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- Daniele Silvestro
Daniele Silvestro
Forskare
Institutionen för biologi och miljövetenskap-
Two major ecological shifts shaped 60 million years of ungulate faunal
evolution
Fernando Blanco, Ignacio A. Lazagabaster, Oscar Sanisidro, Faysal Bibi, Nicola S. Heckeberg, Maria Rios, Bastien Mennecart, Maria Teresa Alberdi, Jose Luis Prado, Juha Saarinen, Daniele Silvestro, Johannes Mueller, Joaquin Calatayud, Juan L. Cantalapiedra
NATURE COMMUNICATIONS - 2025 -
The stepwise rise of angiosperm-dominated terrestrial
ecosystems
Wenna Ding, Daniele Silvestro, Renske E. Onstein, Mengxiao Wu, Zhekun Zhou, Yaowu Xing
BIOLOGICAL REVIEWS - 2025 -
Eco-Evolutionary Dynamics of Plant-Soil Feedbacks Explain the Spread Potential of a Plant Invader Under Climate Warming and Biocontrol
Herbivory
Yan Sun, Daniele Silvestro, Gregor H. Mathes, Marcel G. A. van Der Heijden, Heinz Muller-Scharer
GLOBAL CHANGE BIOLOGY - 2025 -
Toward a Semi-Supervised Learning Approach to Phylogenetic
Estimation
Daniele Silvestro, Thibault Latrille, Nicolas Salamin
SYSTEMATIC BIOLOGY - 2024 -
DeepDive: estimating global biodiversity patterns through time using deep
learning
Rebecca B. Cooper, Joseph T. Flannery-Sutherland, Daniele Silvestro
Nature Communications - 2024 -
Benchmarking imputation methods for categorical biological
data
Matthieu Gendre, Torsten Hauffe, Catalina Pimiento, Daniele Silvestro
METHODS IN ECOLOGY AND EVOLUTION - 2024 -
Plant diversity darkspots for global collection
priorities
Ian Ondo, Kiran L. Dhanjal-Adams, Samuel Pironon, Daniele Silvestro, Matheus Colli-Silva, Victor Deklerck, Olwen M. Grace, Alexandre K. Monro, Nicky Nicolson, Barnaby Walker, Alexandre Antonelli
NEW PHYTOLOGIST - 2024 -
Reliable biogeography requires fossils: insights from a new species-level phylogeny of extinct and living
carnivores
Sören Faurby, Daniele Silvestro, Lars Werdelin, Alexandre Antonelli
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES - 2024 -
Trait-mediated speciation and human-driven extinctions in proboscideans revealed by unsupervised Bayesian neural
networks
Torsten Hauffe, Juan L. Cantalapiedra, Daniele Silvestro
SCIENCE ADVANCES - 2024 -
Challenges in estimating species' age from phylogenetic
trees
Carlos Calderon del Cid, Torsten Hauffe, Juan D. Carrillo, Michael R. May, Rachel C. M. Warnock, Daniele Silvestro
GLOBAL ECOLOGY AND BIOGEOGRAPHY - 2024 -
The Clade Replacement Theory: a framework to study age-dependent
extinction
Carlos Calderon del Cid, Fabricio Villalobos, Ricardo Dobrovolski, Juan D. Carrillo, Daniele Silvestro, Bruno Vilela
JOURNAL OF EVOLUTIONARY BIOLOGY - 2024 -
Heterogeneous selectivity and morphological evolution of marine clades during the Permian-Triassic mass
extinction
Xiaokang Liu, Haijun Song, Daoliang Chu, Xu Dai, Fengyu Wang, Daniele Silvestro
NATURE ECOLOGY & EVOLUTION - 2024 -
Two Major Extinction Events in the Evolutionary History of Turtles: One Caused by an Asteroid, the Other by
Hominins
Anieli G. Pereira, Alexandre Antonelli, Daniele Silvestro, Sören Faurby
AMERICAN NATURALIST - 2024 -
The evolutionary history of the Central Asian steppe-desert taxon Nitraria (Nitrariaceae) as revealed by integration of fossil pollen morphology and molecular
data
A. Woutersen, P. E. Jardine, Daniele Silvestro, R. G. Bogota-Angel, H. X. Zhang, N. Meijer, J. Bouchal, N. Barbolini, G. Dupont-Nivet, A. Koutsodendris, Alexandre Antonelli, C. Hoorn
Botanical Journal of the Linnean Society - 2023 -
Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations
worldwide
Catalina Pimiento, Camille Albouy, Daniele Silvestro, Theophile L. Mouton, Laure Velez, David Mouillot, Aaron B. Judah, John N. Griffin, Fabien Leprieur
NATURE COMMUNICATIONS - 2023 -
Light, rather than circadian rhythm, regulates gas exchange in ferns and
lycophytes
D. Aros-Mualin, C. R. Guadagno, Daniele Silvestro, M. Kessler
Plant Physiology - 2023 -
Patterns and drivers of heat production in the plant genus
Amorphophallus
C. Claudel, O. Loiseau, Daniele Silvestro, S. Lev-Yadun, Alexandre Antonelli
Plant Journal - 2023 -
Slow and steady wins the race: Diversification rate is independent from body size and lifestyle in Malagasy skinks (Squamata: Scincidae:
Scincinae)
F. Belluardo, A. J. Munoz-Pajares, A. Miralles, Daniele Silvestro, W. Cocca, F. M. Ratsoavina, A. Villa, S. H. Roberts, M. Mezzasalma, A. Zizka, Alexandre Antonelli, A. Crottini
Molecular Phylogenetics and Evolution - 2023 -
GDGT distribution in tropical soils and its potential as a terrestrial paleothermometer revealed by Bayesian deep-learning
models
C. Häggi, B. D. A. Naafs, Daniele Silvestro, Jr. Bertassoli, T. K. Akabane, V. R. Mendes, A. O. Sawakuchi, C. M. Chiessi, C. A. Jaramillo, S. J. Feakins
Geochimica Et Cosmochimica Acta - 2023 -
A timescale for placental mammal diversification based on Bayesian modeling of the fossil
record
E. Carlisle, C. M. Janis, D. Pisani, P. C. J. Donoghue, Daniele Silvestro
Current Biology - 2023 -
Conceptual and empirical bridges between micro- and
macroevolution
J. Rolland, L. F. Henao-Diaz, M. Doebeli, R. Germain, L. J. Harmon, L. L. Knowles, L. H. Liow, J. E. Mank, A. Machac, S. P. Otto, M. Pennell, N. Salamin, Daniele Silvestro, M. Sugawara, J. Uyeda, C. E. Wagner, D. Schluter
Nature Ecology and Evolution - 2023 -
Dollo meets Bergmann: morphological evolution in secondary aquatic
mammals
B. M. Farina, Sören Faurby, Daniele Silvestro
Proceedings of the Royal Society B-Biological Sciences - 2023 -
Machine learning enhances prediction of plants as potential sources of
antimalarials
A. Richard-Bollans, C. Aitken, Alexandre Antonelli, C. Bitencourt, D. Goyder, E. Lucas, I. Ondo, O. A. Perez-Escobar, S. Pironon, J. E. Richardson, D. Russell, Daniele Silvestro, C. W. Wright, M. J. R. Howes
Frontiers in Plant Science - 2023 -
Stratigraphy of a middle Miocene neotropical Lagerstatte (La Venta Site,
Colombia)
L. Mora-Rojas, A. Cardenas, C. Jaramillo, Daniele Silvestro, G. Bayona, S. Zapata, F. Moreno, C. Silva, J. W. Moreno-Bernal, J. S. Jaramillo, V. Valencia, M. Ibanez
Geodiversitas - 2023 -
Dwarfism and gigantism drive human-mediated extinctions on
islands
R. Rozzi, M. V. Lomolino, A. A. E. van der Geer, Daniele Silvestro, S. K. Lyons, P. Bover, J. A. Alcover, A. Benitez-Lopez, C. H. Tsai, M. Fujita, M. O. Kubo, J. Ochoa, M. E. Scarborough, S. T. Turvey, A. Zizka, J. M. Chase
Science - 2023 -
A quantitative framework to infer the effect of traits, diversity and environment on dispersal and extinction rates from
fossils
T. Hauffe, M. M. Pires, T. B. Quental, T. Wilke, Daniele Silvestro
Methods in Ecology and Evolution - 2022 -
Madagascar’s extraordinary biodiversity: Evolution, distribution, and
use
Alexandre Antonelli, R. J. Smith, Allison L. Perrigo, A. Crottini, J. Hackel, Weston L. Testo, Harith Farooq, Maria Fernanda Torres Jimenez, N. Andela, Tobias Andermann, A. M. Andriamanohera, S. Andriambololonera, S. P. Bachman, Christine D. Bacon, W. J. Baker, F. Belluardo, C. Birkinshaw, J. S. Borrell, S. Cable, N. A. Canales, J. D. Carrillo, R. Clegg, C. Clubbe, Robert S. Cooke, Gabriel Damasco, S. Dhanda, Daniel Edler, Sören Faurby, Paola De Lima Ferreira, B. L. Fisher, F. Forest, L. M. Gardiner, S. M. Goodman, O. M. Grace, T. B. Guedes, M. C. Henniges, R. Hill, C. E. R. Lehmann, II Lowry, L. Marline, P. Matos-Maraví, J. Moat, B. Neves, M. G. C. Nogueira, R. E. Onstein, A. S. T. Papadopulos, O. A. Perez-Escobar, L. N. Phelps, P. B. Phillipson, S. Pironon, N. A. S. Przelomska, M. Rabarimanarivo, D. Rabehevitra, J. Raharimampionona, M. T. Rajaonah, F. Rajaonary, L. R. Rajaovelona, M. Rakotoarinivo, A. A. Rakotoarisoa, S. E. Rakotoarisoa, H. N. Rakotomalala, F. Rakotonasolo, B. A. Ralaiveloarisoa, M. Ramirez-Herranz, J. E. N. Randriamamonjy, T. Randriamboavonjy, V. Randrianasolo, A. Rasolohery, A. N. Ratsifandrihamanana, N. Ravololomanana, V. Razafiniary, H. Razanajatovo, E. Razanatsoa, M. Rivers, F. Sayol, Daniele Silvestro, M. S. Vorontsova, K. Walker, B. E. Walker, P. Wilkin, J. Williams, T. Ziegler, A. Zizka, H. Ralimanana
Science - 2022 -
Madagascar’s extraordinary biodiversity: Threats and
opportunities
H. Ralimanana, Allison L. Perrigo, R. J. Smith, J. S. Borrell, Sören Faurby, M. T. Rajaonah, T. Randriamboavonjy, M. S. Vorontsova, Robert S. Cooke, L. N. Phelps, F. Sayol, N. Andela, Tobias Andermann, A. M. Andriamanohera, S. Andriambololonera, S. P. Bachman, Christine D. Bacon, W. J. Baker, F. Belluardo, C. Birkinshaw, S. Cable, N. A. Canales, J. D. Carrillo, R. Clegg, C. Clubbe, A. Crottini, Gabriel Damasco, S. Dhanda, Daniel Edler, Harith Farooq, Paola De Lima Ferreira, B. L. Fisher, F. Forest, L. M. Gardiner, S. M. Goodman, O. M. Grace, T. B. Guedes, J. Hackel, M. C. Henniges, R. Hill, C. E. R. Lehmann, II Lowry, L. Marline, P. Matos-Maraví, J. Moat, B. Neves, M. G. C. Nogueira, R. E. Onstein, A. S. T. Papadopulos, O. A. Perez-Escobar, P. B. Phillipson, S. Pironon, N. A. S. Przelomska, M. Rabarimanarivo, D. Rabehevitra, J. Raharimampionona, F. Rajaonary, L. R. Rajaovelona, M. Rakotoarinivo, A. A. Rakotoarisoa, S. E. Rakotoarisoa, H. N. Rakotomalala, F. Rakotonasolo, B. A. Ralaiveloarisoa, M. Ramirez-Herranz, J. E. N. Randriamamonjy, V. Randrianasolo, A. Rasolohery, A. N. Ratsifandrihamanana, N. Ravololomanana, V. Razafiniary, H. Razanajatovo, E. Razanatsoa, M. Rivers, Daniele Silvestro, Weston L. Testo, Maria Fernanda Torres Jimenez, K. Walker, B. E. Walker, P. Wilkin, J. Williams, T. Ziegler, A. Zizka, Alexandre Antonelli
Science - 2022 -
The origin and evolution of open habitats in North America inferred by Bayesian deep learning
models
Tobias Andermann, C. A. E. Strömberg, Alexandre Antonelli, Daniele Silvestro
Nature Communications - 2022 -
Climate warming can reduce biocontrol efficacy and promote plant invasion due to both genetic and transient metabolomic
changes
Yan Sun, Tobias Züst, Daniele Silvestro, Matthias Erb, Oliver Bossdorf, Pierre Mateo, Christelle Robert, Heinz Müller-Schärer
Ecology Letters - 2022 -
Regional landscape change triggered by Andean uplift: The extinction of Sparassodonta (Mammalia, Metatheria) in South
America
K. Pino, P. Vallejos-Garrido, N. Espinoza-Aravena, R. B. Cooper, Daniele Silvestro, C. E. Hernández, E. Rodríguez-Serrano
Global and Planetary Change - 2022 -
Drivers of diversification in freshwater gastropods vary over deep
time
Thomas A. Neubauer, Torsten Hauffe, Daniele Silvestro, Christopher R. Scotese, Björn Stelbrink, Christian Albrecht, Diana Delicado, Mathias Harzhauser, Thomas Wilke
Proceedings of the Royal Society B: Biological Sciences - 2022 -
Diversification dynamics of cheilostome bryozoans based on a Bayesian analysis of the fossil
record
Farideh Moharrek, Paul D. Taylor, Daniele Silvestro, Helen L. Jenkins, Dennis P. Gordon, Andrea Waeschenbach
Palaeontology - 2022 -
The origin of modern patterns of continental diversity in Mauritiinae palms: the Neotropical museum and the Afrotropical
graveyard
Christine D. Bacon, Daniele Silvestro, C. Hoorn, G. Bogota-Angel, Alexandre Antonelli, Nicolas Chazot
Biology Letters - 2022 -
Integrating machine learning, remote sensing and citizen science to create an early warning system for
biodiversity
Alexandre Antonelli, K. L. Dhanjal-Adams, Daniele Silvestro
Plants People Planet - 2022 -
Global diversity dynamics in the fossil record are regionally
heterogeneous
J. T. Flannery-Sutherland, Daniele Silvestro, M. J. Benton
Nature Communications - 2022 -
Spatio-temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat
transitions
Maria Fernanda Calió, V. A. Thode, Christine D. Bacon, Daniele Silvestro, Alexandre Antonelli, L. G. Lohmann
Journal of Biogeography - 2022 -
Improving biodiversity protection through artificial
intelligence
Daniele Silvestro, Stefano Goria, Thomas Sterner, Alexandre Antonelli
Nature Sustainibility - 2022 -
Short-term paleogeographic reorganizations and climate events shaped diversification of North American freshwater gastropods over deep
time
T. A. Neubauer, M. Harzhauser, J. H. Hartman, Daniele Silvestro, C. R. Scotese, A. Czaja, G. J. Vermeij, T. Wilke
Scientific Reports - 2022 -
Global Estimation and Mapping of the Conservation Status of Tree Species Using Artificial
Intelligence
S. V. Silva, Tobias Andermann, A. Zizka, G. Kozlowski, Daniele Silvestro
Frontiers in Plant Science - 2022 -
Estimating Alpha, Beta, and Gamma Diversity Through Deep
Learning
Tobias Andermann, Alexandre Antonelli, R. L. Barrett, Daniele Silvestro
Frontiers in Plant Science - 2022 -
Extinction at the end-Cretaceous and the origin of modern Neotropical
rainforests
M. R. Carvalho, C. Jaramillo, F. de la Parra, D. Caballero-Rodriguez, F. Herrera, S. Wing, B. L. Turner, C. D'Apolito, M. Romero-Baez, P. Narvaez, C. Martinez, M. Gutierrez, C. Labandeira, G. Bayona, M. Rueda, M. Paez-Reyes, D. Cardenas, A. Duque, J. L. Crowley, C. Santos, Daniele Silvestro
Science - 2021 -
Long-term topographic growth and decay constrained by 3D thermo-kinematic modeling: Tectonic evolution of the Antioquia Altiplano, Northern
Andes
S. Zapata, M. Zapata-Henao, A. Cardona, C. Jaramillo, Daniele Silvestro, F. Oboh-Ikuenobe
Global and Planetary Change - 2021 -
raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using
RAxML
D. Edler, J. Klein, Alexandre Antonelli, Daniele Silvestro
Methods in Ecology and Evolution - 2021 -
sampbias, a method for quantifying geographic sampling biases in species distribution
data
A. Zizka, Alexandre Antonelli, Daniele Silvestro
Ecography - 2021 -
Bio-Dem, a tool to explore the relationship between biodiversity data availability and socio-political conditions in time and
space
A. Zizka, Oskar Rydén, Daniel Edler, Johannes Klein, Allison L. Perrigo, Daniele Silvestro, Sverker C. Jagers, Staffan I. Lindberg, Alexandre Antonelli
Journal of Biogeography - 2021 -
Current extinction rate in European freshwater gastropods greatly exceeds that of the late Cretaceous mass
extinction
T. A. Neubauer, T. Hauffe, Daniele Silvestro, J. Schauer, D. Kadolsky, F. P. Wesselingh, M. Harzhauser, T. Wilke
Communications Earth & Environment - 2021 -
Fossil data support a pre-Cretaceous origin of flowering
plants
Daniele Silvestro, Christine D. Bacon, W. N. Ding, Q. Y. Zhang, P. C. J. Donoghue, Alexandre Antonelli, Y. W. Xing
Nature Ecology & Evolution - 2021 -
iucn_sim: a new program to simulate future extinctions based on IUCN threat
status
Tobias Andermann, Sören Faurby, Robert S. Cooke, Daniele Silvestro, Alexandre Antonelli
Ecography - 2021 -
Automated conservation assessment of the orchid family with deep
learning
A. Zizka, Daniele Silvestro, P. Vitt, T. M. Knight
Conservation Biology - 2021
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