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Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

Artikel i vetenskaplig tidskrift
Författare Aleksandra Checinska
Alexander J. Probst
Parag Vaishampayan
James R. White
Deepika Kumar
Victor G. Stepanov
George E. Fox
R. Henrik Nilsson
Duane L. Pierson
Jay Perry
Kasthuri Venkateswaran
Publicerad i Microbiome
Volym 3
Sidor Article Number: 50
ISSN 2049-2618
Publiceringsår 2015
Publicerad vid Institutionen för biologi och miljövetenskap
Sidor Article Number: 50
Språk en
Länkar dx.doi.org/10.1186/s40168-015-0116-...
Ämnesord International Space Station; Air; Surface; Microbiome; Closed habitat; Cleanroom; Propidium monoazide
Ämneskategorier Bebyggelsevård, Databaser, Bioinformatik (beräkningsbiologi), Astronomi, astrofysik och kosmologi, Mikrobiologi, Botanik, Bioinformatik och systembiologi, Biologisk systematik, Byggproduktion, Annan miljöbioteknik, Bakteriologi, Medicinsk mikrobiologi

Sammanfattning

Background - The International Space Station (ISS) is a unique built environment due to the effects of microgravity, space radiation, elevated carbon dioxide levels, and especially continuous human habitation. Understanding the composition of the ISS microbial community will facilitate further development of safety and maintenance practices. The primary goal of this study was to characterize the viable microbiome of the ISS-built environment. A second objective was to determine if the built environments of Earth-based cleanrooms associated with space exploration are an appropriate model of the ISS environment. Results - Samples collected from the ISS and two cleanrooms at the Jet Propulsion Laboratory (JPL, Pasadena, CA) were analyzed by traditional cultivation, adenosine triphosphate (ATP), and propidium monoazide–quantitative polymerase chain reaction (PMA-qPCR) assays to estimate viable microbial populations. The 16S rRNA gene Illumina iTag sequencing was used to elucidate microbial diversity and explore differences between ISS and cleanroom microbiomes. Statistical analyses showed that members of the phyla Actinobacteria, Firmicutes, and Proteobacteria were dominant in the samples examined but varied in abundance. Actinobacteria were predominant in the ISS samples whereas Proteobacteria, least abundant in the ISS, dominated in the cleanroom samples. The viable bacterial populations seen by PMA treatment were greatly decreased. However, the treatment did not appear to have an effect on the bacterial composition (diversity) associated with each sampling site. Conclusions - The results of this study provide strong evidence that specific human skin-associated microorganisms make a substantial contribution to the ISS microbiome, which is not the case in Earth-based cleanrooms. For example, Corynebacterium and Propionibacterium (Actinobacteria) but not Staphylococcus (Firmicutes) species are dominant on the ISS in terms of viable and total bacterial community composition. The results obtained will facilitate future studies to determine how stable the ISS environment is over time. The present results also demonstrate the value of measuring viable cell diversity and population size at any sampling site. This information can be used to identify sites that can be targeted for more stringent cleaning. Finally, the results will allow comparisons with other built sites and facilitate future improvements on the ISS that will ensure astronaut health.

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