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Whole-Genome Sequence of the Novel Antarctobacter heliothermus Strain SMS3, Found in Association with the Marine Diatom Skeletonema marinoi.

Journal article
Authors Mats H. Töpel
Matthew I. M. Pinder
Oskar N. Johansson
Olga Kourtchenko
Anna Godhe
Adrian K Clarke
Published in Journal of Genomics
Volume 6
Pages 113-116
ISSN 1839-9940
Publication year 2018
Published at Department of marine sciences
Department of Biological and Environmental Sciences
Pages 113-116
Language en
Links dx.doi.org/10.7150/jgen.27637
www.ncbi.nlm.nih.gov/entrez/query.f...
Keywords Antarctobacter; Diatom; Microbiome; Skeletonema; Whole Genome Sequencing
Subject categories Bioinformatics and Systems Biology

Abstract

As part of an ongoing investigation into the microbiome of the marine diatom Skeletonema marinoi, the bacterial strain SMS3 was isolated from a culture of S. marinoi strain ST54, which had been propagated from a sample of top layer marine sediments taken from the Swedish west coast. We present here the sequenced genome of this bacterium, which we place in the taxon Antarctobacter heliothermus, based on a phylotaxonomic analysis and its high 16S rRNA sequence similarity to the A. heliothermus type strain DSM 11445T. Its 5,331,190 bp genome consists of a circular chromosome and three circular plasmids, and contains 5,019 CDSs. Strain SMS3 contains a phosphatidylcholine synthase gene, as well as genes involved in DMSP degradation, both of which imply a potential symbiotic relationship with its host.

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