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- Erik Kristiansson
Erik Kristiansson
Professor
Institutionen för biologi och miljövetenskapOm Erik Kristiansson
My research focuses on analysis of quantitative data with applications in molecular biology and medicine.
More information about me and my research group is available at http://bioinformatics.math.chalmers.se/erikkristiansson/erikkristiansson.html
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Coastal subtropical Southern American shallow lakes as unique ecosystems for monitoring anthropogenic induced ecosystem
changes
Mariana Kluge, Agatha C. Shubeita, Anna Uchaikina, Cecilia Alonso, Bruna S. Herrman, Caroline Menegotto-Silva, Caroline Z. Lopes, Danielle M. Pagani, David M. Marques, Eduardo Moreira-Silva, Erik Kristiansson, Isadora Quintana, Jose Cavalcanti, Juliane D. Fleck, Karine F. Ribeiro, Laleh Varghaei, Lucas T. Oliveira, Lucia H. R. Rodrigues, Luciana G. Ramilo, Luciane O. Crossetti, Maria Stockenreiter, Marie M. Cabezudo, Marla S. Lima, Natali K. P. Goncalves, Nestor Mazzeo, Rafael O Schneider, Laura R. P. Utz, Stefan Bertilsson, Christian Wurzbacher, Ng Haig They, Renata Medina-Silva
ONE ECOSYSTEM - 2026 -
Antibiotic resistance gene analyses in microbial communities: challenges and
opportunities
Joakim Larsson, Carl-Fredrik Flach, Erik Kristiansson
Nature Communications - 2026 -
Antibiotic resistance gradient along a large Scandinavian river influenced by wastewater treatment
plants
Daniela Gómez Martínez, Judith Sorel Ngou, Valentina Ugolini, Foon Yin Lai, Henrik Nilsson, Erik Kristiansson, Natàlia Corcoll Cornet
FEMS MICROBIOLOGY ECOLOGY - 2026 -
Confidence-based prediction of antibiotic resistance at the patient
level
Juan Salvador Inda Díaz, Anna Johnning, Magnus Hessel, Anders Sjoberg, Anna Lokrantz, Lisa Helldal, Mats Jirstrand, Lennart Svensson, Erik Kristiansson
MBIO - 2026 -
Development and validation of a new method for predicting spatial and temporal concentration dynamics of active pharmaceutical ingredients in a lake receiving wastewater
effluents.
Mikael Gustavsson, Ekaterina Sokolova, Sverker Molander, Prajwol Prajapati, Johan Kjellin, Anna Karlsson, Karin Wiberg, Erik Kristiansson
Water research - 2025 -
Evaluating wastewater surveillance for estimating pharmaceutical
use.
Gilbert Osena, Jerker Fick, Carl-Fredrik Flach, Erik Kristiansson, Joakim Larsson
Environment international - 2025 -
Strain-Level Typing of Streptococcus pyogenes Using Optical DNA
Mapping
Radhika N. Kunnath, Zahra Abbaspour, Anna Johnning, Karolin Frykholm, Marie Wrande, Albertas Dvirnas, Sriram Kk, Christian G. Giske, Tobias Ambjornsson, Linus Sandegren, Erik Kristiansson, Fredrik Westerlund
ACS INFECTIOUS DISEASES - 2025 -
Unraveling the origins of mobile antibiotic resistance genes using random forest classification of large-scale genomic
data
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Environment International - 2025 -
The transfer of antibiotic resistance genes between evolutionarily distant
bacteria
Marcos Parras-Moltó, David Lund, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson
MSPHERE - 2025 -
Genetic compatibility and ecological connectivity drive the dissemination of antibiotic resistance
genes
David Lund, Marcos Parras-Moltó, Juan Salvador Inda Díaz, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson
NATURE COMMUNICATIONS - 2025 -
Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic
organisms
Mikael Gustavsson, Styrbjörn Käll, Patrik Svedberg, Juan Salvador Inda Díaz, Sverker Molander, Jessica Coria, Thomas Backhaus, Erik Kristiansson
Sciences Advances - 2024 -
20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic
mycology
R. Henrik Nilsson, Arnold Tobias Jansson, Christian Wurzbacher, Sten Anslan, Pauline H. Belford, Natàlia Corcoll, Alexandra Dombrowski, Masoomeh Ghobad-Nejhad, Mikael Gustavsson, Daniela Gómez-Martínez, Faheema Kalsoom Khan, Maryia Khomich, Charlotte Lennartsdotter, David Lund, Breyten Van Der Merwe, Vladimir Mikryukov, Marko Peterson, Teresita M. Porter, Sergei Põlme, Alice Retter, Marisol Sanchez-Garcia, Sten Svantesson, Patrik Svedberg, Duong Vu, Martin Ryberg, Kessy Abarenkov, Erik Kristiansson
MycoKeys - 2024 -
Environmental concentrations of the fungicide tebuconazole alter microbial biodiversity and trigger biofilm-released transformation
products
Daniela Gómez-Martínez, Mary A. Selvin, Anders K. Nilsson, Eric Carmona, Judith Sorel Ngou, Erik Kristiansson, R. Henrik Nilsson, Natàlia Corcoll
Chemosphere - 2024 -
Dataset on aquatic ecotoxicity predictions of 2697 chemicals, using three quantitative structure-activity relationship
platforms
Patrik Svedberg, Pedro Inostroza, Mikael Gustavsson, Erik Kristiansson, Francis Spilsbury, Thomas Backhaus
Data in Brief - 2023 -
Risk assessment of chemicals and their mixtures are hindered by scarcity and inconsistencies between different environmental exposure
limits
Mikael Gustavsson, S. Molander, Thomas Backhaus, Erik Kristiansson
Environmental Research - 2023 -
How, not if, is the question mycologists should be asking about DNA-based
typification.
R. Henrik Nilsson, Martin Ryberg, Christian Wurzbacher, Leho Tedersoo, Sten Anslan, Sergei Põlme, Viacheslav Spirin, Vladimir Mikryukov, Sten Svantesson, Martin Hartmann, Charlotte Lennartsdotter, Pauline Belford, Maryia Khomich, Alice Retter, Natàlia Corcoll, Daniela Gómez Martinez, Arnold Tobias Jansson, Masoomeh Ghobad-Nejhad, Duong Vu, Marisol Sanchez-Garcia, Erik Kristiansson, Kessy Abarenkov
MycoKeys - 2023 -
Evidence for wastewaters as environments where mobile antibiotic resistance genes
emerge
Fanny Berglund, Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2023 -
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental
microbiomes
Juan Salvador Inda Díaz, David Lund, Marcos Parras-Moltó, Anna Johnning, Johan Bengtsson-Palme, Erik Kristiansson
Microbiome - 2023 -
Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human
pathogens
David Lund, Roelof Dirk Coertze, Marcos Parras-Moltó, Fanny Berglund, Carl-Fredrik Flach, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Communications Biology - 2023 -
Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide
diflufenican
Daniela Gómez-Martínez, Johanna Bengtson, Anders K. Nilsson, Adrian K Clarke, R. Henrik Nilsson, Erik Kristiansson, Natàlia Corcoll
Science of the Total Environment - 2023 -
Strain-level bacterial typing directly from patient samples using optical DNA
mapping
M. Nyblom, Anna Johnning, K. Frykholm, M. Wrande, V. Mnller, G. Goyal, M. Robertsson, A. Dvirnas, T. Sewunet, K. K. Sriram, T. Ambjornsson, C. G. Giske, L. Sandegren, Erik Kristiansson, F. Westerlund
Communications Medicine - 2023 -
Economic interests cloud hazard reductions in the European regulation of substances of very high
concern
Jessica Coria, Erik Kristiansson, Mikael Gustavsson
Nature Communications - 2022 -
Estimating the release of chemical substances from consumer products, textiles and pharmaceuticals to
wastewater
Mikael Gustavsson, S. Molander, Thomas Backhaus, Erik Kristiansson
Chemosphere - 2022 -
The curse of the uncultured
fungus
Kessy Abarenkov, Erik Kristiansson, Martin Ryberg, Sandra Nogal-Prata, Daniela Gómez-Martínez, Katrin Stüer-Patowsky, Tobias Jansson, Sergei Palme, Masoomeh Ghobad-Nejhad, Natàlia Corcoll, Ruud Scharn, Marisol Sánchez-García, Maryia Khomich, Christian Wurzbacher, R. Henrik Nilsson
MycoKeys - 2022 -
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated
genes
David Lund, Nicolas Kieffer, Marcos Parras-Moltó, Stefan Ebmeyer, Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2022 -
The impact of the ST131 clone on recurrent ESBL-producing E. coli urinary tract infection: a prospective comparative
study
Anna Lindblom, C. Kiszakiewicz, Erik Kristiansson, Shora Yazdanshenas, N. Kamenska, Nahid Karami, Christina Åhrén
Scientific Reports - 2022 -
GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and
plasmids
Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson
Bioinformatics - 2022 -
Does the scientific knowledge reflect the chemical diversity of environmental pollution? – A twenty-year
perspective
Erik Kristiansson, Jessica Coria, Lina Gunnarsson, Mikael Gustavsson
Environmental Science and Policy - 2021 -
An updated phylogeny of the
metallo-β-lactamases.
Fanny Berglund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
The Journal of antimicrobial chemotherapy - 2021 -
Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model
approach
A. Dvirnas, C. Stewart, V. Muller, S. K. Bikkarolla, K. Frykholm, L. Sandegren, Erik Kristiansson, F. Westerlund, T. Ambjornsson
PLoS ONE - 2021 -
SMAD4 haploinsufficiency in small intestinal neuroendocrine
tumors
Tobias Hofving, Erik Elias, Anna Rehammar, Linda Inge, Gülay Altiparmak, Marta Persson, Erik Kristiansson, Martin E Johansson, Ola Nilsson, Yvonne Arvidsson
BMC Cancer - 2021 -
A framework for identifying the recent origins of mobile antibiotic resistance
genes
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2021 -
Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar
concentrations
Martin Eriksson, Kemal Sanli, R. Henrik Nilsson, Alexander Eiler, Natàlia Corcoll, Carl-Henrik Johansson, Thomas Backhaus, Hans Blanck, Erik Kristiansson
Ecotoxicology - 2020 -
Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial
resistome.
Carolin Rutgersson, Stefan Ebmeyer, Simon Bo Lassen, Antti Karkman, Jerker Fick, Erik Kristiansson, Kristian K Brandt, Carl-Fredrik Flach, D. G. Joakim Larsson
Environment international - 2020 -
A comprehensive survey of integron-associated genes present in
metagenomes
Mariana Buongermino Pereira, Tobias Österlund, Karl Martin Eriksson, Thomas Backhaus, Marina Axelson-Fisk, Erik Kristiansson
BMC Genomics - 2020 -
MYO5B mutations in pheochromocytoma/paraganglioma promote cancer
progression
Tajana Tesan Tomic, Josefin Olausson, Anna Rehammar, Lily Deland, Andreas Muth, K. Ejeskar, Staffan Nilsson, Erik Kristiansson, Olof Nilsson Wassén, Frida Abel
Plos Genetics - 2020 -
When mycologists describe new species, not all relevant information is provided (clearly
enough).
Louisa Durkin, Tobias Jansson, Marisol Sanchez, Maryia Khomich, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
MycoKeys - 2020 -
The association between insertion sequences and antibiotic resistance
genes
Mohammad Razavi, Erik Kristiansson, Carl-Fredrik Flach, D. G. Joakim Larsson
mSphere - 2020 -
Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and
SHD-1.
Christopher Fröhlich, Vidar Sørum, Sandra Huber, Ørjan Samuelsen, Fanny Berglund, Erik Kristiansson, Stathis Kotsakis, Nachiket Marathe, D. G. Joakim Larsson, Hanna-Kirsti S Leiros
The Journal of antimicrobial chemotherapy - 2020 -
Cultivation-Free Typing of Bacteria Using Optical DNA
Mapping
Vilhelm Müller, M. Nyblom, Anna Johnning, M. Wrande, A. Dvirnas, K. K. Sriram, C. G. Giske, T. Ambjornsson, L. Sandegren, Erik Kristiansson, F. Westerlund
Acs Infectious Diseases - 2020 -
Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based
Proteotyping
Roger Karlsson, Annika Thorsell, M. Gomila, Francisco Salvà-Serra, Hedvig E Jakobsson, Lucia Gonzales-Siles, Daniel Jaén-Luchoro, Susann Skovbjerg, Johannes Fuchs, A. Karlsson, F. Boulund, Anna Johnning, Erik Kristiansson, Edward R.B. Moore
Molecular & Cellular Proteomics - 2020 -
Predicting clinical resistance prevalence using sewage metagenomic
data
Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology - 2020 -
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance
genes
Fanny Berglund, Maria-Elisabeth Böhm, Anton Martinsson, Stefan Ebmeyer, Tobias Österlund, Anna Johnning, D. G. Joakim Larsson, Erik Kristiansson
Microbial genomics - 2020 -
The mobile FOX AmpC beta-lactamases originated in Aeromonas
allosaccharophila
Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International Journal of Antimicrobial Agents - 2019 -
Patient-Tailored Deep Sequencing of Peripheral Blood Enables Early Detection of Relapse in Childhood Acute Myeloid
Leukemia
KL Juul-Dam, Erik Delsing Malmberg, Anna Rehammar, Erik Kristiansson, Jonas Abrahamsson, A Aggerholm, MM Dirdal, Kirsi Jahnukainen, Birgitte Lausen, HB Ommen, Henrik Hasle, Linda Fogelstrand
Blood Vpl 134 Suppl 1 1456 - 2019 -
Introducing ribosomal tandem repeat barcoding for
fungi
Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme, Silke Van den Wyngaert, Sten Svantesson, Erik Kristiansson, Maiko Kagami, R. Henrik Nilsson
Molecular Ecology Resources - 2019 -
mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated
Chemicals
Lars Förlin, Noomi Asker, Mats H. Töpel, Tobias Österlund, Erik Kristiansson, Jari Parkkonen, S. Faxneld, Joachim Sturve
Frontiers in Marine Science - 2019 -
Pharmacology beyond the patient - The environmental risks of human
drugs
L. Gunnarsson, J. R. Snapk, B. Verbruggen, S. F. Owen, Erik Kristiansson, L. Margiotta-Casaluci, Tobias Österlund, K. Hutchinson, D. Leverett, B. Marks, C. R. Tyler
Environment International - 2019 -
Identification and reconstruction of novel antibiotic resistance genes from
metagenomes
Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket Marathe, D. G. Joakim Larsson, Erik Kristiansson
Microbiome - 2019 -
177Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90
inhibition
Tobias Hofving, Viktor Sandblom, Yvonne Arvidsson, Emman Shubbar, Gülay Altiparmak, John Swanpalmer, Bilal Almobarak, Anna-Karin Elf, Viktor Johanson, Erik Elias, Erik Kristiansson, Eva Forssell-Aronsson, Ola Nilsson
Endocrine-Related Cancer - 2019
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