1111/eva.13139

Westram AM, Faria R, Butlin R, Johannesson K. (May 2020) Inversions and Evolution. In: eLS. John Wiley & Sons, Ltd: Chichester. doi: 10.1002/9780470015902.a0029007

Zrimec, J, Börlin CS, Buric F, Muhammad AS, Chen R, Siewers V, Verendel V, Nielsen J, Töpel M, Zelezniak A.  Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. Nature Communication 11, 6141 (2020), doi:10.1038/s41467-020-19921-4

Abramova A, Alm Rosenblad M, Blomberg A, Larsson TA. Sensory receptor repertoire in cyprid antennules of the barnacle Balanus improvisus. PLoS One. 2019 May 2;14(5):e0216294. doi: 10.1371/journal.pone.0216294. eCollection 2019

Abramova A, Lind U, Blomberg A, Rosenblad MA. The complex barnacle perfume: identification of waterborne pheromone homologues in Balanus improvisus and their differential expression during settlement. Biofouling. 2019 May 30:1-13. doi: 10.1080/08927014.2019.1602123. [Epub ahead of print]

Adrian-Kalchhauser I, Blomberg A, Larsson T, Musilova Z, Peart CR, Pippel M, Solbakken MH, Suurväli J, Walser J-C, Wilson JY, Rosenblad MA, Burguera D, Gutnik S, Michiels N, Töpel M, Pankov K, Schloissnig S, Winkler S. (2019) Evolved for success in novel environments: The round goby genome. BioRxiv 708974. doi:10.1101/708974

Andermann T, Fernandes AM, Olsson U, Töpel M, Pfeil B, Oxelman B, Aleixo A, Faircloth BC,  Antonelli A. Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements, Systematic Biology, Volume 68, Issue 1, 1 January 2019, Pages 32–46, https://doi.org/10.1093/sysbio/syy039

Andersson B, Shen C, Cantrell M, Dandy DS, Peers G. The Fluctuating Cell-Specific Light Environment and Its Effects on Cyanobacterial Physiology. Plant Physiology, October 2019, Vol. 181, pp. 547–564. DOI: https://doi.org/10.1104/pp.19.00480

André C, Barth JMB, Svenson A, Jonsson P, Jentoft S, Knutsen H, Svedäng H. 2019. Response to comments by Cardinale et al. on "Local cod (Gadus morhua) revealed by egg surveys and population genetic analysis after longstanding depletion on the Swedish Skagerrak coast" by Svedäng et al., ICES Journal of Marine Science.

Barboza FR, Kotta J, Weinberger F, Jormalainen V, Kraufvelin P, Molis M, Schubert H, Pavia H, Nylund GM, Kautsky L, Schagerström E, Rickert E, Saha M, Fredriksen S, Martin G, Torn K, Ruuskanen A, Wahl M. Geographic variation in fitness‐related traits of the bladderwrack Fucus vesiculosus along the Baltic Sea‐North Sea salinity gradient. Ecology and Evolution. https://doi.org/10.1002/ece3.5470

Barth JMI, Villegas-Ríos D, Freitas C, Moland E, Star B, André C, Knutsen H, Bradbury I, Dierking J, Petereit C, Righton D, Metcalfe J, Jakobsen KS, Olsen EM, Jentoft S. 2019. Disentangling structural genomic and behavioral barriers in a sea of connectivity. Molecular Ecology online. https://doi.org/10.1111/mec.15010

Berdan E, Enge S, Nylund GM, Wellenreuther M, Martens GA, Pavia H. Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly Coelopa frigida. 2019. Ecology and Evolution. https://doi.org/10.1002/ece3.5690

Blankers T, Berdan EL, Hennig RM, Mayer F. Physical linkage and mate preference generate linkage disequilibrium for behavioral isolation in two parapatric crickets. Evolution, 2019, https://doi.org/10.1111/evo.13706

Blom EL, Kvarnemo C, Dekhla I, Schöld S, Andersson MH, Svensson O, Amorim MCP. Continuous but not intermittent noise has a negative impact on mating success in a marine fish with paternal care. Scientific Reports, volume 9, Article number: 5494 (2019), doi:10.1038/s41598-019-41786-x

Elhasi T, Blomberg A. (2019) Integrins in disguise - mechanosensors in Saccharomyces cerevisiae as functional integrin-analogues. Microbial Cell, 6:335 

Falkenberg LJ, Styan CA, Havenhand JN. Sperm motility of oysters from distinct populations differs in response to ocean acidification and freshening. Scientific Reports, Volume 9, Article number: 7970 (2019) doi:10.1038/s41598-019-44321-0

Faria R, Chaube P, Morales HE, Larsson T, Lemmon AR, Lemmon EM, Rafajlović M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK. Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology 2019 Mar;28(6):1375-1393. doi: 10.1111/mec.14972. Epub 2019 Feb 25.

Faria R, Johannesson K, Butlin R, Westram A. Evolving inversions. Trends in Ecology and Evolution, 2019, https://doi.org/10.1016/j.tree.2018.12.005 

Ferrante MI, Entrambasaguas L, Johansson M, Töpel M, Kremp A, Montresor M, Godhe A. (2019) Exploring Molecular Signs of Sex in the Marine Diatom Skeletonema marinoi. Genes 10(7):494. doi:10.3390/genes10070494

Franzén D, Infantes E, Gröndahl F (2019) Beach-cast as biofertiliser in the Baltic Sea region-potential limitations due to cadmium-content. Ocean and Coastal Management, 160:20-26.

Green L, Havenhand NH, Kvarnemo L. (2019) Evidence of rapid adaptive change to local salinity in the sperm of an invasive fish. Evolutionary Applications. DOI: 10.1111/eva.12859

Green L,  Kvarnemo C. Sperm-duct gland content increases sperm velocity in the sand goby. Biology Open 2019 8: bio037994 doi: 10.1242/bio.037994 Published 27 March 2019

Gutnik S, Walser JC, Adrian-Kalchhauser I. (2019) Long-read sequencing of benthophilinae mitochondrial genomes reveals the origins of round goby mitogenome re-arrangements. Mitochondrial DNA Part B, 4:1, 408-409, DOI: 10.1080/23802359.2018.1547133

Hudson J, Johannesson K, McQuaid CD, Rius M. 2019. Secondary contacts and genetic admixture shape colonisation by an amphiatlantic epibenthic invertebrate. Evolutionary Applications. doi:10.1111/eva.12893

Hurd CL, J Beardall, S Comeau, CE Cornwall, JN Havenhand, P Munday, L Parker, JA Raven, CM McGraw (2019)  Ocean acidification as a multiple driver: how interactions between changing seawater carbonate parameters affect marine life. Marine & Freshwater Research. doi: 10.1071/MF19267 

Jahnke M, Gullström M, Larsson J, Asplund ME, Mgeleka S, Silas MO, Hoamby A, Mahafina J, Nordlund LM. (2019). Population genetic structure and connectivity of the seagrass Thalassia hemprichii in the Western Indian Ocean is influenced by predominant ocean currents, Ecology and Evolution,https://doi.org/10.5061/dryad.0hn97r5.

Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. 2019. Is embryo abortion a postzygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology. doi:10.1111/jeb.13570 

Johansson E, Legrand C, Björnerås C, Godhe A, Mazur-Marzec H, Säll T, Rengefors K. High Diversity of Microcystin Chemotypes within a Summer Bloom of the Cyanobacterium Microcystis botrys. Toxins 2019, 11, 698

Johansson ON, Pinder MIM, Ohlsson F, Egardt J, Töpel M, Clarke AK. (2019) Friends with Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi. Frontiers in Microbiology 10:1828. doi:10.3389/fmicb.2019.01828

Johansson ON, Töpel M, Pinder MIM, Kourtchenko O, Blomberg A, Godhe A, Clarke AK. Skeletonema marinoi as a new genetic model for marine chain-forming diatoms. Scientific Reports volume 9, Article number: 5391 (2019) doi:10.1038/s41598-019-41085-5

Kinnby A, Pereyra RT, Havenhand JN, De Wit P, Jonsson PR, Pavia H, Johannesson K. Factors affecting formation of adventitious branches in the seaweeds Fucus vesiculosus and F. radicans. 2019, BMC Ecology 19(1)
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Kolora R, Tech M, Weigert A, Saffari A, Kehr S, Costa M, Spröer C, Indrischek H, Chintalapati M, Doose G, Bunk B, Overmann J, Lohse K, Bleidorn C, Henle K, Nowick K, Faria R, Stadler P, Schlegel M. Divergent evolution in the genomes of closely­ related lacertids, Lacerta viridis and L. bilineata and implications for speciation. GigaScience, doi.org/10.1093/gigascience/giy160

Kotta J, Vanhatalo J, Jänes H, Orav-Kotta H, Rugiu L, Jormalainen V, Bobsien I, Viitasalo M, Virtanen E, Nystrom Sandman A, Isaeus M, Leidenberger S, Jonsson P, Johannesson K. 2019. Integrating experimental and distribution data to predict future species patterns. Scientific Reports. doi: 10.1038/s41598-018-38416-3

Marin B, Bouma TJ, Infantes E. (2019) Role of eelgrass on bed-load transport and sediment resuspension under oscillatory flow. Limnology and Oceanography. DOI: 10.1002/LNO.11312

Mattingsdal M, Jorde PE, Knutsen H, Jentoft S, Stenseth NC, Sodeland M, Robalo JI, Hansen MM, André C, Blanco Gonzalez E. 2019. Demographic history, not adaptation, has shaped the strongly differentiated corkwing wrasse populations in Northern Europe. Molecular Ecology. doi:0.1111/mec.15310

Meysick L, Infantes E, Boström C. (2019) The influence of hydrodynamics and ecosystem engineers on eelgrass seed trapping. PLoS ONE 14(9): e0222020

Morales H, Faria R, Johannesson K, Larsson T, Panova M, Westram AM, Butlin RK. 2019. Genomic architecture of parallel ecological divergence: beyond a single environmental contrast. Science Advances, Vol. 5, no. 12, eaav9963, doi: 10.1126/sciadv.aav9963 

Pajusalu L, Dupont S, Lainela S, Martin G. Ocean acidification research in Estonia – Challenges and opportunities. Proceedings of the Estonian Academy of Sciences. 2019, 68, 1, 22–31. doi:10.3176/proc.2019.1.05

Pansch C, Claas Hiebenthal C. A new mesocosm system to study the effects of environmental variability on marine species and communities. Limnology and Oceanography: Methods, 2019, doi: 10.1002/lom3.10306

Pinder MIM, Johansson ON, Almstedt A, Kourtchenko O, Clarke AK, Godhe A, Töpel M. (2019) Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema marinoi. Journal of Genomics 7:46. doi:10.7150/jgen.35061

Sætre GP, Ravinet M. Evolutionary Genetics, Concepts, Analysis, and Practice. Oxford University Press, 2019, ISBN: 9780198830924

Stumpp M, Dupont S, Hu MY. (2018) Chapter 16: Measurement of feeding rates, respiration and pH regulatory processes in the light of ocean acidification research. In Methods in Cell Biology - Echinoderms Part A., 2019 (150), pp 391-409. doi:10.1016/bs.mcb.2018.11.017

Sundell K, Wrange A-L, Jonsson, PR, Blomberg A. 2019. Osmoregulation in barnacles: An evolutionary perspective of potential mechanisms and future research directions. Frontiers in Physiology. doi.org/10.3389/fphys.2019.00877

Svedäng H, Barth JMI, Svenson A, Jonsson P, Jentoft S, Knutsen H, André C. Local cod (Gadus morhua) revealed by egg surveys and population genetic analysis after longstanding depletion on the Swedish Skagerrak coast, ICES Journal of Marine Science (2019) 76(2), 418-429, https://doi.org/10.1093/icesjms/fsy166

Turner LM, Havenhand JN, Alsterberg C, Turner AD, Girisha SK, Rai A, Venugopal MN, Karunasagar I, Godhe A. Toxic Algae Silence Physiological Responses to Multiple Climate Drivers in a Tropical Marine Food Chain. Frontiers in Physiology, 04 April 2019, doi:10.3389/fphys.2019.00373

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Clarke AK, Godhe A. Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi. Journal of Genomics 2019; 7:7-10. doi:10.7150/jgen.30559.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK. (2019) Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom Host. Journal of Genomics 7:60-63. doi:10.7150/jgen.39039

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK. Genome Sequence of Arenibacter algicola Strain SMS7, Found in Association with the Marine Diatom Skeletonema marinoi. Microbiology Resource Announcments, Jan 2019, 8 (2) e01461-18; DOI: 10.1128/MRA.01461-18

van Riemsdijk I, Butlin RK, Wielstra B, Arntzen JW. 2019. Testing an hypothesis of hybrid zone movement for toads in France. Molecular Ecology, online early. doi:10.1111/mec.15005

Weist P, Schade FM, Damerau M, Barth JMI, Dierking J, André C, Petereit C, Reusch T, Jentoft S, Hanel R, Krumme U.(2019) Assessing SNP-markers to study population mixing and ecological adaptation in Baltic cod. PLoS ONE 14(6): e0218127. https://doi.org/10.1371/journal.pone.0218127

Wellenreuther M, Mérot C, Berdan E, Bernatchez L. Going beyond SNPs: the role of structural genomic variants in adaptive evolution and species diversification. Molecular Ecology. First published: 04 March 2019, doi:10.1111/mec.15066

Wielstra B, McCartney-Melstad E Arntzen JW, Butlin RK, Shaffer HB. 2019. Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle. Molecular Phylogenetics and Evolution, online early. doi:10.1016/j.ympev.2018.12.032

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Adrian-Kalchhauser I, Walser JC, Schwaiger M, Burkhardt-Holm P. RNA sequencing of early round goby embryos reveals that maternal experiences can shape the maternal RNA contribution in a wild vertebrate. BMC Evolutionary Biology, BMC series – open, inclusive and trusted 2018 18:34

Amato A, Sabatino V, Nylund GM, Bergkvist J, Basu S, Andersson MX, Sanges R, Godhe A, Kiørboe T, Selander E, Ferrante MI. Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi. The ISME Journal 2018, doi:10.1038/s41396-018-0094-0

Arnberg M, Calosi P, Spicer J, Taban I, Bamber S, Westerlund S, Vingen S, Baussant T, Bechmann R & Dupont S. Effects of oil and global environmental drivers on two keystone marine invertebrates. Scientific Reports. (2018) 8: 17380. doi:10.1038/s41598-018-35623-w

Asnicar D, Ašmonaitė G, Birgersson L, Kvarnemo C, Svensson O, Sturve J. (2018). Sand goby—an ecologically relevant species for behavioural ecotoxicology. Fishes 3: 13, doi:10.3390/fishes3010013.

Bausch AR, Gallego MA, Harianto J, Thibodeau P, Bednaršek N, Havenhand JN, Klinger T. Influence of bacteria on shell dissolution in dead gastropod larvae and adult Limacina helicina pteropods under ocean acidification conditions. Marine Biology (2018) 165: 40. https://doi.org/10.1007/s00227-018-3293-3

Bergin C, Wentrup C, Brewig N, Blazejak A, Erséus C, Giere O, Schmid M, De Wit P, Dubilier N.Acquisition of a novel sulfur-oxidizing symbiont in the gutless marine worm Inanidrilus exumae. Applied and Environmental Microbiology (2018) 84: e02267-17. doi:10.1128/AEM.02267-17

Blankers T, Vilaça ST, Waurick I, Gray DA, Hennig RM, Mazzoni CJ, Mayer F,  Berdan EL. (2018), Demography and selection shape transcriptomic divergence in field crickets. Evolution. Accepted Author Manuscript. doi:10.1111/evo.13435

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Boyd PW, Collins S, Dupont S, Fabricius K, Gattuso JP, Havenhand J, Hutchins DA, Riebesell U, Rintoul MS, Vichi M, Biswas H, Ciotti A, Gao K, Gehlen M, Hurd CL, Kurihara H, McGraw CM, Navarro J, Nilsson GE, Passow U, Pörtner HO.  Experimental strategies to assess the biological ramifications of multiple drivers of global ocean change – a review. Global Change Biology, doi:10.1111/gcb.14102

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Dahl M, Infantes E, Clevesjö R, Linderholm HW, Björk M, Gullström M. Increased current flow enhances the risk of organic carbon loss from Zostera marina sediments: Insights from a flume experiment. Limnology and Oceanography (2018) 63(6): 2793-2805. 

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De Wit P, Yamada K, Panova M, André C, Johannesson K. Diet-dependent gene expression highlights the importance of Cytochrome P450 in detoxification of algal secondary metabolites in a marine isopod. Scientific Reports, volume 8, Article number: 16824 (2018)

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Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes PO, Star B, Stenseth NC, Svedäng H, Jentoft S, André C. Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Molecular Ecology 2017;00:1–15. https://doi.org/10.1111/mec.14207

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Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA. Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution (2017) doi: 10.1093/gbe/evw272

Star B, Boessenkool S, Gondek AT, Nikulina EA, Hufthammer AK, Pampoulie C, Knutsen H, André C, Nistelberger HM, Dierking J, Petereit C, Heinrich D, Jakobsen KS, Stenseth NC, Jentoft S, Barrett JH. Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany. PNAS 2017 : 1710186114v1-201710186.

Sui Y, Liu Y, Zhao X, Dupont S, Hu M, Wu F, Huang X, Li J, Lu W, Wang Y. Defense Responses to Short-term Hypoxia and Seawater Acidification in the Thick Shell Mussel Mytilus coruscus. Frontiers in Physiology, 2017, 8: Article 145. doi: 10.3389/fphys.2017.00145

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Thor P, Bailey A, Dupont S, Calosi P, Søreide JE, De Wit P, Guscelli E, Loubet-Sartrou L, Deichmann IM, Candee MM, Svensen C, King AL, Bellerby RGJ. Contrasting physiological responses to future ocean acidification among Arctic copepod populations. Global Change Biology. doi:10.1111/gcb.13870

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Töpel M, Zizka A, Calio MF, Scharn R, Silvestro D, Antonelli A. SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution, Systematic Biology,Volume 66, Issue 2, 1 March 2017, Pages 145–151, https://doi.org/10.1093/sysbio/syw064

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Wu F, Wang T, Cui S, Xie Z, Dupont S, Zeng J, Gu H, Kong H, Hu M, Lu W, Wang Y. Effects of seawater pH and temperature on foraging behavior of the Japanese stone crab Charybdis japonica. Marine Pollution Bulletin, 2017, Available online 5 May 2017.
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Bourlat SJ , Haenel Q, Finnman J, Leray M. Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR Method. Marine Genomics, 2016. Volume 1452 of the series Methods in Molecular Biology pp 197-207

Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjöqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C.  Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom. Frontiers in Microbiology (2016) 7:517. doi: 10.3389/fmicb.2016.00517

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Carey N, Dupont S, Sigwart JD. Sea Hare Aplysia punctata (Mollusca: Gastropoda) Can Maintain Shell Calcification under Extreme Ocean Acidification. The Biological Bulletin 2016 231:2, 142-151

Carvalho J, Sotelo G, Galindo J, Faria R. (2016). Genetic characterization of flat periwinkles (Littorinidae) from the Iberian Peninsula reveals interspecific hybridization and different degrees of differentiation. Biological Journal of the Linnean Society 118, 503-¬519.

Chan KYK, Grünbaum D, Arnberg M, Dupont S. Impacts of ocean acidification on survival, growth, and swimming
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De Wit P.  SNP Discovery Using Next Generation Transcriptomic Sequencing. Marine Genomics, 2016. Volume 1452 of the series Methods in Molecular Biology pp 81-95.

De Wit P, Dupont S, Thor P. Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepod Pseudocalanus acuspes. Evolutionary Applications, (2016) 9: 1112–1123. 

Dylus DV, Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P. Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. EvoDevo2016 7:2,
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Frommel AY, Margulies D, Wexler JB, Stein MS, Scholey VP, Williamson JE, Bromhead D, Nicol S, Havenhand JN. Ocean acidification has lethal and sub-lethal effects on larval development of yellowfin tuna, Thunnus albacares. Journal of Experimental Marine Biology and Ecology,
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Georgian SE, Dupont S, Kurman M, Butle, A, Strömberg  SM, Larsson AI, Cordes EE. (2016), Biogeographic variability in the physiological response of the cold-water coral Lophelia pertusa to ocean acidification. Marine Ecology
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Hu MY, Michael K, Kreiss CM, Stumpp M, Dupont S, Tseng Y and Lucassen M. Temperature modulates the effects of ocean acidification on intestinal ion transport in Atlantic cod, Gadus morhua. Frontiers in Physiology (2016) 7:198. doi: 10.3389/fphys.2016.00198

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Jager T, Ravagnan E, Dupont S. Near-future ocean acidification impacts maintenance costs in sea-urchin larvae: Identification of stress factors and tipping points using a DEB modelling approach. Journal of Experimental Marine Biology and Ecology (2016) 474:11-17

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Braga Goncalves I, Ahnesjö I, Kvarnemo C. (2015). The evolutionary puzzle of egg size, oxygenation and parental care in aquatic environments. Proceedings of the Royal Society B. 282: 20150690. doi: 10.1098/rspb.2015.0690.

Braga Goncalves I, Ahnesjö I, Kvarnemo C. (2015). Embryo oxygenation in pipefish brood pouches: novel insights. Journal of Experimental Biology 218: 1639-1646. doi: 10.1242/ jeb.120907.

Breitburg DL, Salisbury J, Bernhard JM, Cai WJ, Dupont S, Doney SC, Kroeker KJ, Levin LA, Long WC, Milke LM, Miller SH, Phelan B, Passow U, Seibel BA, Todgham AE, Tarrant AM.   And on top of all that… Coping with ocean acidification in the midst of many stressors. Oceanography 2015.28(2):48–61,
http://dx.doi.org/10.5670/oceanog.2015.31.

Bromhead D, Scholey V, Nicol S, Margulies D, Wexler J, Stein M, Hoyle S, Lennert-Cody C, Williamson J, Havenhand J, Ilyina T, Lehodey P. The potential impact of ocean acidification upon eggs and larvae of yellowfin tuna (Thunnus albacares). Deep-Sea Research II (2015), http://dx.doi.org/10.1016/j.dsr2.2014.03.019

Carvalho J, Pereira C, Sotelo G, Costa D, Galindo J, Faria R. (2015) De novo isolation of 17 microsatellite loci for flat periwinkles (Littorina fabalis and L. obtusata) and their application for species discrimination and hybridization studies. Journal of Molluscan Studies 21, 421-425.

Chan KYK, García E, Dupont S. Acidification reduced growth rate but not swimming speed of larval sea urchins. Scientific reports, 5 : 9764, doi: 10.1038/srep09764

Cortesi F, et al. Phenotypic Plasticity Confers Multiple Fitness Benefits to a Mimic. Current Biology (2015), doi:10.1016/j.cub.2015.02.013

Delroisse J, Ortega-Martinez O, Dupont S, Mallefet J, Flammang P. De novo transcriptome of the European brittle star Amphiura filiformis pluteus larvae. Marine Genomics (2015)
doi:10.1016/j.margen.2015.05.014

De Wit P, Dupont S, Thor P. Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepod Pseudocalanus acuspes. Evolutionary applications. doi: 10.1111/eva.1233

De Wit P, Pespeni MH, Palumbi SR. SNP genotyping and population genomics from expressed sequences –current advances and future possibilities. Molecular Ecology (2015), doi: 10.1111/mec.13165

Dupont S, Puncher G, Calosi P. Bird is the word – on the importance of ethical and effective scientific communication. Journal of the Marine Biological Association of the United Kingdom (2015), doi: http://dx.doi.org/10.1017/S0025315415000193

Dupuy C, Galland C, Pichereau V, Sanchez W, Riso R, Labonne M, Amara R, Charrier G, Fournier M, Laroche J. (2015) Assessment of the European flounder responses to chemical stress in the English Channel, considering biomarkers and life history traits. Marine Pollution Bulletin 95, 634-645. doi:10.1016/j.marpolbul.2014.11.033

Ellis CD, Hodgson DJ, André C, Sørdalen TK, Knutsen H, Griffiths AGF (2015) Genotype Reconstruction of Paternity in European Lobsters (Homarus gammarus). PLoS ONE 10(11): e0139585. doi:10.1371/journal.pone.0139585

Fauville G, Dupont S, von Thun S, Lundin J. Can Facebook be used to increase scientific literacy? A case study of the Monterey Bay Aquarium Research Institute Facebook
page and ocean literacy, Computers & Education (2015), doi: 10.1016/j.compedu.2014.11.003.

Gabre JL, Martinez P, Nilsson Sköld H,Ortega-Martinez O, Abril JF. The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata. Marine Genomics (2015) doi:10.1016/j.margen.2015.07.010

García E, Hernández JC, Clemente S, Cohen-Rengifo M, Hernández CA, Dupont S. Robustness of Paracentrotus lividus larval and post‑larval development to pH levels projected for the turn of the century. Marine Biology, 
doi 10.1007/s00227-015-2731-8

Garcia-Cisneros A, Pérez-Portela R, Almroth BC, Degerman S, Palacín C, and Nilsson Sköld H. Long telomeres are associated with clonality in wild populations of the fissiparous starfish Coscinasterias tenuispina. Heredity , (20 May 2015) | doi:10.1038/hdy.2015.43

Gohli J, Leder EH, Garcia-del-Rey E, Johannessen LE, Johnsen A, Laskemoen T, Popp M, Lifjeld JT. The evolutionary history of Afrocanarian blue tits inferred from genome-wide SNPs. Molecular Ecology. 2015, 24(1) 180-191, 
doi: 10.1111/mec.13008

Hall-Spencer JM, Thorndyke M, Dupont S. Impact of Ocean Acidification on Marine Organisms—Unifying Principles and New Paradigms. Water 2015, 7, 5592-5598.

Hu M, Li L, Sui Y, Li J, Wang Y, Lu W, Dupont S. Effect of pH and temperature on antioxidant responses of the thick shell mussel Mytilus coruscus. Fish and Shellfish Immunology (2015) 46:2, 573-583

Hurd CL, Cornwall CR, Dupont S, Gattuso JP, Hoegh-Guldberg O, Gao, Lagos NA. Correspondence - Laboratory seawater studies are justified. Nature (2015) 525: 187.

Jansson A, Norkko J, Dupont S, Norkko A. Growth and survival in a changing environment: Combined effects of moderate hypoxia and low pH on juvenile bivalve Macoma balthica. Journal of Sea Research (2015), doi:10.1016/j.seares.2015.04.006

Jin P, Wang T, Liu N, Dupont S, Beardall J, Boyd PW, Riebesell U, Gao K. Ocean acidification increases the accumulation of toxic phenolic compounds across trophic levels. Nature Communications, 6:8714 doi: 10.1038/ncomms9714 (2015)

Johannesson K. What can be learnt from a snail?. Evolutionary Applications. (2015), doi: 10.1111/eva.12277

Jorde PE, Søvik G, Westgaard JI, Albretsen J, André C, Hvingel C, Johansen T, Sandvik AD, Kingsley M, Jørstad KE. Genetically distinct populations of northern shrimp, Pandalus borealis, in the North Atlantic: adaptation to different temperatures as an isolation factor. Molecular Ecology
Volume 24, Issue 8, pages 1742–1757, April 2015

Knutsen H, Jorde PE, Gonzalez EB, Eigaard OR,
Pereyra RT, Sannæs H, Dahl M, André C, Søvik G. Does population genetic structure support present management
regulations of the northern shrimp (Pandalus borealis)
in Skagerrak and the North Sea? ICES Journal of Marine Science, doi: 10.1093/icesjms/fsu204

Kreiss CM, Michael K, Lucassen M, Jutfelt F, Motyka R, Dupont S, Pörtner HO. Ocean warming and acidification modulate energy budget and gill ion regulatory mechanisms in Atlantic cod (Gadus morhua). Journal of Comparative Physiology B (2015) doi: 10.1007/s00360-015-0923-7

Lane A, Campanati C, Dupont S, Thiyagarajan V. Trans-generational responses to low pH depend on parental gender in a calcifying tubeworm. Science Report. 2015 Jun 3;5:10847. doi: 10.1038/srep10847.

Lehtonen TK, Kvarnemo C. (2015a). Infections may select for filial cannibalism by impacting egg survival in interactions with water salinity and egg density. Oecologia. doi: 10.1007/s00442-015-3246-1

Lehtonen TK, Kvarnemo C. (2015b). Odour cues from suitors' nests determine mating success in a fish. Biology Letters, 11, 20150021. doi: 10.1098/rsbl.2015.0021

Leidenberger S, Obst M, Robert Kulawik R, Stelzer K, Heyer K, Alex Hardisty A, Bourlat SJ. Evaluating the potential of ecological niche modelling as a component in marine non-indigenous species risk assessments. Marine Pollution Bulletin (2015). doi:10.1016/j.marpolbul.2015.04.033

Li L, Lu W, Sui Y, Wang Y, Yasmeen Gul Y, Dupont S. Conflicting Effects of Predator Cue and Ocean Acidification on the Mussel Mytilus coruscus Byssus Production. Journal of Shellfish Research (2015) 34(2):393-400. 

Mejlon E, De Wit P, Matamoros L, Erséus C. DNA-based phylogeny of the marine genus Heterodrilus(Annelida, Clitellata, Naididae). Journal of Zoological Systematics and Evolutionary Research (2015) 53: 194-199. doi:10.1111/jzs.12092 

Nilsson Sköld H, Baden SP, Looström J, Eriksson SP, Hernroth BE. Motoric impairment following manganese exposure in asteroid echinoderms. Aquatic Toxicology (2015) 167, 31-37

Nilsson Sköld H, Yngsell D, Mubashishir M, Wallin M.
Hormonal regulation of colour change in eyes of a cryptic fish. Biology Open, doi: 10.1242/​bio.20149993

Pédron N, Morvezen R, Le Moan A, Laroche J, Charrier G. (2015) New set of candidate gene SNPs and microsatellites to disentangle selective and neutral processes shaping population responses of European flounder (Platichthys flesus) to anthropogenic stress in contrasted estuaries. Conservation Genetics Resources 7, 823-823. doi:10.1007/s12686-015-0492-9

Purushothaman S, Saxena S, Meghah V, Brahmendra Swamy CV, Ortega-Martinez O, Dupont S, Idris M.Transcriptomic and Proteomic analyses of Amphiura filiformis arm tissue-undergoing regeneration. Journal of Proteomic 2015, 112: 113-124. doi: 10.1016/j.jprot.2014.08.011

Sassenhagen I, Sefbom J, Godhe A, Rengefors K. Germination and colonization success of Gonyostomum semen(Raphidophyceae) cysts after dispersal to new habitats. Journal of Plankton Research (2015) 0(0): 1–5. doi:10.1093/plankt/fbv067

Sassenhagen I, Sefbom J, Säll T, Godhe A, Rengefors K. Freshwater protists do not go with the flow: population
structure in Gonyostomum semen independent of
connectivity among lakes. Environmental Microbiology (2015) doi:10.1111/1462-2920.12987

Sassenhagen I, Wilken S, Godhe A, Rengefors K.
Phenotypic plasticity and differentiation in an invasive freshwater microalga. Harmful Algae. 2015, 41(2915) 38-45

Schlegel P, Binet MT, Havenhand JN, Doyle CJ, Williamson JE. Ocean acidification impacts on sperm mitochondrial membrane potential bring sperm swimming behaviour near its tipping point. Journal of Experimental Biology 2015 218:1084-1090.

Sefbom J, Sassenhagen I, Rengefors K, Godhe A. 2015 Priority effects in a planktonic bloom-forming marine diatom. Biology Letters. 11: 20150184.

Selander E, Kubanek J, Hamberg M, Andersson MX, Cervin G, Pavia H. Predator lipids induce paralytic shellfish toxins in bloom-forming algae. Proceedings of the National Academy of Sciences of the United States of America (PNAS) (2015) 
doi: 10.1073/pnas.1420154112

Sjöqvist C, Godhe A, Jonsson PR, Sundqvist L, Kremp A. Local adaptation and oceanographic connectivity patterns explain genetic differentiation of a marine diatom across the North Sea-Baltic Sea salinity gradient. Moleculal Ecology (2015) Jun;24(11):2871-85. doi: 10.1111/mec.13208.

Souche EL, Hellemans B, Babbucci M, MacAoidh E, Guinand B, Bargelloni L, Chistiakov DA, Patarnello T, Bonhomme F, Martinsohn JT, Volckaert FAM. Range-wide population structure of European sea bass Dicentrarchus labrax. Biological Journal of the Linnean Society, 2015, 116, 86–105. 

Toth GB, Larsson AI, Jonsson PR, Appelqvist C (2015) Natural Populations of Shipworm Larvae Are Attracted to Wood by Waterborne Chemical Cues. PLoS ONE 10(5): e0124950. doi:10.1371/journal.pone.0124950

Volckaert FA. Applying the hidden treasures of population biodiversity to decision making and management. Ocean & Coastal Management (2015) 118, 47-50. 
http://dx.doi.org/10.1016/j.ocecoaman.2014.12.018

Yuan X, Shao S, Dupont S, Meng L, Liu Y, Wang L. Impact of CO2-driven acidification on the development of the sea cucumber Apostichopus japonicus (Selenka) (Echinodermata: Holothuroidea). Marine Pollution Bulletin(2015), http://dx.doi.org/10.1016/j.marpolbul.2015.04.021
 

Andersen Ø, De Rosa MC, Yadav P, Pirolli D, Fernandes JMO, Berg PR, Jentoft S, Andrè C. The conserved Phe GH5 of importance for hemoglobin intersubunit contact is mutated in gadoid fish. BMC Evolutionary Biology2014, 14:54, doi:10.1186/1471-2148-14-54

Andrén MN, Kvarnemo C. (2014). Filial cannibalism in a nest-guarding fish: females prefer to spawn in nests with few eggs over many. Behavioral Ecology and Sociobiology, 68, 1565-1576. doi: 10.1007/s00265-014-1766-z

Appelqvist C, Havenhand JN, Toth GT. Distribution and abundance of teredinid recruits along the Swedish coast – are shipworms invading the Baltic Sea? Journal of the Marine Biological Association of the United Kingdom,available on CJO2014. doi:10.1017/S0025315414001830. 

Bailly X, ...[ Sam Dupont]... et al. The chimerical and multifaceted marine acoel Symsagittifera roscoffensis: from photosymbiosis to brain regeneration. Frontiers in Microbiology, doi: 10.3389/fmicb.2014.00498

Baumgartner FA, Pavia H, Toth GB. Individual Specialization to Non-Optimal Hosts in a Polyphagous Marine Invertebrate Herbivore. PLoS ONE 9(8): e102752. doi:10.1371/journal.pone.0102752

Baumgartner FA, Toth GB. Abundance and Size Distribution of the Sacoglossan Elysia viridis on Co-Occurring Algal Hosts on the Swedish West Coast. PLoS ONE (2014) 9(3): e92472. doi:10.1371/journal.pone.0092472

Bengtsson-Palme J, Alm Rosenblad M, Molin M, Blomberg A. Metagenomics reveals that detoxification systems are underrepresented in marine bacterial communities. BMC Genomics, doi: 10.1186/1471-2164-15-749.

Braga Gonçalves I, Mobley KB, Ahnesjö I, Sagebakken G, Jones AG, Kvarnemo C. Effects of mating order and male size on embryo survival in a pipefish. Biological Journal of the Linnaean Society, 2014, 114, 639-645. doi: 10.1111/bij.12441

Butlin RK, Saura M, Charrier G, Jackson B, André C, Caballero A, Coyne J A, Galindo J, Grahame JW, Hollander J, Kemppainen P, Martínez-Fernández M, Panova M, Quesada H, Johannesson K, Rolan-Alvarez E. (2014) Parallel evolution of local adaptation and reproductive isolation in the face of gene flow. Evolution 68, 935-949.

Carey N, Dupont S, Lundve B, Sigwart JD. One size fits all: stability of metabolic scaling under warming and ocean acidification in echinoderms. Marine Biology, doi 10.1007/s00227-014-2493-8

Delroisse J, Ullrich-Lüter E, Ortega-Martinez O, Dupont S, Arnone MI, Mallefet J, Flammang P. High opsin diversity in a non-visual infaunal brittle star. BMC Genomics 2014, 15:1035 doi:10.1186/1471-2164-15-1035

De Wit P, Rogers-Bennett L, Kudela RM, Palumbi SR. Forensic genomics as a novel tool for identifying the causes of mass mortality events. Nature Communications (2014) 5: 3652. doi:10.1038/ncomms4652

Dupont S, Hall E, Calosi P, Lundve B. First Evidence of Altered Sensory Quality in a Shellfish Exposed to Decreased pH Relevant to Ocean Acidification. Journal of Shellfish Research, 2014, 33(3):857-861.

Eklöf J, Havenhand J, Alsterberg C, Gamfeldt L. Community-level effects of rapid experimental warming and consumer loss outweigh effects of rapid ocean acidification. Oikos (2014) doi: 10.1111/oik.01544

Faria R, Renaut S, Galindo S, Pinho C, Melo-Ferreira, Melo M, Jones F, Salzburger W, Schluter D, Butlin R. (2014) Advances in Ecological Speciation: an integrative approach. Molecular Ecology 23, 513-521.

Gaylord B,...[Dupont S]... et al. Ocean acidification through the lens of ecological theory.  Ecology, http://dx.doi.org/10.1890/14-0802.1

Gianguzza P, Visconti G, Gianguzza F, Vizzini S, Sarà G, Dupont S. Temperature modulates the response of the thermophilous sea urchin Arbacia lixula early life stages to CO2-driven acidification. Marine Environmental Research (2014) pii: S0141-1136(13)00123-2. doi:10.1016/j.marenvres.2013.07.008

Godhe A, Kremp A, Montresor M. Genetic and Microscopic Evidence for Sexual Reproduction in the Centric Diatom Skeletonema marinoi. Protist, Vol. 165, 401–416, August 2014

Gräns, A, Jutfelt F, Sandblom E, Jönsson E, Wiklander K, Seth H, Olsson C, Dupont S, Ortega-Martinez O, Einarsdottir I, Björnsson BT, Sundell K, Axelsson M. Aerobic scope fails to explain the detrimental effects on growth resulting from warming and elevated CO2 in Atlantic halibut. The Journal of Experimental Biology (2014) 217, 711-717, doi: 10.1242/​jeb.096743

Harvey BP, et al. Evolution of Marine Organisms under Climate Change at Different Levels of Biological Organisation. Water 2014 6(11) 3545-3574, doi:10.3390/w6113545

Hilmi N, Allemand D, Cinar M, Cooley S, Hall-Spencer JM, Haraldsson G, Hattam C, Jeffree RA, Orr JC, Rehdanz K, Reynaud S, Safa A, Dupont S. Exposure of Mediterranean Countries to Ocean Acidification. Water2014, 6(6), 1719-1744; doi:10.3390/w6061719

Hu MY, Casties I, Stumpp M, Ortega-Martinez O, Dupont ST. Energy metabolism and regeneration impaired by seawater acidification in the infaunal brittlestar, Amphiura filiformis. The Journal of Experimental Biology(2014) Published online. doi: 10.1242/​jeb.100024

Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JK, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J. Concerted Evolution of Life Stage Performances Signals Recent Selection on Yeast Nitrogen Use. Molecular Biology and Evolution. 2014 Oct 27. pii: msu285. PMID: 25349282

Keeling PJ, …[Rengefors K]… et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biology 12(6): e1001889. doi:10.1371/journal.pbio.1001889

Lavergne E, Calves I, Meistertzheim AL, Charrier G, Zajonz U, Laroche J. (2014) Complex genetic structure of a catadromous fish in temporarily open closed estuaries from the wider Gulf of Aden. Marine Biology 161, 113-1126.

Moksnes PO, Corell H, Tryman K, Hordoir R, Jonsson PR. Larval behavior and dispersal mechanisms in shore crab larvae (Carcinus maenas): Local adaptations to different tidal environments? Limnology and Oceanography, 59(2), 2014, 588–602

Morris MRJ, R Richard, EH Leder, RDH Barrett, N Aubin-Horth, SM Rogers. 2014. Gene expression plasticity facilitates and evolves in response to colonization of freshwater lakes in threespine stickleback. Molecular Ecology, 23(13):3226-3240.

Navarro A, Faria R. (2014) Pool and conquer: new tricks for (c)old problems. Molecular Ecology 23, 1653-1655.

Leidenberger S, De Giovanni R, Kulawik R, Williams AR, Bourlat SJ. Mapping present and future potential distribution patterns for a meso-grazer guild in the Baltic Sea. Journal of Biogeography, doi: 10.1111/jbi.12395

Leder EH, McCairns RJS, Leinonen T, Cano JM, Viitaniemi HM, Nikinmaa M, Primmer CR, Merilä J. The evolution and adaptive potential of transcriptional variation in sticklebacks – signatures of selection and widespread heritability. Molecular Biology and Evolution, 2014, doi: 10.1093/molbev/msu328.

Panova M, Johansson T, Canbäck B, Bentzer J, Alm Rosenblad M, Johannesson K, Tunlid A, André C. Species and gene divergence in Littorina snails detected by array comparative genomic hybridization. BMC Genomics 2014, 15:687, doi:10.1186/1471-2164-15-687

Papakostas S, Vøllestad LA, Bruneaux M, Aykanat T, Vanoverbeke J, Ning M, Primmer CR, Leder EH. Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions. Nature Communications 5, Article number: 4071 doi:10.1038/ncomms5071

Ramachandra R, Namburi, RB, Ortega-Martinez O, Shi X, Zaia J, Dupont ST, Thorndyke MC, Lindahl U, Spillman D. Brittlestars contain highly sulfated chondroitin sulfates/dermatan sulfates that promote fibroblast growth factor 2-induced cell signaling. Glycobiology (2014) doi: 10.1093/glycob/cwt100, published online

Ritchie MG, Butlin RK. 2014. The genetics of insect mating systems. In: The Evolution of Insect Mating Systems, Shuker DM and Simmons LW. Pp. 59-77. Oxford UP. 

Schlegel P, Havenhand JN, Obadia N, Williamson JE. Sperm swimming in the polychaete Galeolaria caespitosashows substantial inter-individual variability in response to future ocean acidification. Marine Pollution Bulletin(2014), http://dx.doi.org/10.1016/j.marpolbul.2013.10.040

Seehausen O, Butlin RK,.. et al. Genomics and the origin of species. Nature Reviews Genetics 15, 176–192 (2014) doi:10.1038/nrg3644. Published online 18 February 2014

Singh A, Hårding K, Reddy HRV, Godhe A. An assessment of Dinophysis blooms in the coastal Arabian Sea. Harmful Algae (2014) 34, 29-35

Sjöqvist C, Kremp A, Lindehoff E, Båmstedt U, Egardt J, Gross S, Jönsson M, Larsson H, Pohnert G, Richter H, Selander E, Godhe A. Effects of Grazer Presence on Genetic Structure of a Phenotypically Diverse Diatom Population. Microbial Ecology (2014) doi: 10.1007/s00248-013-0327-8

Sotelo G, Andree KB, López MA, Alexandrino P, Gisbert E, Faria R. (2014) The puzzling demographic history and genetic differentiation of the twaite shad (Alosa fallax) in the Ebro River. Conservation Genetics 15, 1037-1052

Strand M, Panova M. Size of genera - biology or taxonomy? Zoologica Scripta. 2014, 44, 106-116.

Sunday JM, Calosi P, Dupont S, Munday PL, Stillman JH, Reusch TBH. Evolution in an acidifying ocean. Trends in Ecology and Evolution. 2014, Vol. 29, No. 2, 117-125.

Svanfeldt K, Lundqvist L, Rabinowitz C, Nilsson Sköld H, Rinkevich B. Repair of UV-induced DNA damage in shallow water colonial marine species. Journal of Experimental Marine Biology and Ecology (2014) 452, Pages 40–46.

Telford MJ, Lowe CJ, Cameron CB, Ortega-Martinez O, Aronowicz J, Oliveri P, Copley RR. Phylogenomic analysis of echinoderm class relationships supports Asterozoa. Proceedings of Biological Sciences. 2014 Jul 7;281(1786). pii: 20140479. doi: 10.1098/rspb.2014.0479.

Thor P, Dupont S. Transgenerational effects alleviate severe fecundity loss during ocean acidification in a ubiquitous planktonic copepod. Global Change, (2014) DOI: 10.1111/gcb.12815

Warringer J, Blomberg A. (2014) Yeast Phenomics – Large-Scale Mapping of the Genetic Basis for Organismal Traits. Book chapter in “Phenomics” ed John Hancock. SBN 9781466590953 

Westram AM, Galindo J, Alm Rosenblad M, Grahame JW, Panova M, Butlin RK. Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations? Molecular Ecology, doi: 10.1111/mec.12883

Wood HL, Nylund G, Eriksson SP. Physiological plasticity is key to the presence of the isopod Idotea baltica(Pallas) in the Baltic Sea. Journal of Sea Research (2014) 85: 255-262.

Wood HL, Sköld HN, Eriksson SP. Health and population‑dependent effects of ocean acidification on the marine isopod Idotea balthica. Marine Biology, 2014 161(10):2423-2421

Wrange AL, André C, Lundh T, Lind U, Blomberg A, Jonsson PJ, Jon N Havenhand JN. Importance of plasticity and local adaptation for coping with changing salinity in coastal areas: a test case with barnacles in the Baltic Sea. BMC Evolutionary Biology 2014, 14:156, doi:10.1186/1471-2148-14-156
 

Alsterberg C, Eklöf JS, Gamfeldt L, Havenhand JN, Sundbäck K. (2013) Consumers mediate the effects of experimental ocean acidification and warming on primary producers. PNAS 2013 : 1303797110v1-201303797

Bengtsson-Palme J, Ryberg M, Hartmann M, Branco S, Wang Z, Godhe A, De Wit P, Sánchez-García M, Ebersberger I, de Sousa F, Amend A, Jumpponen A, Unterseher M, Kristiansson E, Abarenkov K, Bertrand YJK, Sanli K, Eriksson KM, Vik U, Veldre V, Nilsson RH. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution (2013) 4: 914-919. doi:10.1111/2041-210X.12073

Bradassi F, Cumani F, Bressan G, Dupont S. (2013) Early reproductive stages in the crustose coralline alga Phymatolithon lenormandii are strongly affected by mild ocean acidification. Marine Biology.  doi: 10.1007/s00227-013-2260-2

Calves I, Lavergne E, Meistertzheim AL, Charrier G, Cabral H, Guinand B, Quiniou L, Laroche J. (2013) Genetic structure of European flounder Platichthys flesus: effects of both the southern limit of the species’ range and chemical stress. Marine Ecology Progress Series 472, 257-273. doi:10.3354/meps09797 

Charrier G, Ring AK, Johansson E, Dahl M, Saltin SH, Panova M, Johannesson K, Carl André C. Characterization of new est-linked microsatellites in the rough periwinkle (Littorina saxatilis) and application for parentage analysis. Journal of Molluscan Studies (2013) 1-3. doi:10.1093/mollus/eyt027

DeFaveri J, Jonsson PR, Merilä J. Heterogeneous genomic differentiation in marine three-spine sticklebacks: adaptation along an environmental gradient. Evolution (2013) 67: 2530-2546, doi: 10.1111/evo.12097 

De Wit P, Palumbi SR. Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation. Molecular Ecology (2013) 22: 2884-2897. doi:10.1111/mec.12081

Dorey N, Lancon P, Thorndyke M, Dupont S. Assessing physiological tipping point of sea urchin larvae exposed to a broad range of pH. Global Change Biology (2013) 
doi: 10.1111/gcb.12276

Dupont S, Pörtner HO. A snapshot of ocean acidification research. Marine Biology (2013) 
doi: 10.1007/s00227-013-2282-9

Dupont ST, Thorndyke MS. Direct impacts of near-future ocean acidification on sea urchins. In: Fernández-Palacios JM, de Nascimento L, Hernández JC, Clemente S, González A & Díaz-González JP. Climate change perspective from the Atlantic: past, present and future. Servicio de Publicaciones, Universidad de La Laguna. (2013) pp. 461-485. ISBN: 9788415910541

Enge S, Nylund GM, Pavia H. Native generalist herbivores promote invasion of a chemically defended seaweed via refuge-mediated apparent competition. Ecology Letters (2013) 16: 487-492. PubMed 

Eriksson A, Wolff FE, Mehlig B. Metapopulation dynamics on the brink of extinction. Theoretical Population Biology (2013) 83, 101-122.

Evrard E, Devaux A, Bony S, Cachot J, Charrier G, Quiniou L, Laroche J. (2013) Responses of juvenile European flounder (Platichthys flesus) to multistress in the Vilaine estuary, during a 6-month survey. Environmental Science and Pollution Research 20, 676-689. doi:10.1007/s11356-012-1138-z

Fauville G, Säljö R, Dupont S. Impact of ocean acidification on marine ecosystems: educational challenges and innovations. Marine Biology (2013), doi: 10.1007/s00227-012-1943-4

Flot J-F, Dahl MP, André C. Lophelia pertusa corals from the Ionian and Barents seas share identical nuclear ITS2 and near-identical mitochondrial genome sequences. BMC Research Notes. (2013) 6: 44.

Godhe A. Using the sediment archive of living dinoflagellate cysts and other protist resting stages to study dynamics through time. In: Biological and Geological Perspectives of Dinoflagellates (The Micropalaeontological Society). Edited by F. Marret, J.M. Lewis & L.R. Bradley, 373 pp. (2013) ISBN 978-1-86239-368-4

Godhe A, Egardt J, Kleinhans D, Sundqvist L, Hordoir R, Jonsson PR. Seascape analysis reveals regional gene flow patterns among populations of a marine planktonic diatom. Proceedings of the Royal Society B. (2013) 280(1773) 
doi: 10.1098/rspb.2013.1599

Huserbråten MBO, Moland E, Knutsen H, Olsen EM, André C, Stenseth NC. Conservation, spillover and gene flow within a network of northern MPAs. PLoS ONE. https://doi.org/10.1371/journal.pone.0073388 Joyce A, Holthuis TD, Charrier G, Lindegarth S. (2013) Experimental effects of temperature and photoperiod on synchrony of gametogenesis and sex ratio in the European oyster, Ostrea edulis (Linnaeus). Journal of Shellfish Research 31, 213-221. doi:10.2983/035.032.0225

Kvarnemo C, Simmons LW. Polyandry as a mediator of sexual selectiuon before and after mating. Philosofical Transactions of the Royal Society B (2013) 368 (1613) 20120042. 
doi: 10.1098/rstb.2012.0041

Lebret K, Kritzberg ES,Rengefors K. Population Genetic Structure of a Microalgal Species under Expansion. PLoS ONE 8(12): e82510. doi:10.1371/journal.pone.0082510

Lind U, Alm Rosenblad M, Wrange A-L, Sundell KS, Jonsson PR, André C, Havenhand J, Blomberg A. Molecular Characterization of the α-Subunit of Na+/K+ ATPase
from the Euryhaline Barnacle Balanus improvisus Reveals Multiple Genes and Differential Expression of Alternative Splice Variants. PLoS ONE (2013) 8(10):e77069.
doi:10.1371/journal.pone.0077069 Morvezen R, Cornette F, Charrier G, Guinand B, Lapègue S, Boudry P, Laroche J. (2013). Muliplex PCR sets of novel microsatellite loci for the great scallop Pecten maximus and their application in parentage assignment. Aquatic Living Resources 26, 207-213. doi:10.1051/alr/2013052

Nasrolahi A, Pansch C, Lenz M, Wahl M. Temperature and salinity interactively impact early juvenile development: a bottleneck in barnacle ontogeny. Marine Biology (2013). 
doi: 10.1007/s00227-012-2162-8

Ng TPT, Saltin SH, Davies MS, Johannesson K, Stafford R, Williams GA. Snails and their trails: the multiple functions of trail-following in gastropods. Biological Reviews (2013) 88: 683-700. doi: 10.1111/brv.12023

Nylund GM, Enge S, Pavia H. Costs and benefits of chemical defence in the red alga Bonnemaisonia hamifera. PLoS ONE (2013) 8(4): e61291

Pansch C, Schaub I, Havenhand J, Wahl M. Habitat traits and food availability determine the response of marine invertebrates to ocean acidification. Global Change Biology. (2013). doi: 10.1111/gcb.12478

Pansch C, Schlegel P, Havenhand J. Larval development of the barnacle Amphibalanus improvisus responds variably but robustly to near-future ocean acidification. ICES Journal of Marine Science (2013), 70(4), 805–811. doi:10.1093/icesjms/fst092

Pedroso SS, Barber I, Svensson O, Fonseca PJ, Amorim MCP. Courtship Sounds Advertise Species Identity and Male Quality in Sympatric Pomatoschistus spp. Gobies. PLoS ONE (2013)8(6): e64620. doi:10.1371/journal.pone.0064620

Pereyra RT, Huenchuñir C, Johansson D, Forslund H, Kautsky L, Jonsson PR, Johannesson K.  Parallel speciation or long-distance dispersal? Lessons from seaweeds (Fucus) in the Baltic Sea. Journal of Evolutionary Biology (2013), doi: 10.1111/jeb.12170

Rafajlovic M, Eriksson A, Rimark A, Saltin SH, Charrier G, Panova M, André C, Johannesson K, Mehlig B.2013. The effect of multiple paternity on genetic diversity of small populations during and after colonisation. PLoS ONE 8(10): e75587. doi:10.1371/journal.pone.0075587

Saltin SH, Schade H, Johannesson K.
Preference of males for large female causes a partial mating barrier between a large and a small ecotype of Littorina fabalis (W. Turton, 1825). Journal of Molluscan Studies (2013) doi: 10.1093/mollus/eyt003

Saxena S, Dupont S, Meghah V, Meena Lakshmi MG, Singh SK, Brahmendra Swamy CV, Idris MM.Proteome map of the neural complex of the Tunicate Ciona intestinalis, the closest living relative to vertebrates. Proteomics (2013) doi: 10.1002/pmic.201200148

Stumpp M, Hu M, Casties I, Saborowski R, Bleich M, Melzner F, Dupont S. Digestion in sea urchin larvae impaired under ocean acidification. Nature Climate Change (2013) doi:10.1038/nclimate2028

Styf H, Nilsson Sköld H, Eriksson S. Embryonic response to long-term exposure of the marine crustacean Nephrops norvegicus to ocean acidification and elevated temperature. Ecology and Evolution (2013) doi: 10.1002/ece3.860 

Tait K, Havenhand JN. Investigating a possible role for the bacterial signal molecules N-acylhomoserine lactones in Balanus improvisus cyprid settlement.  Molecular Ecology (2013) 22: doi: 10.1111/mec.12273.

Teacher AGF, André C, Jonsson PR, Merilä J. Oceanographic connectivity and environmental correlates of genetic structuring in Atlantic herring in the Baltic Sea. Evolutionary Applications (2013) 6:549-567. doi: 10.1111/eva.12042

Vihtakari M, Hendriks IE, Holding J, Renaud PE, Duarte CM, Havenhand JN. Effects of Ocean Acidification and Warming on Sperm Activity and Early Life Stages of the Mediterranean Mussel (Mytilus galloprovincialis). Water 2013, 5, 1890-1915; doi:10.3390/w5041890

Wangensteen OS, Dupont S, Casties I, Turon X, Palacína C. Some like it hot: Temperature and pH modulate larval development and settlement of the sea urchin Arbacia lixula. Journal of Experimental Marine Biology and Ecology (2013) 449: 304-311

Weber AAT, Dupont S, Chenuila A. Thermotolerance and regeneration in the brittle star species complex Ophioderma longicauda: A preliminary study comparing lineages and Mediterranean basins. Comptes Rendus Biologies. Published online.  http://dx.doi.org/10.1016/j.crvi.2013.10.004 

Wennerström L, Laikre L, Ryman N, Utter FM, Ab Ghani NI, André C, DeFaveri J, Johansson D, Kautsky L, Merilä J, Mikhailova N, Pereyra R, Sandström A, Teacher AGF, Wenne R, Vasemägi A, Zbawicka M, Johannesson K, Primmer CR. Genetic biodiversity in the Baltic Sea: species-specific patterns challenge management. Biodiversity and Conservation. DOI 10.1007/s10531-013-0570-9

Zörgö E, Chwialkowska K, Gjuvsland AB, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J.Ancient evolutionary trade-offs between yeast ploidy states. Plos Genetics, (2013) 9:e1003388
 

Berglund M, Nilsson Jacobi M, Jonsson PR. Optimal selection of marine protected areas based on connectivity and habitat quality. Ecological Modelling (2012) 240, 105-112

Björk JR, Kvarnemo C. (2012). Mechanisms behind size-assortative nest choice by sand goby males in absence of intrasexual competition. Animal Behaviour (2012) 83(1): 55–62. doi:10.1016/j.anbehav.2011.09.033

Brander K, Havenhand J. Impacts of Climate Change, Including Acidification, on Marine Ecosystems and Fisheries. In: Reckermann M., Brander K., MacKenzie B. R. & Omstedt A. (Eds.), Climate impacts on the Baltic Sea: from science to policy, pp 129-160. Berlin Heidelberg: Springer-Verlag. 

Burns G, Ortega-Martinez O, Dupont S, Thorndyke MC, Peck LS, Clark MS. Intrinsic gene expression during regeneration in arm explants of Amphiura filiformis. Journal of Experimental Marine Biology and Ecology 413 (2012) 106–112.

Canbäck B, André C, Galindo J, Johannesson K, Johansson T, Panova M, Tunlid A, Butlin R. The Littorina sequence database (LSD) – an online resource for genomic data.
Molecular Ecology Resources, 2012, 12 (1) 142–148,
doi: 10.1111/j.1755-0998.2011.03042.x

Carney Almroth B, Sköld M, Nilsson Sköld H. Gender differences in health and aging of Atlantic cod subject to size selective fishery. Biology Open 000, (2012) 1–7. doi: 10.1242/bio.20121446

Chan KYK, Grünbaum D, Arnberg M, Thorndyke M, Dupont ST. Ocean acidification induces budding in larval sea urchins. Published online in Marine Biology (2012). 7 pp. doi: 10.1007/s00227-012-2103-6

Charrier G, Morvezen R, Calves I, Laroche J. (2012) Development of new microsatellite markers derived from expressed sequence tags for the great scallop (Pecten maximus). Conservation Genetic Resources (2012) 4: 931. https://doi.org/10.1007/s12686-012-9676-8

Chauvaud L, Patry Y, Jolivet A, Cam E, Le Goff C, Strand Ø, Charrier G, Thébault J, Lazure P, Gotthard K, Clavier J. Variation in Size and Growth of the Great Scallop Pecten maximus along a Latitudinal Gradient. PLoS ONE (2012) 7(5): e37717. doi:10.1371/journal.pone.0037717

Corell H, Moksnes PO, Engqvist A, Döös K, Jonsson PR. Depth distribution of larvae critically affects their dispersal and the efficiency of marine protected areas. Marine Ecology Progress Series (2012) 467:29-46, doi: 10.3354/meps09963

Dahl MP, Pereyra RT, Lundälv T, André C. Fine-scale spatial genetic structure and clonal distribution of the cold-water coral Lophelia pertusa. Coral Reefs. (2012) 31: 1135-1148.

Dupont S, Dorey N, Stumpp M, Melzner F, Thorndyke M. Long-term and trans-life-cycle effects of exposure to ocean acidification in the green sea urchin Strongylocentrotus droebachiensis. Published online in Marine Biology(2012)
doi: 10.1007/s00227-012-1921-x

Dupont S, Moya A, Bailly X. Stable Photosymbiotic Relationship under CO2-Induced Acidification in the Acoel Worm Symsagittifera Roscoffensis. PLoS ONE 7(1): e29568. doi:10.1371/journal.pone.0029568

Dupont S, Thorndyke M. Relationship between CO2-driven changes in extracellular acid–base balance and cellular immune response in two polar echinoderm species. Journal of Experimental Marine Biology and Ecology(2012), Vol 424-425, 32-37. doi:10.1016/j.jembe.2012.05.007

Eklöf JS, Alsterberg C, Havenhand JN, Sundbäck K, Wood HL, Lars Gamfeldt L. Experimental climate change weakens the insurance effect of biodiversity. Ecology Letters (2012) 15(8): 864–872
       Enge S, Nylund GM, Harder T, Pavia H. An exotic chemical weapon explains low herbivore damage in an invasive alga. Ecology, (2012) 93(12), pp. 2736-2745

Harding KC, Begon M, Eriksson A, Wennberg B. Increased migration in host–pathogen metapopulations can cause host extinction. Journal of Theoretical Biology, 298 (2012) 1–7

Harkonen T, Harding KC, Wilson S, et al. Collapse of a Marine Mammal Species Driven by Human Impacts. Plos ONE (2012) 7

Havenhand JN. How will Ocean Acidification Affect Baltic Sea Ecosystems? An Assessment of Plausible Impacts on Key Functional Groups. AMBIO 2012, 41:637-644. doi 10.1007/s13280-012-0326-x

Hernroth B, Nilsson Sköld H, Wiklander K, Jutfelt F, Baden S. Simulated climate change causes immune suppression and protein damage in the crustacean Nephrops norvegicus. 
Fish & Shellfish Immunology (2012), 
http://dx.doi.org/10.1016/j.fsi.2012.08.011

Hilmi N, Allemand D, Dupont S, Safa A, Haraldsson G, Nunes PALD, Moore C, Hattam C, Reynaud S, Hall-Spencer JM, Fine M, Turley C, Jeffree R, Orr J, Munday PL, Cooley SR. Towards improved socio-economic assessments of ocean acidification’s impacts. 
Marine Biology (2012), pp. 1-15. 
doi: 10.1007/s00227-012-2031-5

Johannesson K, Forslund H, Åstrand Capetillo N, Kautsky L, Johansson D, Pereyra RT, Råberg S. Phenotypic variation in sexually and asexually recruited individuals of the Baltic Sea endemic macroalga Fucus radicans: in the field and after growth in a common-garden. BMC Ecology 2012, 12:2 doi:10.1186/1472-6785-12-2

Kremp A, Godhe A, Egardt J, Dupont S, Suikkanen S, Casabianca S, Penna A. Intraspecific variability in the response of bloom-forming marine microalgae to changed climate conditions. Published online in Ecology and Evolution, doi: 10.1002/ece3.245

Lebret K, Fernandez M, Corneliussen Hagman CH, Rengefors K, Hansson L-A. Grazing resistance allows bloom formation and may explain invasion success of Gonyostomum semen. Limnology & Oceanography 2012, 57(3):727-734
doi: 10.4319/lo.2012.57.3.0727

Leidenberger S, Harding K, Jonsson PR. 
Ecology and distribution of the isopods Idotea spp. in the Baltic Sea: key species in a changing environment. Journal of Crustacean Biology 2012, 32: 359-381

Limborg MT, Hanel R, Debes PV, Ring AK, André C, Tsigenopoulos CS, Bekkevold D. Imprints from genetic drift and mutation imply relative divergence times across marine transition zones in a pan-European small pelagic fish (Sprattus sprattus). Published online in Heredity (2012), 00, 1-12, doi:10.1038/hdy.2012.18

Luttikhuizen PC, Drent J, van der Veer HW, Johannesson K. Genetic architecture in a marine hybrid zone: outlier detection and genomic clone analysis in the marine bivalve Macoma balthica. Published online in Molecular Ecology (2012), doi: 10.1111/j.1365-294X.2012.05586.

Meier H, H Andersson, B Arheimer, T Blenckner, B Chubarenko . . . JN Havenhand et al., (2012) Comparing reconstructed past variations and future projections of the Baltic-Sea ecosystem – first results from multi-model ensemble simulations. Environmental Research Letters 7: doi: 10.1088/1748-9326/7/3/034005 

Nilsson Jacobi M, André C, Döös K, Jonsson PR. Identification of subpopulations from connectivity matrices. Published online in Ecography, 11 JUN 2012. 
doi: 10.1111/j.1600-0587.2012.07281.x

Nylund GM, Pereyra RT, Wood, HL, Johannesson K, Pavia H. Increased resistance towards generalist herbivory in the new range of a habitat-forming seaweed. Ecosphere (2012) 3(12):125. http://dx.doi.org/10.1890/ ES12-00203.1

Pavia H, Baumgartner F, Cervin G, Enge S, Kubanek J, Nylund GM, Selander E, Svensson RJ, Toth GB. Chemical defences against herbivores, in Chemical Ecology in Aquatic Systems, editors Brönmark C, Hansson LA, Oxford University Press. 2012, 210-235.

Pereyra RT, Westgaard JI, Dahl M, Johansen T, Knutsen H, Ring AK, Søvik G, André C. Isolation and characterization of nuclear microsatellite loci in the northern shrimp, Pandalus borealis. Conservation Genetic Resources, (2012) 4(1) 109-112. doi:10.1007/s12686-011-9486-4

Roger F, Godhe A, Gamfeldt L. Genetic Diversity and Ecosystem Functioning in the Face of Multiple Stressors. PLoS ONE 7(9): e45007. doi:10.1371/journal.pone.0045007

Schaper E, Eriksson A, Rafajlovic M, Sagitov S, Mehlig B. Linkage disequilibrium under recurrent bottlenecks. Genetics (2012) 190, 217 

Schlegel P, Havenhand JN, Gillings MR, Williamson JE. Individual variability in reproductive success determines winners and losers under ocean acidification: A case study with sea urchins. PLoS ONE (2012) 7(12): e53118. doi:10.1371/journal.pone.0053118

Selander E, Fagerberg T, Wohlrab S, Pavia H. Fight and flight in Dinoflagellates? -Kinetics of simultaneous grazer induced responses in Alexandrium tamarense. Limnology & Oceanography. (2012) 57(1):58-64.
doi:10.4319/lo.2012.57.1.0058 

Stumpp M, Hu MY, Melznerb F, Gutowska MA, Dorey N, Himmerkusa N, Holtmanna WC, Dupont ST, Thorndyke MC, Bleicha M. Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification. PNAS Early edition. www.pnas.org/cgi/doi/10.1073/pnas.1209174109

Sundqvist L, Harkonen T, Svensson CJ, Harding KC. Linking climate trends to population dynamics in the Baltic Ringed Seal: Impacts of historical and future winter temperatures. AMBIO, doi 10.1007/s13280-012-0334-x

Svensson JR, Lindegarth M, Jonsson PR, Pavia H. Disturbance-diversity models: what do they really predict and how are they tested? Proceedings of the Royal Society B (2012) 279: 2163-2170. doi: 10.1098/rspb.2011.2620

Svensson JR, Nylund GM, Cervin G, Toth GB, Pavia H. Novel chemical weapon of an exotic macroalga inhibits recruitment of native competitors in the invaded range. Journal of Ecology (2012) 101: 140-148. doi: 10.1111/1365-2745.12028

Teacher AGF, André C, Merilä J, Wheat CW. Whole mitochondrial genome scan for population structure and selection in the Atlantic herring. BMC Evolutionary Biology (2012) 12:248 doi:10.1186/1471-2148-12-248

Takegaki T, Svensson O, Kvarnemo C. Socially induced tactic change in 2 types of sand goby sneaker males. Behavioral Ecology. (2012). doi:10.1093/beheco/ars022 

Thomsen J, Casties I, Pansch C, Körtzinger A, Melzner F. Food availability outweighs ocean acidification effects in juvenile Mytilus edulis: laboratory and field experiments. Global Change Biology (2012). doi: 10.1111/gcb.12109

Troedsson C, Bouquet JM, Lobon, CM, Novac A, Nejstgaard JC, Dupont S, Bosak S, Jakobsen HH, Romanova N, Pankoke LM, Isla A, Dutz J, Sazhin AF, Thompson EM. Effects of ocean acidification, temperature and nutrient regimes on the appendicularian Oikopleura dioica: a mesocosm study. Marine Biology(2012). Published online. doi:10.1007/s00227-012-2137-9

Zörgö E, Gjuvsland A, Cubillos FA, Louis EJ, Liti G, Blomberg A, Omholt SW, Warringer J. Life History Shapes Trait Heredity by Accumulation of Loss-of-Function Alleles in Yeast. Molecular Biology and Evolution(2012) 29(7):1781–1789. doi:10.1093/molbev/mss019
 

Andersen O, De Rosa MC, Pirolli D, Tooming-Klunderud A, Petersen PE, André C.Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics (2011) 12:51. doi:10.1186/1471-2156-12-51

André C, Larsson LC, Laikre L, Bekkevold, D, Brigham J, Carvalho GR, Dahlgren TG, Hutchinson WF, Mariani S, Mudde K, Ruzzante DE, Ryman N. 
Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): direct, simultaneous evaluation of neutral vs putatively selected loci. Heredity (2011) 106: 270-280

Blomberg A. Measuring growth rate in high-throughput growth phenotyping. Current Opinion in Biotechnology2011, 22:94–102. https://doi.org/10.1016/j.copbio.2010.10.013

Braga Goncalves I, Ahnesjö I, Kvarnemo C. The relationship between female body size and egg size in pipefishes. Journal of Fish Biology (2011) 78: 1847–1854. doi:10.1111/j.1095-8649.2011.02984.x

Brown WRA, Liti G, Rosa C, James S, Roberts I, Robert V, Jolly N, Tang W, Baumann P, Green C, Schlegel K, Young J, Hirchaud F, Leek S, Thomas G, Blomberg A, Warringer J. A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity. G3: Genes, Genomes, Genetics (2011) 1(7):615-626
doi:10.1534/g3.111.001123

Burns G, Ortega-Martinez O, Thorndyke MC, Lloyd SP, Dupont S, Clark MS. 
Dynamic gene expression profiles during arm regeneration in the brittle star Amphiura filiformisJournal of Experimental Marine Biology and Ecology (2011) 407:315-322. doi:10.1016/j.jembe.2011.06.032

Cubillos FA, Billi E, Zörgö E, Parts L, Fargier P, Omholt S, Blomberg A, Warringer J, Louis EJ, Liti G.
Assessing the complex architecture of polygenic traits in diverged yeast populations. Molecular Ecology (2011) 20:1401. 

Findlay HS*, Wood HL,* Kendall MA, Spicer JI, Twitchett RJ, Widdicombe S. Comparing the impact of high CO2 on calcium carbonate structures in different marine organisms. Marine Biology Research (2011) 7(6): 565-575 *joint 1st authorship

Greeshma N, Godhe A, Blomberg A, Johander P. Orientation and immobilisation of diatoms. In: Kuck, H., Reinecke, H., and Dimov, S. (eds) Proceedings of the 8th International Conference on Multi-Material Micro Manufacture (4M 2011) DOI: 10.3850/978-981-07-0319-6_255. p. 172-175.
       Hernroth B, Baden S., Thorndyke, M, Dupont S. Immune suppression of the echinoderm Asterias rubens (L.) following long-term ocean acidificationAquatic Toxicology (2011) 103:222-224, doi:10.1016/j.aquatox.2011.03.001

Härnström K, Ellegaard, M, Andersen TJ, Godhe A. Hundred years of genetic structure in a sediment revived diatom population. Proceedings of the National Academy of Sciences of the United States of America (PNAS), (2011) 108 ( 10 ) s. 4252-4257. doi 10.1073/pnas.1013528108. 

Jaspers C, Møller LF, Kiørboe T. Salinity Gradient of the Baltic Sea Limits the Reproduction and Population Expansion of the Newly Invaded Comb Jelly Mnemiopsis leidyi. PloS One (2011) 6(8): e24065. doi:10.1371/journal.pone.0024065

Johannesson K, Johansson D, Larsson KH, Huenchuñir CJ, Perus J, Forslund H, Kaustky L, Pereyra RT. 
Frequent clonality in fucoids (Fucus radicans and Fucus vesiculosus; Fucales, Phaeophyceae) in the Baltic Sea. Journal of Phycology (2011) 47, 990-998

Johannesson K, Smolarz K, Grahn M, André C. 
The Future of Baltic Sea Populations: Local Extinction or Evolutionary Rescue? AMBIO (2011) 40:179–190, DOI 10.1007/s13280-010-0129-x

Järvi-Laturi M, Lindström K, Kvarnemo C, Svensson O. 
Sand goby males trade off between defence against egg predators and sneak intrusions. Journal of Zoology (2011) 283:269-275 doi:10.1111/j.1469-7998.2011.00788.x

Kemppainen P, Lindskog T, Butlin R, Johannesson K.
Intron sequences of arginine kinase in an intertidal snail suggest an ecotype-specific selective sweep and a gene duplication.
Heredity 2011, 2016(5):808-16. doi:10.1038/hdy.2010.123

Kleinhans D, Jonsson PR. 
On the impact of dispersal asymmetry on metapopulation persistence. Journal of Theoretical Biology (2011) 290:37-45

Knutsen H, Olsen EM, Jorde PE, Espeland, SH, André C, Stenseth NC. 
Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod. Molecular Ecology (2011) 20, 768-783. doi:10.1111/j.1365-294X.2010.04979.x

Kvarnemo, C.
Stressed singers and symmetric lovers. Behavioral Ecology (2011) 22: 11-12. doi: 10.1093/beheco/arq082

Kvarnemo, C, Mobley, KB, Partridge, C, Jones, AG, 
Ahnesjö IEvidence of paternal nutrient provisioning to embryos in the pipefish Syngnathus typhleJournal of Fish Biology 78: 1725-1737. doi:10.1111/j.1095-8649.2011.02989.x

Leclerc M, Dupont S, Ortega-Martinez O, Hernroth B, Krezdornc N, Rotter B. Evidence of Kappa genes in the sea-star Asterias rubens (Echinoderma). Immunology Letters (2011) 138(2): 197-198.

Li Z, [.. Blomberg A..] et al. (2011). Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology (2011) 29(4):361-367; doi:10.1038/nbt.1832

Martin S, Richier S, Pedrotti ML, Dupont S, Castejon C, Gerakis Y, Kerros ME, Oberhänsli F, Teyssié JL, Jeffree R, Gattuso JP. Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification. Journal of Experimental Biology (2011) 214: 1357-1368 

Mehmood T, Martens H, Sæbø S, Warringer J, Snipen L. Mining for genotype-phenotype relations in Saccharomyces using partial least squares. BMC Informatics. (2011) 12:318
doi:10.1186/1471-2105-12-318

Mobley KB, Kvarnemo C, Ahnesjö I, Partridge C, Berglund A, Jones AG. The effect of maternal body size on embryo survivorship in the broods of pregnant male pipefish. Behavioral Ecology and Sociobiology. (2011) 65: 1169-1177. doi:10.1007/s00265-010-1129-3

Nilsson Jacobi M, Jonsson PR. Optimal networks of nature reserves can be found through eigenvalue perturbation theory of the connectivity matrix. Ecological Applications (2011) 21(5):1861–1870

Nilsson Sköld H, Asplund ME, Woods CA & Bishop JDD. Telomerase deficiency in a colonial ascidian after prolonged asexual propagation. Journal of Experimental Zoology (Mol Dev Evol). (2011) 312:276-283.

Nilsson Sköld H, Obst M. (2011). Potential for clonal animals in longevity and ageing studies. Biogerontology. Invited review. DOI: 10.1007/s10522-011-9333-8

Nilsson Sköld H, Stach T, Bishop JDD, Herbst E, Thorndyke M. Pattern of Cell Proliferation During Budding in the Colonial Ascidian Diplosoma listerianum. Biological Bulletin (2011) 221: 126-136

Panova M, Blakeslee AMH, Miller AW, Mäkinen T, Ruiz GM, Johannesson K, André C. Glacial History of the North Atlantic Marine Snail, Littorina saxatilis, Inferred from Distribution of Mitochondrial DNA Lineages. PLoS ONE 6(3): e17511. doi:10.1371/journal.pone.0017511

Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R , Liti G. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Research (2011) 21(7):1131-1138  
doi: 10.1101/gr.116731.110 

Persson F, Svensson R, Nylund GM, Fredriksson J, Pavia H, Hermansson M.  Ecological role of a seaweed secondary metabolite for a colonizing bacterial community. Biofouling (2011) 27:579-588

Sagebakken G, Ahnesjö I, Braga Gonçalves I, Kvarnemo C. Multiply-mated males show higher embryo survival in a paternally caring fish. Behavioral Ecology (2011) 22:625-629. doi:10.1093/beheco/arr023

Sjögren M, Jonsson PR, Dahlström M, Lundälv T, Burman R, Göransson U, Bohlin L. Two brominated cyclic dipeptides released by the coldwater marine sponge Geodia barretti act in synergy as chemical defense. Journal of Natural products (2011) 74: 449–454

Stumpp M, Dupont S, Thorndyke MC, Melzner F. CO2 induced acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae.
Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology (2011) 160(3):320-330,
doi:10.1016/j.cbpa.2011.06.023

Stumpp M, Wren J, Melzner F, Thorndyke MC, Dupont S. (2011) CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology (2011) 160(3):331-340. 
doi:10.1016/j.cbpa.2011.06.022

Svedäng H, Cardinale M, André C. 2011. Recovery of former fish productivity: the natal homing mechanism puts depleted stocks in a unforeseen deadlock. In: Ecosystem Based Management for Fisheries: An Evolving Perspective 
(Editors: Andrea Belgrano, Charles W. Fowler ) Cambridge University Press. doi:10.1017/CBO9780511973956.011

Ullrich-Lüter EM, Dupont S, Arboleda E, Hausen H, Arnone MI. Unique system of photoreceptors in sea urchin tube feet. Published online in Proceedings of the National Academy of Science of the states of America(PNAS), (2 May 2011); doi: 10.1073/pnas.1018495108. This paper was highlighted in Nature Research Highlights. Nature 473, 126–127 (12 May 2011) doi:10.1038/473126e

Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait Variation in Yeast Is Defined by Population History. PLoS Genetics(2011) 7(6): e1002111. doi:10.1371/journal.pgen.1002111

Wood HL, Spicer JI Lowe DM & Widdicombe S. Ocean warming and acidification; implications for the Arctic brittlestar Ophiocten sericeum. Polar Biology (2011) 34(7): 1033-1044, doi: 10.1007/s00300-011-0963-8 

Yang I, Selander E, Pavia H, John U. Grazer-induced toxin formation in dinoflagellates: a transcriptomic model study. European Journal of Phycology. (2011) 46(1):66-73
doi:10.1080/09670262.2011.552194

 André C, Knutsen H. Development of twelve novel microsatellite loci in the European lobster (Homarus gammarus). Conservation Genetics Resources (2010) 2(1):233-236, doi: 10.1007/s12686-009-9151-3

Biressi A, Zou T, Dupont S, Dahlberg C, Di Benedetto C, Bonasoro F, Thorndyke M & Candia Carnevali MD. Wound-healing and arm regeneration in  Ophioderma longicaudum and Amphiura filiformis (Echinodermata: Ophiuroidea): comparative morphogenesis and histogenesis. Zoomorphology. (2010) 129:1-19.

Carey C, Rengefors K. The cyanobacterium Gloeotrichia echinulata stimulates the growth of other phytoplankton. Journal of Plankton Research. (2010) 32:1349-1354. 

Dupont S, Dorey N, Thorndyke M. (2010). 
What meta-analysis can tell us about vulnerability of marine biodiversity to ocean acidification? Estuarine, Coastal and Shelf Science 89(2010) 182-185

Dupont S, Lundve B, Thorndyke M. (2010). Near future ocean acidification increases growth rate of the lecithotrophic larvae and juvenile of the seastar Crossaster papposus.The Journal of Experimental Zoology (Mol. Dev. Evol.) 314B:[1-8].

Dupont S, Ortega-Martinez O, Thorndyke M. (2010). Impact of near-future ocean acidification on echinoderms.Ecotoxicology, Published online 5 February 2010, DOI: 10.1007/s10646-010-0463-6

Eriksson A, Mehlig B, Panova M, André C, Johannesson K. (2010). Multiple paternity: determining the minimum number of sires of a large brood. Molecular Ecology Resources. 10 (2) p. 282-291. DOI: 10.1111/j.1755-0998.2009.02753.x

Eriksson A, Mehlig B, Rafajlovic M, S. Sagitov S. The total branch length of sample genealogies in populations of variable size. Genetics 186 , 601 (2010)

Figueroa R I, Rengefors K, Bravo I,  Bensch S. From homothally to heterothally; mating preferences and genetic variation within clones of the dinoflagellate Gymnodinium catenatum. Deep Sea Research II. 57:190-198

Forslund H, Wikström S, Pavia H. (2010) Higher resistance to herbivory in introduced compared to native populations of a seaweed. Oecologia 164:833-840. 

Frommel AY, Stiebens V, Clemmesen C, Havenhand JN. (2010) Effect of ocean acidification on marine fish sperm (Baltic Cod: Gadhus morhua). Biogeosciences (2010) 7: 3915-3919. doi:10.5194/bg-7-3915-2010

Godhe A, Härnström K. (2010) Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi. Molecular Ecology, doi: 10.1111/j.1365-294X.2010.04841.x

Goncalves IB, Mobley KB, Ahnesjö I, Sagebakken G, Jones AG, Kvarnemo C. (2010). Reproductive compensation in broad-nosed pipefish females. Proceedings of the Royal Society of London B. doi:10.1098/rspb.2009.2290

Havenhand JN, Styan CA (2010) Reproduction and larvae/spore types. In: Dürr, S. & JC Thomason (eds) Biofouling. Wiley-Blackwell, Oxford. p 1-15.

Hernroth B, Farahani F, Brunborg G, Dupont S, Dejmek A, & Nilsson Sköld H. (2010). Possibility of mixed progenitor cells in sea star arm regeneration. Journal of Experimental Zoology B (Mol Dev Evol). 314B: 457–468.

Johannesson K. (2010) Are we analyzing speciation without prejudice? Annals of the New York Academy of Science 1206 (2010) 143–149. doi: 10.1111/j.1749-6632.2010.05701.x

Johannesson K, Panova M, Kemppainen P, André C, Rolán-Alvarez E, Butlin RK. (2010). Repeated evolution of reproductive isolation in a marine snail - unveiling mechanisms of speciation. Philosophical Transactions of the Royal Society B.365, 1735-1747. DOI: 10.1098/rstb.2009.0256

Johannesson K, Saltin SH, Duranovic I, Havenhand JN, Jonsson PR. (2010). Indiscriminate Males: Mating Behaviour of a Marine Snail Compromised by a Sexual Conflict? PLoS ONE 2010, 5(8), e12005, 7 pp.

Karlson B, Godhe A, Cusack C, Bresnan E (2010) Introduction to methods for quantitative phytoplankton analysis. In: Karlson B, Cusack C, Bresnan E (eds) Microscopic and molecular methods for quantitative phytoplankton analysis. Paris, UNESCO. (IOC Manuals and Guides, no. 55.) (IOC/2010/MG/55), 110 pages

Kemppainen P, Lindskog T, Butlin R, Johannesson K. (2010). Intron sequences of arginine kinase in an intertidal snail suggest an ecotype-specific selective sweep and a gene duplication. Hereditydoi:10.1038/hdy.2010.123, 9 pp.

Kvarnemo, C. (2010). Parental care. In: Evolutionary Behavioral Ecology (Eds D F Westneat & C W Fox). Oxford University Press, New York. 

Kvarnemo C, Svensson O, Manson W (2010). Investment in testes, sperm duct glands and lipid reserves differ between male morphs but not between early and late breeding season in Pomatoschistus minutus. J. Fish. Biol.
Doi: 10.1111/j.1095-8649.2010.02587.x

Larsson LC, Laikre L, André C, Dahlgren TG, Ryman N. (2010) Temporally stable genetic structure of heavily exploited Atlantic herring (Clupea harengus) in Swedish waters. Heredity, 104:40-51.

Lind U, Alm Rosenblad M, Hasselberg Frank L, Falkbring S, Brive L, Laurila JM, Pohjanoksa K, Vuorenpää A, Kukkonen JP, Gunnarsson L, Scheinin M, Lindblad L, Blomberg A. (2010) Octopamine receptors from the barnacle Balanus improvisus are activated by the α2-adrenoceptor agonist medetomidine.Molecular Pharmacology 2010 Aug;78(2):237-48.

Nilsson Sköld H, Svensson PA & Zejlon C. (2010). The capacity for internal colour change is related to body transparency in fishes. Pigment Cell Melanoma Research. 23; 292–295.

Nylund GM, Persson F, Lindegarth M, Cervin G, Hermansson M, Pavia H. (2010) The red alga Bonnemaisonia asparagoides regulates epiphytic bacterial abundance and community composition by chemical defence. FEMS Microbiology Ecology 71: 84-93.

Panova M, Boström J, Hovfing T, Areskoug T, Eriksson A, Mehlig B, Mäkinen T, André C, Johannesson K. (2010) Extreme female promiscuity in a non-social invertebrate species. PLoS ONE, 5(3):e9640. doi:10.1371/journal.pone.0009640

Rehnstam-Holm A-S, Godhe A, Härnström K, Raghunath PR, Saravanan V, Kronkvist B, Karunasagar I, Karunasagar I. (2010). Association between Phytoplankton and Vibrio spp along the southwest coast of India- a mesocosm experiment. Aquatic Microbial Ecology, 58:127-139.

Rodrigues-Grana L, Calliari D, Tiselius P, Hansson B & Nilsson Sköld H. (2010). Gender differences and non-mendelian inheritance of oxidative damage in marine copepods. Marine Ecology Progress Series. 401: 1-13. Selected as Feature Article.

Sagebakken G, Ahnesjö I, Mobley KB, Gonçalves IB, Kvarnemo C. (2010) Brooding fathers, not siblings, take up nutrients from embryos. Proceedings of the Royal Society of London B. 277:971-977. 
doi: 10.1098/rspb.2009.1767

Saravanan V, Godhe A. (2010) Genetic heterogeneity and physiological variation among seasonally separated clones of Skeletonema marinoi (Bacillariophyceae) in the Gullmar Fjord, Sweden. European Journal of Phycology, 45:2 177-190

Svedäng H, André C, Jonsson P, Elfman M, Limburg KE. 2010. Migratory behaviour and otolith chemistry suggest fine-scale sub-population structure within a genetically homogenous Atlantic Cod population. Environmental Biology on Fishes, DOI 10.1007/s10641-010-9669-y

Svensson CJ, Eriksson A, Härkönen T, Harding KC. Detecting Density Dependence in Recovering Seal Populations. Ambio (2010) 40:52-59.

Svensson O, Lissåker M, Mobley KB (2010). Offspring recognition and the influence of clutch size on nest fostering among male sand gobies, Pomatoschistus minutus. Behav. Ecol. Sociobiol. Doi:10.1007/s00265-010-0947-7.

Wood HL, Spicer JI Lowe DM, Widdicombe S. Interaction of ocean acidification and temperature; the high cost of survival in the brittlestar Ophiura ophiura. Marine Biology (2010) 157: 2001-2013

Almany G [..Godhe A...] et al.  (2009) Permanent Genetic Resources added to Molecular Ecology Resources Database. 1 May 2009-31 July 2009. Molecular Ecology Resources, 9:1460-1466. doi:10.1111/j.1755-0998.2009.02759.x

Andersen O, Wetten OF, De Rosa MC, André C, Alinovi CC, Colafranceschi M, Brix O, Colosimo A. (2009) Haemoglobin polymorphisms affect the oxygen-binding properties in Atlantic cod populations. Proceedings of the Royal Society B-Biological Sciences, 276 (1658): 833-841. doi:10.1098/rspb.2008.1529  PubMed 

Aspengren S, Sköld HN & Wallin M. (2009). Different strategies for color change. Cellular and Molecular Life Sciences 66:187-91. Invited review. doi: 10.1007/s00018-008-8541-0 

Biressi A, Zou T, Dupont S, Dahlberg C, Di Benedetto C, Bonasoro F, Thorndyke M, Candia Carnevali MD. (2009) Wound-healing and arm regeneration in two brittlestar species (Echinodermata: Ophiuroidea): comparative morphogenesis and histogenesis. Zoomorphology. doi:10.1007/s00435-009-0095-7

Dahlberg C, Auger H, Dupont S, Sasakura Y, Thorndyke M, Joly JS. (2009) Refining the model system of central nervous system regeneration in Ciona intestinalis. PLoS One. 4(2): e4458. doi:10.1371/journal.pone.0004458. 

Dupont S, Le Bon O, Linotte S. (2009) Selective pressure in Academic environment - Are you genetically determined to be a phD student in biology? Acta Psychiatrica Belgica. 109: 25-28.

Dupont S & Thorndyke M (2009) Ocean Acidification and its impact on the early life-history stages of marine animals. CIESM, 2008. Impacts of acidification on biological, chemical and physical systems in the Mediterranean and Black Seas. N° 36 in CIESM Workshop Monographs [F. Briand Ed.], Monaco. pp. 89-98.Download in pdf   Dupont S & Thorndyke M. (2009) Impact of CO2-driven ocean acidification on invertebrates early life-history – What we know, what we need to know and what we can do. Biogeoscience. 6, 3109-3131. Discussion Paper.

Dupont S, Thorndyke W, Thorndyke M, Burke R. (2009) Neural development of the brittlestar Amphiura filiformis. Development, Genes and Evolution. 219: 159-166. 

Eriksson A, Mahjani B, Mehlig B. Sequential Markov coalescent algorithms for populationmodels with demographic structure. Theoretical Population Biology (2009) 76, 84.

Fenandez-Ricaud L, Dalevi D, Blomberg A, Nerman, O. (2009) Testing of Chromosomal Clumping of Gene Properties. Statistical Applications in Genetics and Molecular Biology, 8:19

Gaggiotti O, Bekkevold D, Jørgensen H, Foll M, Carvalho G, André C, Ruzzante DE. (2009) Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic Herring as a case study. Evolution, 63: 2939–29.

Geurden I, Jutfelt F, Sundell K. (2009) A vegetable oil feeding history affects digestibility and intestinal fatty acid uptake in juvenile rainbow trout Oncorhynchus mykiss. Comparative Biochemistry and Physiology A, 152:552-559.

Gombault A, Warringer J, Caesar R, Godin F, Vallée B, Doudeau M, Chautard H, Blomberg A, Bénédetti H. (2009) A phenotypic study of TFS1 mutants differentially altered in the inhibition of Ira2p or CPY. FEMS Yeast Research, 9:867

Havenhand JN, Schlegel P. (2009) Near-future levels of ocean acidification do not affect sperm motility and fertilization kinetics in the oyster Crassostrea gigas. Biogeosciences, 6, 3009–3015.

Hillebrand H, Gamfeldt L, Jonsson PR, Matthiessen B. (2009) Consumer diversity indirectly changes prey nutrient content. Marine Ecology Progress Series, 380: 33-41

Härnström K, Karunasagar I, Godhe A. (2009) Phytoplankton species assemblages and their relationship to hydrographic factors—a study at the old port in Mangalore, coastal Arabian Sea. Indian Journal of Marine Sciences, 38(2): 224-235.

Jagers P, Harding KC . (2009) Viability of small populations experiencing recurring catastrophes. Mathematical Population Studies, 16(3):177-198(22).

Johannesson K. (2009) Inverting the null-hypothesis of speciation: a marine snail perspective. Evolutionary Ecology, 23 (1): 5-16.

Jonsson PR, Pavia H, Toth G. (2009) Formation of harmful algal blooms cannot be explained by allelopathic interactions. Proceeding of National Academy of Science 106:11177-11182.

Kemppainen P, Panova M, Hollander J, Johannesson K. (2009) Complete lack of mitochondrial divergence between two species of NE Atlantic marine intertidal gastropods. Journal of Evolutionary Biology, Vol 22(10), 2000-2011.

Krantz M, Ahmadpour D, Ottosson L-G, Warringer J, Nordlander B, Blomberg A, Hohmann S, Kitano H.(2009) Robustness and fragility in the yeast High Osmolarity signal transduction pathway. Molecular Systems Biology, 5:281

Kohler A, Böcker U, Sørhus I, Warringer J, Blomberg A, Omholt SW, Martens, H. (2009) Reducing inter-replicate variation in FTIR spectrosocopy by extended multiplicative signal correction (EMSC). Applied Spectroscopy, 63:296

Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJT, van Oudenaarden A, Barton DBH, Bailes E, Nguyen AN, Jones M, Quail MA, Goodhead A, Sims S, Smith F, Blomberg A, Durbin R, Louis EJ. Population genomics of domestic and wild yeasts. Nature (2009) 458: 337-341
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Logg K, Bodvard K, Blomberg A, Käll, M. (2009) Investigations on light induced stress in fluorescence microscopy using nuclear localization of the transcription factor Msn2p as reporter. FEMS Yeast Research, 9:875

Melzner F, Gutowska MA, Langenbuch M, Dupont S, Lucassen M, Thorndyke MC, Bleich M, Pörtner HO. (2009) Physiological basis for high CO2 tolerance in marine ectothermic animals: pre-adaptation through lifestyle and ontogeny? Biogeosciences, 6, 2313-2331.

Mertens, K.N., [..Godhe A...] et al. (2009) Lingulodinium machaerophorum process length variation in surface sediments. Marine Micropaleontology, 70: 54-69.

Nilsson Sköld, H., Obst, M., Sköld, M. & Åkesson, B. (2009). Stem cells in asexual reproduction of marine invertebrates. Chapter 5. In Stem Cells In Marine Animals Eds: B. Rinkevich, V Matranga. Springer-Verlag, Berlin, Germany. p. 105-138. Invited review.

Nyqvist A, André C, Gullstrom M, Baden SP, Aberg P. (2009) Dynamics of Seagrass Meadows on the Swedish Skagerrak Coast. AMBIO, 38 (2): 85-88

Olsson KH, Kvarnemo C, Svensson O. (2009). Relative costs of courtship behaviours in nest-building sand gobies. Animal Behaviour 77:541-546.

Partridge C, Ahnesjö I, Kvarnemo C, Mobley KB, Berglund A, Jones AG. (2009). The effect of perceived female parasite load on postcopulatory male choice in a sex-role-reversed pipefish. Behavioral Ecology and Sociobiology 63: 345-454. doi: 10.1007/s00265-008-0668-3

Pereyra RT, Bergstrom L, Kautsky L, Johannesson, K. (2009) Rapid speciation in a newly opened postglacial marine environment, the Baltic Sea. BMC Evolutionary Biology, 9:70.

Ring A-K, Knutsen H, Fiani D, Hoelzel AR, André C. (2009) Development of ten microsatellite loci in the ling (Molva molva). Molecular Ecology Resources, 9:1401-1403.

Sadedin S, Hollander J, Panova M, Johannesson K, Gavrilets S. (2009) Case studies and mathematical models of ecological speciation. 3: Ecotype formation in a Swedish snail. Molecular Ecology, 18, 4006-4023.

Serrão, EA, Havenhand JN (2009) Fertilization strategies In: M.Wahl (ed) Marine Hard Bottom Communities. Springer, Heidelberg. p 149-164.

Sundh H, Olsen RE, Fridell F, Koestan G, Evensen Ø, Glette J, Taranger GL, Myklebust R, Sundell K.(2009) The effect of hyperoxygenation and reduced flow in freshwater and subsequent IPN virus challenge in seawater, on the intestinal barrier integrity in Atlantic salmon (Salmo salar L.). Journal of Fish Disease. 32:687-698.

Svensson JR, Lindegarth M, Pavia H. (2009) Equal rates of disturbance cause different patterns of diversity. Ecology, 90(2): 496-505.

Svensson CJ, Pavia H, Aberg P. (2009) Robustness in life history of the brown seaweed Ascophyllum nodosum(Fucales, Phaeophyceae) across large scales: effects of spatially and temporally induced variability on population growth. Marine Biology, 156 (6): 1139-1148.

Taylor R, Abrahamsson K, Godhe A,  Wängberg S-Å. (2009) Seasonal variability in polyunsaturated aldehyde production potential between strains of Skeletonema marinoi (Bacillariophyceae). Journal of Phycology, 45: 46-53.

Ungfors A, McKeown NJ, Shaw PW, André C. (2009) Lack of spatial genetic variation in the edible crab (Cancer pagurus) in the Kattegat-Skagerrak area. ICES Journal of Marine Research, 66: 462-469.

Wilson KH. (2009) The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: evolution of neurotrophin signaling components and related proteins in the bilateria. BMC Evolutionary Biology, Oct 6;9:243.

Wood HL, Spicer JI & Widdicombe S. The influence of hypercapnia and the infaunal brittlestar Amphiura filiformis on sediment nutrient flux – will ocean acidification affect nutrient exchange? Biogeosciences (2009) 6: 2015-2024

Yilmaz A, [..Dupont S...] et al. (2009) Impacts of acidification on biological, chemical and physical systems in the Mediterranean and Black Seas. In Briand F (ed) N° 36 in CIESM Workshop Monographs. CIESM, Monaco. pp. 5-19.

Åberg P, Svensson CJ, Caswell H, Pavia H. (2009) Environment-specific elasticity and sensitivity analysis of the stochastic growth rate. Ecological Modelling 220: 605-610

Ahnesjö I, Forsgren E, Kvarnemo C. (2008). Variation in sexual selection in fishes. In: Fish Behaviour (Eds Magnhagen, C, Braithwaite, VA, Forsgren, E & BG Kapoor). Enfield, NH: Science Publishers Inc. doi:10.1201/b10757-11

Aspengren S, Hedberg D, Sköld HN & Wallin M. (2008). New insights into melanosome transport in vertebrate pigment cells. International Review of Cell and Molecular Biology, 272:245-302. Invited review.

Bergkvist J, Selander E, Pavia H. (2008) Induction of toxin production in dinoflagellates: the grazer makes a difference. Oecologia doi: 10.1007/s00442-008-0981-6

Dupont S, Havenhand J, Thorndyke W, Peck L, Thorndyke MC. (2008) Near-future level of CO2-driven ocean acidification radically affects larval survival and development in the brittlestar Ophiothrix fragilis. Marine Ecology Progress Series, 373: 285-294.

Godhe A, Asplund M, Härnström K, Saravanan V, Tyagi A, Karunasagar I. (2008) Quantifying diatom and dinoflagellate biomass in coastal marine sea water samples by real-time PCR. Applied and Environmental Microbiology, 74(23): 7174-7182.

Havenhand JN, Buttler FR, Thorndyke MC, Williamson JE. (2008) Near-future levels of ocean acidification reduce fertilization success in a sea urchin. Current Biology, 18 (15): R651-R652.

Holm K, Dupont S, Sköld H, Stenius A, Thorndyke M, Henroth B. (2008) Induced cell proliferation in putative haematopoietic tissues of the sea star, Asterias rubens (L.) Journal of Experimental Biology, 211: 2551-2558.

Johannesson K, Havenhand JN, Jonsson PR, Lindegarth M, Sundin A, Hollander J. (2008). Male discrimination of female mucous trails permits assortative mating in marine snail species. Evolution, 62 (12): 3178-3184. PubMed

Lissåker M, Svensson O. (2008) Cannibalize or care? The role of perceived paternity in the sand goby, Pomatoschistus minutus. Behavioral Ecology and Sociobiology, 62:1467-1475.

Mäkinen T, Panova M, Appelqvist C, Tatarenko A, Johannesson K, André C. 2008. Genetic differentiation on multiple spatial scales in an ecotype-forming marine snail with limited dispersal: Littorina saxatilis. Biological Journal of the Linnean Society. 94: 31-40

Nylund GM, Cervin C, Persson F, Hermansson M, Steinberg PD, Pavia H. (2008) Seaweed defence against bacteria: a poly-brominated 2-heptanone from the red alga Bonnemaisonia hamifera inhibits bacterial colonization. Marine Ecology Progress Series, 369: 39-50.

Olsen RE, Sundell K, Ringø E, Myklebust R, Hemre G-I, Hansen T, Karlsen Ø. (2008) The acute stress response in fed and food deprived Atlantic cod, Gadus morhua L.. Aquaculture 280:232-241.

Oweson C, Sköld H, Pinsino A, Matranga V, Hernroth B. (2008). Manganese effects on the haematopoiesis ofAsterias rubens. Aquatic toxicology 89: 75-81

Panova M, Mäkinen T, Fokin M, André C, Johannesson K. Microsatellite cross-species amplification in the genus Littorina and detection of null alleles in Littorina saxatilis. Journal of Molluscan Studies. (2008) 74: 111–117.

Roy M, Harding KC and Holt RD. (2008) Generalizing Levins metapopulation model in explicit space: models of intermediate complexity. Journal of Theoretical Biology, 255(1): 152-161. doi:10.1016/j.jtbi.2008.07.022 

Selander E, Cervin G, Pavia H. (2008) The effect of nitrate and phosphate on grazer induced paralytic shellfish toxin formation in Alexandrium minutum. Limnology and Oceanography, 53:523-530

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