Daniele Silvestro
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Bio-Dem, a tool to explore the relationship between biodiversity data availability and socio-political conditions in time and
space
A. Zizka, Oskar Rydén, Daniel Edler, Johannes Klein, Allison L. Perrigo, Daniele Silvestro, Sverker C. Jagers, Staffan I. Lindberg, Alexandre Antonelli
Journal of Biogeography - 2021-01-01 -
Long-term topographic growth and decay constrained by 3D thermo-kinematic modeling: Tectonic evolution of the Antioquia Altiplano, Northern
Andes
S. Zapata, M. Zapata-Henao, A. Cardona, C. Jaramillo, Daniele Silvestro, F. Oboh-Ikuenobe
Global and Planetary Change - 2021-01-01 -
Extinction at the end-Cretaceous and the origin of modern Neotropical
rainforests
M. R. Carvalho, C. Jaramillo, F. de la Parra, D. Caballero-Rodriguez, F. Herrera, S. Wing, B. L. Turner, C. D'Apolito, M. Romero-Baez, P. Narvaez, C. Martinez, M. Gutierrez, C. Labandeira, G. Bayona, M. Rueda, M. Paez-Reyes, D. Cardenas, A. Duque, J. L. Crowley, C. Santos, Daniele Silvestro
Science - 2021-01-01 -
Current extinction rate in European freshwater gastropods greatly exceeds that of the late Cretaceous mass
extinction
T. A. Neubauer, T. Hauffe, Daniele Silvestro, J. Schauer, D. Kadolsky, F. P. Wesselingh, M. Harzhauser, T. Wilke
Communications Earth & Environment - 2021-01-01 -
Fossil data support a pre-Cretaceous origin of flowering
plants
Daniele Silvestro, Christine D. Bacon, W. N. Ding, Q. Y. Zhang, P. C. J. Donoghue, Alexandre Antonelli, Y. W. Xing
Nature Ecology & Evolution - 2021-01-01 -
sampbias, a method for quantifying geographic sampling biases in species distribution
data
A. Zizka, Alexandre Antonelli, Daniele Silvestro
Ecography - 2021-01-01 -
raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using
RAxML
D. Edler, J. Klein, Alexandre Antonelli, Daniele Silvestro
Methods in Ecology and Evolution - 2021-01-01 -
Automated conservation assessment of the orchid family with deep
learning
A. Zizka, Daniele Silvestro, P. Vitt, T. M. Knight
Conservation Biology - 2020-01-01 -
iucn_sim: a new program to simulate future extinctions based on IUCN threat
status
Tobias Andermann, Sören Faurby, Robert S. Cooke, Daniele Silvestro, Alexandre Antonelli
Ecography - 2020-01-01 -
The rise of angiosperms pushed conifers to decline during global
cooling
F. L. Condamine, Daniele Silvestro, E. B. Koppelhus, Alexandre Antonelli
Proceedings of the National Academy of Sciences of the United States of America - 2020-01-01 -
A multi-platform package for the analysis of intra- and interspecific trait
evolution
T. Gaboriau, F. K. Mendes, S. Joly, Daniele Silvestro, N. Salamin
Methods in Ecology and Evolution - 2020-01-01 -
Deep drilling reveals massive shifts in evolutionary dynamics after formation of ancient
ecosystem
T. Wilke, T. Hauffe, E. Jovanovska, A. Cvetkoska, T. Donders, K. Ekschmitt, A. Francke, J. H. Lacey, Z. Levkov, C. R. Marshall, T. A. Neubauer, Daniele Silvestro, B. Stelbrink, H. Vogel, C. Albrecht, J. Holtvoeth, S. Krastel, N. Leicher, M. J. Leng, K. Lindhorst, A. Masi, N. Ognjanova-Rumenova, K. Panagiotopoulos, J. M. Reed, L. Sadori, S. Tofilovska, B. Van Bocxlaer, F. Wagner-Cremer, F. P. Wesselingh, V. Wolters, G. Zanchetta, X. S. Zhang, B. Wagner
Science Advances - 2020-01-01 -
Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic
Interchange
Juan D. Carrillo, Sören Faurby, Daniele Silvestro, A. Zizka, Carlos Jaramillo, Christine D. Bacon, Alexandre Antonelli
Proceedings of the National Academy of Sciences of the United States of America - 2020-01-01 -
The past and future human impact on mammalian
diversity
Tobias Andermann, Sören Faurby, S. T. Turvey, Alexandre Antonelli, Daniele Silvestro
Science Advances - 2020-01-01 -
Selective extinction against redundant species buffers functional
diversity
C. Pimiento, Christine D. Bacon, Daniele Silvestro, A. Hendy, C. Jaramillo, A. Zizka, X. Meyer, Alexandre Antonelli
Proceedings of the Royal Society B-Biological Sciences - 2020-01-01 -
Slowly but surely: gradual diversification and phenotypic evolution in the hyper-diverse tree fern family
Cyatheaceae
O. Loiseau, A. Weigand, S. Noben, J. Rolland, Daniele Silvestro, M. Kessler, M. Lehnert, N. Salamin
Annals of Botany - 2020-01-01 -
A 450 million years long latitudinal gradient in age-dependent
extinction
Daniele Silvestro, S. Castiglione, A. Mondanaro, C. Serio, M. Melchionna, P. Piras, M. Di Febbraro, F. Carotenuto, L. Rook, P. Raia
Ecology Letters - 2020-01-01 -
A quantitative workflow for modeling diversification in material
culture
E. Gjesfjeld, Daniele Silvestro, J. Chang, B. Koch, J. G. Foster, M. E. Alfaro
PLoS ONE - 2020-01-01 -
Functional diversity of marine megafauna in the
Anthropocene
C. Pimiento, F. Leprieur, Daniele Silvestro, J. S. Lefcheck, C. Albouy, D. B. Rasher, M. Davis, J. C. Svenning, J. N. Griffin
Science Advances - 2020-01-01 -
Brain expansion in early hominins predicts carnivore extinctions in East
Africa
Sören Faurby, Daniele Silvestro, L. Werdelin, Alexandre Antonelli
Ecology Letters - 2020-01-01 -
Improved estimation of macroevolutionary rates from fossil data using a Bayesian
framework
Daniele Silvestro, N. Salamin, Alexandre Antonelli, X. Meyer
Paleobiology - 2019-01-01 -
The early wasp plucks the flower: disparate extant diversity of sawfly superfamilies (Hymenoptera: "Symphyta') may reflect asynchronous switching to angiosperm
hosts
T. Nyman, R. E. Onstein, Daniele Silvestro, S. Wutke, A. Taeger, N. Wahlberg, S. M. Blank, T. Malm
Biological Journal of the Linnean Society - 2019-01-01 -
Detecting the macroevolutionary signal of species
interactions
L. J. Harmon, C. S. Andreazzi, F. Débarre, J. Drury, E. E. Goldberg, A. B. Martins, C. J. Melián, A. Narwani, S. L. Nuismer, M. W. Pennell, S. M. Rudman, O. Seehausen, Daniele Silvestro, M. Weber, B. Matthews
Journal of Evolutionary Biology - 2019-01-01 -
CoordinateCleaner: Standardized cleaning of occurrence records from biological collection
databases
Alexander Zizka, Daniele Silvestro, Tobias Andermann, Josué Azevedo, Camila Ritter, Daniel Edler, Harith Farooq, Andrei Herdean, María Ariza, Ruud Scharn, Sten Svantesson, Niklas Wengström, V. Zizka, Alexandre Antonelli
Methods in Ecology and Evolution - 2019-01-01 -
Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African
Ancestors
Daniele Silvestro, Marcelo Tejedor, M. L. Serrano-Serrano, O. Loiseau, V. Rossier, J. Rolland, Alexander Zizka, S. Höhna, Alexandre Antonelli, N. Salamin
Systematic biology - 2019-01-01 -
Closing the gap between palaeontological and neontological speciation and extinction rate
estimates
Daniele Silvestro, R. C. M. Warnock, A. Gavryushkina, T. Stadler
Nature Communications - 2018-01-01 -
Conceptual and empirical advances in Neotropical biodiversity
research
Alexandre Antonelli, María Ariza, J. Albert, Tobias Andermann, Josué Azevedo, Christine D. Bacon, Sören Faurby, Thaís Guedes, C. Hoorn, L. G. Lohmann, Pável Matos-Maraví, Camila Ritter, I. Sanmartín, Daniele Silvestro, Marcelo Tejedor, H. Ter Steege, H. Tuomisto, F. P. Werneck, Alexander Zizka, S. V. Edwards
PeerJ - 2018-01-01 -
Diversification dynamics of mammalian clades during the K - Pg mass
extinction
M. M. Pires, B. D. Rankin, Daniele Silvestro, T. B. Quental
Biology Letters - 2018-01-01 -
Phylotar: An automated pipeline for retrieving orthologous DNA sequences from GenBank in
R
Dominic J. Bennett, H. Hettling, Daniele Silvestro, Alexander Zizka, Christine D. Bacon, Sören Faurby, R. A. Vos, Alexandre Antonelli
Life - 2018-01-01 -
Inferring Macroevolutionary Dynamics in Mountain Systems from
Fossils
Daniele Silvestro, Jan Schnitzler
Mountains, Climate and Biodiversity (Eds. Hoorn, Perrigo, and Antonelli) - 2018-01-01 -
Building up biogeography: Pattern to
process
W. D. Pearse, A. M. Barbosa, S. A. Fritz, S. A. Keith, L. J. Harmon, J. Harte, Daniele Silvestro, X. Xiao, T. J. Davies
Journal of Biogeography - 2018-01-01 -
Amazonia is the primary source of Neotropical
biodiversity
Alexandre Antonelli, Alexander Zizka, Fernanda Antunes Carvalho, Ruud Scharn, Christine D. Bacon, Daniele Silvestro, Fabien L. Condamine
Proceedings of the National Academy of Sciences of the United States of America - 2018-01-01 -
Evolution of the sabertooth mandible: A deadly ecomorphological
specialization
P. Piras, Daniele Silvestro, F. Carotenuto, S. Castiglione, A. Kotsakis, L. Maiorino, M. Melchionna, A. Mondanaro, G. Sansalone, C. Serio, V. A. Vero, P. Raia
Palaeogeography Palaeoclimatology Palaeoecology - 2018-01-01 -
Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and
Phylogenies
Oskar Hagen, Tobias Andermann, Tiago B Quental, Alexandre Antonelli, Daniele Silvestro
Systematic Biology - 2018-01-01 -
The impact of endothermy on the climatic niche evolution and the distribution of vertebrate
diversity
J. Rolland, Daniele Silvestro, D. Schluter, A. Guisan, O. Broennimann, N. Salamin
Nature Ecology & Evolution - 2018-01-01 -
Clownfishes evolution below and above the species
level
J. Rolland, Daniele Silvestro, G. Litsios, L. Faye, N. Salamin
Proceedings of the Royal Society of London. Biological Sciences - 2018-01-01 -
Provenance analysis of the Pliocene Ware Formation in the Guajira Peninsula, northern Colombia: Paleodrainage
implications
N. Pérez-Consuegra, M. Parra, C. Jaramillo, Daniele Silvestro, S. Echeverri, C. Montes, J. M. Jaramillo, J. Escobar
Journal of South American Earth Sciences - 2018-01-01 -
Comment (1) on "Formation of the Isthmus of Panama" by O'Dea et
al.
Carlos Jaramillo, Camilo Montes, Agustín Cardona, Daniele Silvestro, Alexandre Antonelli, Christine D. Bacon
Science advances - 2017-01-01 -
SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and
Evolution.
Mats H. Töpel, Alexander Zizka, Maria Fernanda Calió, Ruud Scharn, Daniele Silvestro, Alexandre Antonelli
Systematic Biology - 2017-01-01 -
Environmentally driven extinction and opportunistic origination explain fern diversification
patterns
S. Lehtonen, Daniele Silvestro, D. N. Karger, C. Scotese, H. Tuomisto, M. Kessler, C. Pena, N. Wahlberg, Alexandre Antonelli
Scientific Reports - 2017-01-01 -
The Pliocene marine megafauna extinction and its impact on functional
diversity
C. Pimiento, J. N. Griffin, C. F. Clements, Daniele Silvestro, S. Varela, M. D. Uhen, C. Jaramillo
Nature Ecology & Evolution - 2017-01-01 -
Bayesian estimation of multiple clade competition from fossil
data
Daniele Silvestro, M M Pires, T B Quental, N Salamin
Evolutionary Ecology Research - 2017-01-01 -
Interactions within and between clades shaped the diversification of terrestrial
carnivores
M. M. Pires, Daniele Silvestro, T. B. Quental
Evolution - 2017-01-01 -
Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity
hotspot
O. A. Perez-Escobar, G. Chomicki, F. L. Condamine, A. P. Karremans, D. Bogarin, N. J. Matzke, Daniele Silvestro, Alexandre Antonelli
New Phytologist - 2017-01-01 -
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of
Taxa.
Alexandre Antonelli, Hannes Hettling, Fabien L. Condamine, Karin Vos, R. Henrik Nilsson, Michael J Sanderson, Hervé Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Christine D. Bacon, Bengt Oxelman, Rutger A Vos
Systematic biology - 2017-01-01 -
Mammal body size evolution in North America and Europe over 20 Myr: similar trends generated by different
processes
S. Huang, J. T. Eronen, C. M. Janis, J. J. Saarinen, Daniele Silvestro, S. A. Fritz
Proceedings of the Royal Society B - Biological Sciences - 2017-01-01 -
Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr.
(Bromeliaceae)
G. A. S. Cruz, G. Zizka, Daniele Silvestro, E. M. C. Leme, K. Schulte, A. M. Benko-Iseppon
Molecular Phylogenetics and Evolution - 2017-01-01 -
Competition and extinction explain the evolution of diversity in American
automobiles
E Gjesfjeld, J Chang, Daniele Silvestro, C Kelty, M E Alfaro
Palgrave Communications - 2016-01-01 -
Fossil biogeography: A new model to infer dispersal, extinction and sampling from palaeontological
data
Daniele Silvestro, Alexander Zizka, Christine D. Bacon, Borja Cascales-Miñana, Nicolas Salamin, Alexandre Antonelli
Philosophical Transactions of the Royal Society B: Biological Sciences - 2016-01-01 -
Progress to extinction: increased specialisation causes the demise of animal
clades
P. Raia, F. Carotenuto, A. Mondanaro, S. Castiglione, F. Passaro, F. Saggese, M. Melchionna, C. Serio, L. Alessio, Daniele Silvestro, M. Fortelius
Scientific Reports - 2016-01-01 -
Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian
Approach
A. Kostikova, Daniele Silvestro, P. B. Pearman, N. Salamin
Systematic Biology - 2016-01-01 -
Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and
biases
Christine D. Bacon, Daniele Silvestro, C. Jaramillo, B.T. Smith, P. Chakrabarty, Alexandre Antonelli
Proceedings of the National Academy of Sciences of the United States of America - 2015-01-01 -
Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical
Gesneriaceae
M. L. Serrano-Serrano, M. Perret, M. Guignard, A. Chautems, Daniele Silvestro, N. Salamin
Bmc Evolutionary Biology - 2015-01-01 -
An engine for global plant diversity: Highest evolutionary turnover and emigration in the American
tropics
Alexandre Antonelli, Alexander Zizka, Daniele Silvestro, Ruud Scharn, B. Cascales-Miñana, Christine D. Bacon
Frontiers in Genetics - 2015-01-01 -
Continental faunal exchange and the asymmetrical radiation of
carnivores
M. M. Pires, Daniele Silvestro, T. B. Quental
Proceedings of the Royal Society B-Biological Sciences - 2015-01-01 -
The role of clade competition in the diversification of North American
canids
Daniele Silvestro, Alexandre Antonelli, N. Salamin, T. B. Quental
Proceedings of the National Academy of Sciences of the United States of America - 2015-01-01 -
Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil
record
Daniele Silvestro, B. Cascales-Minana, Christine D. Bacon, Alexandre Antonelli
New Phytologist - 2015-01-01 -
Biological evidence supports an early and complex emergence of the Isthmus of
Panama
Christine D. Bacon, Daniele Silvestro, C. Jaramillo, B. T. Smith, P. Chakrabarty, Alexandre Antonelli
Proceedings of the National Academy of Sciences of the United States of America - 2015-01-01 -
Measurement errors should always be incorporated in phylogenetic comparative
analysis
Daniele Silvestro, A. Kostikova, G. Litsios, P. B. Pearman, N. Salamin
Methods in Ecology and Evolution - 2015-01-01 -
SUPERSMART: ecology and evolution in the era of big
data
Alexandre Antonelli, Fabien L. Condamine, Johannes Hettling, Karin Nilsson, R. Henrik Nilsson, Bengt Oxelman, Michael J Sanderson, Herve Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Rutger A Vos
PeerJ PrePrints - 2014-01-01 -
SpeciesGeoCoder: Fast categorisation of species occurrences for analyses of biodiversity, biogeography, ecology and
evolution.
Mats H. Töpel, Maria Fernanda Calió, Alexander Zizka, Ruud Scharn, Daniele Silvestro, Alexandre Antonelli
bioRxiv - 2014-01-01 -
PyRate: a new program to estimate speciation and extinction rates from incomplete fossil
data
Daniele Silvestro, N. Salamin, J. Schnitzler
Methods in Ecology and Evolution - 2014-01-01 -
Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence
Data
Daniele Silvestro, J Schnitzler, L.H Liow, Alexandre Antonelli, N Salamin
Systematic Biology - 2014-01-01 -
The red island and the seven dwarfs: body size reduction in
Cheirogaleidae
J. C. Masters, F. Genin, Daniele Silvestro, A. M. Lister, M. DelPero, Science V. P. Rtmill M
Journal of Biogeography - 2014-01-01 -
Evolutionary footprint of coevolving positions in
genes
L. Dib, Daniele Silvestro, N. Salamin
Bioinformatics - 2014-01-01