Jonas Nilsson
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A glycomic workflow for LC-MS/MS analysis of urine glycosaminoglycan biomarkers in
mucopolysaccharidoses
Jonas Nilsson, Andrea Persson, Egor Vorontsov, Mahnaz Nikpour, Fredrik Noborn, Göran Larson, Maria K. Blomqvist
Glycoconjugate Journal - 2023 -
Site-specific glycosylation of proteoglycans: A revisited frontier in proteoglycan
research
Fredrik Noborn, Jonas Nilsson, Göran Larson
Matrix Biology - 2022 -
Glycoproteomic and Phenotypic Elucidation of B4GALNT2 Expression Variants in the SID Histo-Blood Group
System
L. Stenfelt, Jonas Nilsson, A. Hellberg, Y. W. Liew, J. Morrison, Göran Larson, M. L. Olsson
International Journal of Molecular Sciences - 2022 -
A Glycoproteomic Approach to Identify Novel
Proteoglycans
Fredrik Noborn, Mahnaz Nikpour, Andrea Persson, Carina Sihlbom, Jonas Nilsson, Göran Larson
Glycosaminoglycans. Methods in Molecular Biology, vol 2303. Balagurunathan K., Nakato H., Desai U., Saijoh Y. (eds) - 2022 -
Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide
analysis
R. Kawahara, A. Chernykh, K. Alagesan, M. Bern, W. Q. Cao, R. J. Chalkley, K. Cheng, M. S. Choo, N. Edwards, R. Goldman, M. Hoffmann, Y. W. Hu, Y. F. Huang, J. Y. Kim, D. Kletter, B. Liquet, M. Q. Liu, Y. Mechref, B. Meng, S. Neelamegham, T. Nguyen-Khuong, Jonas Nilsson, A. Pap, G. W. Park, B. L. Parker, C. L. Pegg, J. M. Penninger, T. K. Phung, M. Pioch, E. Rapp, E. Sakalli, M. Sanda, B. L. Schulz, N. E. Scott, G. Sofronov, J. Stadlmann, S. Y. Vakhrushev, C. M. Woo, H. Y. Wu, P. Y. Yang, W. T. Ying, H. Zhang, Y. Zhang, J. F. Zhao, J. Zaia, S. M. Haslam, G. Palmisano, J. S. Yoo, Göran Larson, K. H. Khoo, K. F. Medzihradszky, D. Kolarich, N. H. Packer, M. Thaysen-Andersen
Nature Methods - 2021 -
Proteoglycan profiling of human, rat and mouse insulin-secreting
cells
Mahnaz Nikpour, Jonas Nilsson, Andrea Persson, Fredrik Noborn, Egor Vorontsov, Göran Larson
Glycobiology - 2021 -
Expanding the Chondroitin Sulfate Glycoproteome - But How
Far?
Fredrik Noborn, Mahnaz Nikpour, Andrea Persson, Jonas Nilsson, Göran Larson
Frontiers in cell and developmental biology - 2021 -
Histo-blood group antigens of glycosphingolipids predict susceptibility of human intestinal enteroids to norovirus
infection
Inga Rimkute, K. Thorsteinsson, Marcus Henricsson, V. R. Tenge, X. M. Yu, S. C. Lin, K. Haga, R. L. Atmar, Nils Y Lycke, Jonas Nilsson, M. K. Estes, M. Bally, Göran Larson
Journal of Biological Chemistry - 2020 -
An affinity chromatography and glycoproteomics workflow to profile the chondroitin sulfate proteoglycans that interact with malarial VAR2CSA in the placenta and in
cancer
A. G. Toledo, J. Pihl, C. B. Spliid, Andrea Persson, Jonas Nilsson, M. A. Pereira, T. Gustavsson, S. Choudhary, H. Z. Oo, P. C. Black, M. Daugaard, J. D. Esko, Göran Larson, A. Salanti, T. M. Clausen
Glycobiology - 2020 -
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical
Methods
M. L. A. De Leoz, D. L. Duewer, A. Fung, L. Liu, H. K. Yau, O. Potter, G. O. Staples, K. Furuki, R. Frenkel, Y. L. Hu, Z. Sosic, P. Q. Zhang, F. Altmann, C. Grunwald-Grube, C. Shao, J. Zaia, W. Evers, S. Pengelley, D. Suckau, A. Wiechmann, A. Resemann, W. Jabs, A. Beck, J. W. Froehlich, C. C. Huang, Y. Li, Y. M. Liu, S. W. Sun, Y. J. Wang, Y. Seo, H. J. An, N. C. Reichardt, J. E. Ruiz, S. Archer-Hartmann, P. Azadi, L. Bell, Z. Lakos, Y. M. An, J. F. Cipollo, M. Pucic-Bakovic, J. Stambuk, G. Lauc, X. Li, P. G. Wang, A. Bock, R. Hennig, E. Rapp, M. Creskey, T. D. Cyr, M. Nakano, T. Sugiyama, P. K. A. Leung, P. Link-Lenczowski, J. Jaworek, S. Yang, H. Zhang, T. Kelly, S. Klapoetke, R. Cao, J. Y. Kim, H. K. Lee, J. Y. Lee, J. S. Yoo, S. R. Kim, S. K. Suh, N. de Haan, D. Falck, G. S. M. Lageveen-Kammeijer, M. Wuhrer, R. J. Emery, R. P. Kozak, L. P. Liew, L. Royle, P. A. Urbanowicz, N. H. Packer, X. M. Song, A. Everest-Dass, E. Lattova, S. Cajic, K. Alagesan, D. Kolarich, T. Kasali, V. Lindo, Y. Chen, K. Goswami, B. Gau, R. Amunugama, R. Jones, C. J. M. Stroop, K. Kato, H. Yagi, S. Kondo, C. T. Yuen, A. Harazono, X. F. Shi, P. E. Magnelli, B. T. Kasper, L. Mahal, D. J. Harvey, R. O'Flaherty, P. M. Rudd, R. Saldova, E. S. Hecht, D. C. Muddiman, J. C. Kang, P. Bhoskar, D. Menard, A. Saati, C. Merle, S. Mast, S. Tep, J. Truong, T. Nishikaze, S. Sekiya, A. Shafer, S. Funaoka, M. Toyoda, P. de Vreugd, C. Caron, P. Pradhan, N. C. Tan, Y. Mechref, S. Patil, J. S. Rohrer, R. Chakrabarti, D. Dadke, M. Lahori, C. X. Zou, C. Cairo, B. Reiz, R. M. Whittal, C. B. Lebrilla, L. R. Wu, A. Guttman, M. Szigeti, B. G. Kremkow, K. H. Lee, C. Sihlbom, Barbara Adamczyk, Chunsheng Jin, Niclas G. Karlsson, Jessica Örnros, Göran Larson, Jonas Nilsson, B. Meyer, A. Wiegandt, E. Komatsu, H. Perreault, E. D. Bodnar, N. Said, Y. N. Francois, E. Leize-Wagner, S. Maier, A. Zeck, A. J. R. Heck, Y. Yang, R. Haselberg, Y. Q. Yu, W. Alley, J. W. Leone, H. Yuan, S. E. Stein
Molecular & Cellular Proteomics - 2020 -
Glycosaminoglycan Domain Mapping of Cellular Chondroitin/Dermatan
Sulfates
Andrea Persson, Egor Vorontsov, Göran Larson, Jonas Nilsson
Scientific Reports - 2020 -
Chondroitin sulfate proteoglycan Windpipe modulates Hedgehog signaling in
Drosophila
M. Takemura, Fredrik Noborn, Jonas Nilsson, N. Bowden, E. Nakato, S. Baker, T. Y. Su, Göran Larson, H. Nakato
Molecular Biology of the Cell - 2020 -
Identification of a non-canonical chondroitin sulfate linkage region
trisaccharide
Andrea Persson, Jonas Nilsson, Egor Vorontsov, Fredrik Noborn, Göran Larson
Glycobiology - 2019 -
Synthetic standard aided quantification and structural characterization of amyloid-beta glycopeptides enriched from cerebrospinal fluid of Alzheimer's disease
patients
Jonas Nilsson, Gunnar Brinkmalm, S. Ramadan, L. Gilborne, Fredrik Noborn, Kaj Blennow, Anders Wallin, Johan Svensson, M. A. Abo-Riyas, X. F. Huang, Göran Larson
Scientific Reports - 2019 -
Recombinant Glycoprotein E of Varicella Zoster Virus Contains Glycan-Peptide Motifs That Modulate B Cell Epitopes into Discrete Immunological
Signatures
Rickard Nordén, Jonas Nilsson, Ebba Samuelsson, C. Risinger, C. Sihlbom, O. Blixt, Göran Larson, Sigvard Olofsson, Tomas Bergström
International Journal of Molecular Sciences - 2019 -
LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan
modifications
Andrea Persson, Alejandro Gomez Toledo, Egor Vorontsov, Waqas Nasir, D. Willen, Fredrik Noborn, U. Ellervik, K. Mani, Jonas Nilsson, Göran Larson
Journal of Biological Chemistry - 2018 -
Expanding the chondroitin glycoproteome of Caenorhabditis
elegans.
Fredrik Noborn, Alejandro Gomez Toledo, Waqas Nasir, Jonas Nilsson, Tabea Dierker, Lena Kjellén, Göran Larson
The Journal of biological chemistry - 2018 -
Characterization of Glycan Structures of Chondroitin Sulfate-Glycopeptides Facilitated by Sodium Ion-Pairing and Positive Mode
LC-MS/MS.
Jonas Nilsson, Fredrik Noborn, Alejandro Gomez Toledo, Waqas Nasir, Carina Sihlbom, Göran Larson
Journal of the American Society for Mass Spectrometry - 2017 -
Liquid chromatography-tandem mass spectrometry-based fragmentation analysis of
glycopeptides
Jonas Nilsson
Glycoconjugate Journal - 2016 -
Distinctive MS/MS Fragmentation Pathways of Glycopeptide-Generated Oxonium Ions Provide Evidence of the Glycan
Structure.
Jin Yu, Manuel Schorlemer, Alejandro Gomez Toledo, Christian Pett, Carina Sihlbom, Göran Larson, Ulrika Westerlind, Jonas Nilsson
Chemistry (Weinheim an der Bergstrasse, Germany) - 2016 -
Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human
cancers.
Babak Alaei-Mahabadi, Joydeep Bhadury, Joakim Karlsson, Jonas Nilsson, Erik Larsson
Proceedings of the National Academy of Sciences of the United States of America - 2016 -
Site-specific identification of heparan and chondroitin sulfate glycosaminoglycans in hybrid
proteoglycans
Fredrik Noborn, Alejandro Gomez Toledo, Anders Green, Waqas Nasir, Carina Sihlbom, Jonas Nilsson, Göran Larson
Scientific Reports - 2016 -
SweetNET: A Bioinformatics Workflow for Glycopeptide MS/MS Spectral
Analysis
Waqas Nasir, Alejandro Gomez Toledo, Fredrik Noborn, Jonas Nilsson, M. X. Wang, N. Bandeira, Göran Larson
Journal of Proteome Research - 2016 -
O-linked glycosylation of the mucin domain of the herpes simplex virus type 1 specific glycoprotein gC-1 is temporally regulated in a seed-and-spread
manner.
Rickard Nordén, Adnan Halim, Kristina Nyström, Eric P Bennett, Ulla Mandel, Sigvard Olofsson, Jonas Nilsson, Göran Larson
The Journal of biological chemistry - 2015 -
Positive mode LC-MS/MS analysis of chondroitin sulfate modified glycopeptides derived from light and heavy chains of the human inter-α-trypsin inhibitor
complex
Alejandro Gomez Toledo, Jonas Nilsson, Fredrik Noborn, Carina Sihlbom, Göran Larson
Molecular and Cellular Proteomics - 2015 -
Effect of Increased Radiotoxicity on Survival of Patients with Non-small Cell Lung Cancer Treated with Curatively Intended
Radiotherapy.
Georg Holgersson, Stefan Bergström, Per Liv, Jonas Nilsson, Per Edlund, Carl Blomberg, Jan Nyman, Signe Friesland, Simon Ekman, Thomas Asklund, Roger Henriksson, Michael Bergqvist
Anticancer research - 2015 -
SorLA CR-Domains Protect the Amyloid Precursor Protein against
Processing.
Arnela Mehmedbasic, Sofie K Christensen, Jonas Nilsson, Ulla Rüetschi, Camilla Gustafsen, Annemarie Svane Aavild Poulsen, Rikke W Rasmussen, Anja N Fjorback, Göran Larson, Olav M Andersen
The Journal of biological chemistry - 2015 -
Identification of chondroitin sulfate linkage region glycopeptides reveals prohormones as a novel class of
proteoglycans.
Fredrik Noborn, Alejandro Gomez Toledo, Carina Sihlbom, Johan Lengqvist, Erik Fries, Lena Kjellén, Jonas Nilsson, Göran Larson
Molecular & cellular proteomics : MCP - 2015 -
LC-MS/MS characterization of combined glycogenin-1 and glycogenin-2 enzymatic activities reveals their self-glucosylation
preferences.
Johanna Nilsson, Adnan Halim, Erik Larsson, Ali-Reza Moslemi, Anders Oldfors, Göran Larson, Jonas Nilsson
Biochimica et biophysica acta - 2014 -
The effects of age on circulating vascular markers and cardiac prognostic markers, before and after 2 months home-based high-frequency exercise training in patients with stable coronary artery
disease
Smita DuttaRoy, Debashish Banerjee, Jonas Nilsson, Ola Hammarsten, Åsa Cider, Maria Bäck, Bertil Wennerblom, Mats Börjesson
European Heart Journal. European Society of Cardiology, 30 August - 3 September 2014, Barcelona - 2014 -
Automatic method for improved detection rate and visualization of liver uptake foci in diagnostic 111In-octreotide SPECT/CT
investigations
Tobias Magnander, Emma Wikberg, Jonas Nilsson, Johanna Svensson, Peter Gjertsson, Bo Wängberg, Magnus Båth, Peter Bernhardt
XI Congress of World Federation of Nuclear Medicine and Biology, 27-31 August 2014, Cancun, Mexico - 2014 -
Assignment of Saccharide Identities through Analysis of Oxonium Ion Fragmentation Profiles in LC-MS/MS of
Glycopeptides.
Adnan Halim, Ulrika Westerlind, Christian Pett, Manuel Schorlemer, Ulla Rüetschi, Gunnar Brinkmalm, Carina Sihlbom, Johan Lengqvist, Göran Larson, Jonas Nilsson
Journal of proteome research - 2014 -
Synthesis aided structural determination of amyloid-beta(1-15) glycopeptides, new biomarkers for Alzheimer's
disease
P. Wang, Jonas Nilsson, Gunnar Brinkmalm, Göran Larson, X. F. Huang
Chemical Communications - 2014 -
Parvovirus B19 VLP recognizes globoside in supported lipid
bilayers
Waqas Nasir, Jonas Nilsson, Sigvard Olofsson, Marta Bally, Gustaf E Rydell
Virology - 2014 -
Bioinspired Exosome-Mimetic Nanovesicles for Targeted Delivery of Chemotherapeutics to Malignant
Tumors.
Su Chul Jang, Oh Youn Kim, Chang Min Yoon, Dong-Sic Choi, Tae-Young Roh, Jaesung Park, Jonas Nilsson, Jan Lötvall, Yoon-Keun Kim, Yong Song Gho
ACS nano - 2013 -
Sialic acid capture-and-release and LC-MSn analysis of
glycopeptides
Jonas Nilsson, Göran Larson
Methods in Molecular Biology - 2013 -
Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study
2012
N. Leymarie, P. J. Griffin, K. Jonscher, D. Kolarich, R. Orlando, M. McComb, J. Zaia, J. Aguilan, W. R. Alley, F. Altmann, L. E. Ball, L. Basumallick, C. R. Bazemore-Walker, H. Behnken, M. A. Blank, K. J. Brown, S. C. Bunz, C. W. Cairo, J. F. Cipollo, R. Daneshfar, H. Desaire, R. R. Drake, E. P. Go, R. Goldman, C. Gruber, Adnan Halim, Y. Hathout, P. J. Hensbergen, D. M. Horn, D. Hurum, W. Jabs, Göran Larson, M. Ly, B. F. Mann, K. Marx, Y. Mechref, B. Meyer, U. Moginger, C. Neususs, Jonas Nilsson, M. V. Novotny, J. O. Nyalwidhe, N. H. Packer, P. Pompach, B. Reiz, A. Resemann, J. S. Rohrer, A. Ruthenbeck, M. Sanda, J. M. Schulz, U. Schweiger-Hufnagel, Carina Sihlbom, E. Song, G. O. Staples, D. Suckau, H. X. Tang, M. Thaysen-Andersen, R. I. Viner, Y. M. An, L. Valmuv, Y. Wada, M. Watson, M. Windwarder, R. Whittal, M. Wuhrer, Y. Y. Zhu, C. X. Zou
Molecular & Cellular Proteomics - 2013 -
Involvement of viral glycoprotein gC-1 in expression of the selectin ligand sialyl-Lewis X induced after infection with herpes simplex virus type
1.
Rickard Nordén, Kristina Nyström, Beata Adamiak, Adnan Halim, Jonas Nilsson, Göran Larson, Edward Trybala, Sigvard Olofsson
APMIS : acta pathologica, microbiologica, et immunologica Scandinavica - 2013 -
Targeting the
glycoproteome.
Jonas Nilsson, Adnan Halim, Ammi Grahn, Göran Larson
Glycoconjugate journal - 2013 -
LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid
glycoproteins.
Adnan Halim, Ulla Rüetschi, Göran Larson, Jonas Nilsson
Journal of Proteome Research - 2013 -
An online nano-LC-ESI-FTICR-MS method for comprehensive characterization of endogenous fragments from amyloid β and amyloid precursor protein in human and cat cerebrospinal
fluid.
Gunnar Brinkmalm, Erik Portelius, Annika Öhrfelt, Niklas Mattsson, Rita Persson, Mikael K Gustavsson, Charles H Vite, Johan Gobom, Jan-Eric Månsson, Jonas Nilsson, Adnan Halim, Göran Larson, Ulla Rüetschi, Henrik Zetterberg, Kaj Blennow, Ann Brinkmalm-Westman
Journal of mass spectrometry : JMS - 2012 -
Molecular pathogenesis of a new glycogenosis caused by a glycogenin-1
mutation.
Johanna Nilsson, Adnan Halim, Ali-Reza Moslemi, Anders Pedersen, Jonas Nilsson, Göran Larson, Anders Oldfors
Biochimica et biophysica acta - 2012 -
Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and
ECD.
Adnan Halim, Jonas Nilsson, Ulla Rüetschi, Camilla Hesse, Göran Larson
Molecular & cellular proteomics : MCP - 2012 -
O-Mannose and O-N-acetyl galactosamine glycosylation of mammalian alpha-dystroglycan is conserved in a region-specific
manner
Alejandro Gomez Toledo, M. Raducu, J. Cruces, Jonas Nilsson, Adnan Halim, Göran Larson, Ulla Rüetschi, Ammi Grahn
Glycobiology - 2012 -
Site-specific characterization of threonine, serine, and tyrosine glycosylations of amyloid precursor protein/amyloid {beta}-peptides in human cerebrospinal
fluid.
Adnan Halim, Gunnar Brinkmalm, Ulla Rüetschi, Ann Brinkmalm-Westman, Erik Portelius, Henrik Zetterberg, Kaj Blennow, Göran Larson, Jonas Nilsson
Proceedings of the National Academy of Sciences of the United States of America - 2011 -
Characterization of site-specific O-glycan structures within the mucin-like domain of alpha-dystroglycan from human skeletal
muscle.
Johanna Nilsson, Jonas Nilsson, Göran Larson, Ammi Grahn
Glycobiology - 2010 -
Human noroviruses recognize sialyl Lewis x
neoglycoprotein.
Gustaf E Rydell, Jonas Nilsson, Jesus Rodriguez-Diaz, Nathalie Ruvoën-Clouet, Lennart Svensson, Jacques Le Pendu, Göran Larson
Glycobiology - 2009 -
Glycobiology and
cancer
Ammi Grahn, Jonas Nilsson, Göran Larson
Encyclopedia of Cancer - 2009 -
Enrichment of glycopeptides for glycan structure and attachment site
identification.
Jonas Nilsson, Ulla Rüetschi, Adnan Halim, Camilla Hesse, Elisabet Carlsohn, Gunnar Brinkmalm, Göran Larson
Nature methods - 2009 -
Norwalk virus-like particles bind specifically to A, H and difucosylated Lewis but not to B histo-blood group active
glycosphingolipids.
Jonas Nilsson, Gustaf E Rydell, Jacques Le Pendu, Göran Larson
Glycoconjugate journal - 2009 -
Establishment and validation of an in vitro co-culture model to study the interactions between bone and prostate cancer
cells.
Annika Nordstrand, Jonas Nilsson, Ase Tieva, Pernilla Wikström, Ulf H Lerner, Anders Widmark
Clinical & experimental metastasis - 2009 -
Different affinity of galectins for human serum glycoproteins: Galectin-3 binds many protease inhibitors and acute phase
proteins
Cecilia Cederfur, Emma Salomonsson, Jonas Nilsson, Adnan Halim, Christopher T. Oeberg, Göran Larson, Ulf J. Nilsson, Hakon Leffler
Glycobiology - 2008 -
Interaction of Helicobacter pylori with sialylated carbohydrates: the dependence on different parts of the binding trisaccharide
Neu5Ac{alpha}3Gal{beta}4GlcNAc.
Petra Johansson, Jonas Nilsson, Jonas Ångström, Halina Miller-Podraza
Glycobiology - 2005 -
Nuclear translocation of antizyme and expression of ornithine decarboxylase and antizyme are developmentally
regulated
Amel Gritli Linde, Jonas Nilsson, Mohammad Bohlooly-Yeganeh, Olle Heby, Anders Linde
Developmental Dynamics - 2001