Mats Töpel
Om Mats Töpel
Forskningsområde/aktuella projekt Genomics and bioinformatics
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Improving the genome and proteome annotations of the marine model diatom Thalassiosira pseudonana using a proteogenomics
strategy
X. H. Chen, M. K. Yang, Y. Y. Li, Z. X. Xie, S. F. Zhang, Mats H. Töpel, S. A. Amin, L. Lin, F. Ge, D. Z. Wang
Marine Life Science & Technology - 2023 -
MSALigMap-A Tool for Mapping Active-Site Amino Acids in PDB Structures onto Known and Novel Unannotated Homologous Sequences with Similar
Function
Sameer Hassan, S. H. Sameer, Mats H. Töpel, Henrik Aronsson
Life-Basel - 2022 -
Recent and local diversification of Central American understorey
palms
A. Cano, F. W. Stauffer, Tobias Andermann, I. M. Liberal, A. Zizka, Christine D. Bacon, H. Lorenzi, C. Christe, Mats H. Töpel, M. Perret, Alexandre Antonelli
Global Ecology and Biogeography - 2022 -
Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity
cline
E. Pinseel, T. Nakov, K. Van den Berge, K. M. Downey, K. J. Judy, Olga Kourtchenko, A. Kremp, E. C. Ruck, C. Sjoqvist, Mats H. Töpel, Anna Godhe, A. J. Alverson
Isme Journal - 2022 -
Post-glacial establishment of locally adapted fish populations over a steep salinity
gradient
Erica H Leder, Carl André, Alan Le Moan, Mats H. Töpel, Anders Blomberg, Jonathan N. Havenhand, K. Lindstrom, Filip Volckaert, Charlotta Kvarnemo, Kerstin Johannesson, Ola Svensson
Journal of Evolutionary Biology - 2021 -
Ligand Binding Site Comparison - LiBiSCo - a web-based tool for analyzing interactions between proteins and ligands to explore amino acid specificity within active
sites
Sameer Hassan, Mats H. Töpel, Henrik Aronsson
Proteins-Structure Function and Bioinformatics - 2021 -
Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and
250+taxa
J. V. Schneider, T. Jungcurt, D. Cardoso, A. M. Amorim, Mats H. Töpel, Tobias Andermann, O. Poncy, T. Berberich, G. Zizka
Taxon - 2021 -
Combining an Ecological Experiment and a Genome Scan Show Idiosyncratic Responses to Salinity Stress in Local Populations of a
Seaweed
Alexandra Kinnby, Per R. Jonsson, Olga Ortega-Martínez, Mats H. Töpel, Henrik Pavia, Ricardo T. Pereyra, Kerstin Johannesson
Frontiers in Marine Science - 2020 -
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory
structure
J. Zrimec, C. S. Borlin, F. Buric, A. S. Muhammad, R. Chen, V. Siewers, V. Verendel, J. Nielsen, Mats H. Töpel, A. Zelezniak
Nature Communications - 2020 -
The round goby genome provides insights into mechanisms that may facilitate biological
invasions
I. Adrian-Kalchhauser, Anders Blomberg, Tomas Larsson, Z. Musilova, C. R. Peart, M. Pippel, M. H. Solbakken, J. Suurvali, J. C. Walser, J. Y. Wilson, Magnus Alm Rosenblad, D. Burguera, S. Gutnik, N. Michiels, Mats H. Töpel, K. Pankov, S. Schloissnig, S. Winkler
BMC Biology - 2020 -
Development and characterization of an EMS-mutagenized wheat population and identification of salt-tolerant wheat
lines
Johanna Lethin, S. S. M. Shakil, Sameer Hassan, N. Sirijovski, Mats H. Töpel, O. Olsson, Henrik Aronsson
Bmc Plant Biology - 2020 -
mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated
Chemicals
Lars Förlin, Noomi Asker, Mats H. Töpel, Tobias Österlund, Erik Kristiansson, Jari Parkkonen, S. Faxneld, Joachim Sturve
Frontiers in Marine Science - 2019 -
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved
Elements
Tobias Andermann, A. M. Fernandes, Urban Olsson, Mats H. Töpel, Bernard E. Pfeil, Bengt Oxelman, A. Aleixo, B. C. Faircloth, Alexandre Antonelli
Systematic Biology - 2019 -
Genome sequence of arenibacter algicola strain SMS7, found in association with the marine diatom skeletonema
marinoi
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Microbiology Resource Announcements - 2019 -
Ubiquitin-dependent chloroplast-associated protein degradation in
plants.
Qihua Ling, William Broad, Raphael Trösch, Mats H. Töpel, Tijen Demiral Sert, Panagiotis Lymperopoulos, Amy Baldwin, R Paul Jarvis
Science (New York, N.Y.) - 2019 -
Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema
marinoi.
Matthew I. M. Pinder, Oskar N. Johansson, Alvar Almstedt, Olga Kourtchenko, Adrian K Clarke, Anna Godhe, Mats H. Töpel
Journal of genomics - 2019 -
Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom
Host.
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Journal of Genomics - 2019 -
Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema
marinoi.
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Adrian K Clarke, Anna Godhe
Journal of Genomics - 2019 -
Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema
marinoi
Oskar N. Johansson, Matthew I. M. Pinder, Fredrik Ohlsson, Jenny Egardt, Mats H. Töpel, Adrian K Clarke
Frontiers in Microbiology - 2019 -
Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature
acclimation
Oskar N. Johansson, Mats H. Töpel, Jenny Egardt, Matthew I. M. Pinder, Mats X. Andersson, Anna Godhe, Adrian K Clarke
Scientific Reports - 2019 -
Exploring Molecular Signs of Sex in the Marine Diatom Skeletonema
marinoi
M. I. Ferrante, L. Entrambasaguas, Mathias Johansson, Mats H. Töpel, A. Kremp, M. Montresor, Anna Godhe
Genes - 2019 -
Complete Genome Sequence of the Diatom-Associated Bacterium Sphingorhabdus sp. Strain
SMR4y
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Microbiology Resource Announcements - 2019 -
Skeletonema marinoi as a new genetic model for marine chain-forming
diatoms
Oskar N. Johansson, Mats H. Töpel, Matthew I. M. Pinder, Olga Kourtchenko, Anders Blomberg, Anna Godhe, Adrian K Clarke
Scientific Reports - 2019 -
Whole-Genome Sequence of the Novel Antarctobacter heliothermus Strain SMS3, Found in Association with the Marine Diatom Skeletonema
marinoi.
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Journal of Genomics - 2018 -
Complete genome sequence of Loktanella vestfoldensis strain SMR4r, a novel strain isolated from a culture of the chain-forming diatom Skeletonema
marinoi
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Genome Announcements - 2018 -
SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and
Evolution.
Mats H. Töpel, Alexander Zizka, Maria Fernanda Calió, Ruud Scharn, Daniele Silvestro, Alexandre Antonelli
Systematic Biology - 2017 -
Genome sequence of Roseovarius mucosus strain SMR3, isolated from a culture of the diatom Skeletonema
marinoi
Mats H. Töpel, Matthew I. M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K Clarke
Genome Announcements - 2017 -
Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid
Biogenesis
J. Bedard, R. Trosch, F. J. Wu, Q. H. Ling, U. Flores-Perez, Mats H. Töpel, F. Nawaz, P. Jarvisa
Plant Cell - 2017 -
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of
Taxa.
Alexandre Antonelli, Hannes Hettling, Fabien L. Condamine, Karin Vos, R. Henrik Nilsson, Michael J Sanderson, Hervé Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Christine D. Bacon, Bengt Oxelman, Rutger A Vos
Systematic biology - 2017 -
Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg,
Sweden)
Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor R. M. Coimbra, Claudia Coleine, Claes G. R. Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats H. Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson
MycoKeys - 2016 -
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the
sea.
Jeanine L Olsen, Pierre Rouzé, Bram Verhelst, Yao-Cheng Lin, Till Bayer, Jonas Collen, Emanuela Dattolo, Emanuele De Paoli, Simon Dittami, Florian Maumus, Gurvan Michel, Anna Kersting, Chiara Lauritano, Rolf Lohaus, Mats H. Töpel, Thierry Tonon, Kevin Vanneste, Mojgan Amirebrahimi, Janina Brakel, Christoffer Boström, Mansi Chovatia, Jane Grimwood, Jerry W Jenkins, Alexander Jueterbock, Amy Mraz, Wytze T Stam, Hope Tice, Erich Bornberg-Bauer, Pamela J Green, Gareth A Pearson, Gabriele Procaccini, Carlos M Duarte, Jeremy Schmutz, Thorsten B H Reusch, Yves Van de Peer
Nature - 2016 -
Genetic and Physical Interaction Studies Reveal Functional Similarities between ALB3 and ALB4 in
Arabidopsis
Raphael Trösch, Mats H. Töpel, Úrsula Flores-Pérez, Paul Jarvis
Plant Physiology - 2015 -
Acylated monogalactosyl diacylglycerol: Prevalence in the plant kingdom and identification of an enzyme catalyzing galactolipid head group acylation in Arabidopsis
thaliana
Anders K. Nilsson, Oscar Johansson, Per Fahlberg, Murali Kommuri, Mats H. Töpel, Lovisa Bodin, Per Sikora, Masoomeh Modarres, Sophia K Ekengren, Nguyen Chi Tam, Edward E Farmer, Olof Olsson, Mats Ellerström, Mats X. Andersson
The Plant Journal - 2015 -
Characterization of ClpS2, an essential adaptor protein for the cyanobacterium Synechococcus
elongatus
Anders Tryggvesson, Frida Ståhlberg, Mats H. Töpel, Noriaki Tanabe, A. Mogk, Adrian K Clarke
Febs Letters - 2015 -
The Skeletonema marinoi genome
project
Mats H. Töpel, Sylvie V M Tesson, Magnus Alm Rosenblad, Tomas Larsson, Alvar Almstedt, Susanna Gross, Kerstin Johannesson, Anders Blomberg, Anna Godhe
EMBO: Molecular life of Diatoms. 7-10 July, Seattle, USA - 2015 -
Sibbaldia: a molecular phylogenetic study of a remarkably polyphyletic genus in
Rosaceae
T. Eriksson, M. Lundberg, Mats H. Töpel, P. Ostensson, J. E. E. Smedmark
Plant Systematics and Evolution - 2015 -
SUPERSMART: ecology and evolution in the era of big
data
Alexandre Antonelli, Fabien L. Condamine, Johannes Hettling, Karin Nilsson, R. Henrik Nilsson, Bengt Oxelman, Michael J Sanderson, Herve Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Rutger A Vos
PeerJ PrePrints - 2014 -
SpeciesGeoCoder: Fast categorisation of species occurrences for analyses of biodiversity, biogeography, ecology and
evolution.
Mats H. Töpel, Maria Fernanda Calió, Alexander Zizka, Ruud Scharn, Daniele Silvestro, Alexandre Antonelli
bioRxiv - 2014 -
Evolutionary, Molecular and Genetic Analyses of Tic22 Homologues in Arabidopsis thaliana
Chloroplasts
A. R. Kasmati, Mats H. Töpel, N. Z. Khan, R. Patel, Q. H. Ling, Sazzad Karim, Henrik Aronsson, P. Jarvis
Plos One - 2013 -
Neofunctionalization within the Omp85 protein superfamily during chloroplast
evolution
Mats H. Töpel, Qihua Ling, Paul Jarvis
Plant Signaling and Behaviour - 2012 -
Past climate change and plant evolution in western North America: a case study in
Rosaceae
Mats H. Töpel, Alexandre Antonelli, Chris Yesson, Bente Eriksen
PLoS ONE - 2012 -
First Dating of a Recombination Event in Mammalian Tick-borne
Flaviviruses
Yann Bertrand, Mats H. Töpel, A. Elväng, W. Melik, M. Johansson
PLoS ONE - 2012 -
Molecular data and ploidal levels indicate several putative allopolyploidization events in the genus Potentilla
(Rosaceae)
Mats H. Töpel, Bente Eriksen, Torsten Eriksson, Magnus Lundberg
PLOS Currents: Tree of Life - 2011 -
The Tic20 gene family: phylogenetic analysis and evolutionary
considerations
Mats H. Töpel, Paul Jarvis
Plant Signaling & Behavior - 2011 -
Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana
chloroplasts
Ali Reza Kasmati, Mats H. Töpel, Ramesh Patel, Ghulam Murtaza, Paul Jarvis
Plant Journal - 2011 -
Phylogenetic and phyloclimatic inference of the evolution of Potentilleae
(Rosaseae)
Mats H. Töpel
2010 -
Allopolyploidy in Fragariinae (Rosaceae): Comparing four DNA sequence regions, with comments on
classification
Magnus Lundberg, Mats H. Töpel, Bente Eriksen, Johan Nylander, Torsten Eriksson
Molecular phylogenetics and evolution - 2009 -
Genetic and niche analysis of Alnus viridis (Betulaceae) provide evidence for mutiple refugia in
Beringia
Bente Eriksen, Mats H. Töpel, Lars Jernström, Chris Yesson
Botany & Mycology 2009 - 2009 -
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe
(Basidiomycota)
Martin Ryberg, R. Henrik Nilsson, Erik Kristiansson, Mats H. Töpel, Stig Jacobsson, Ellen Larsson
BMC Evolutionary Biology - 2008 -
Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis
thaliana
Henrik Aronsson, Patrik Boij, R. Patel, A. Wardle, Mats H. Töpel, P. Jarvis
Plant Journal - 2007 -
Molecular phylogeography and hybridization in members of the circumpolar Potentilla sect. Niveae
(Rosaceae)
Bente Eriksen, Mats H. Töpel
American Journal of Botany - 2006