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Philip Gerlee
Assistant Professor
Applied Mathematics andAbout Philip Gerlee
My main research interest is mathematical biology, in particular cancer modelling. I am also interested in mathematical aspects of evolution and ecology, such as the evolution of bacterial consortia and applications of game theory to biology.
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Model uncertainty, the COVID-19 pandemic, and the science-policy
interface
Henrik Thoren, Philip Gerlee
ROYAL SOCIETY OPEN SCIENCE - 2024 -
Turing pattern formation on the sphere is robust to the removal of a
hole
Johannes G. Borgqvist, Philip Gerlee, Carl Lundholm
JOURNAL OF MATHEMATICAL BIOLOGY - 2024 -
Fast and precise inference on diffusivity in interacting particle
systems
Gustav Lindwall, Philip Gerlee
Journal of Mathematical Biology - 2023 -
Bayesian inference on the Allee effect in cancer cell line populations using time-lapse microscopy
images
Gustav Lindwall, Philip Gerlee
Journal of Theoretical Biology - 2023 -
Derivation of a Generalised Replicator Equation in the Limit of Weak
Selection
Philip Gerlee
Springer Proceedings in Mathematics and Statistics - 2023 -
Inference of glioblastoma migration and proliferation rates using single time-point
images
E. Rosen, H. B. Mangukiya, L. Elfineh, R. Stockgard, C. Krona, Philip Gerlee, S. Nelander
Communications Biology - 2023 -
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer
systems
S. Hamis, P. Somervuo, J. A. Agren, D. S. Tadele, J. Kesseli, J. G. Scott, M. Nykter, Philip Gerlee, D. Finkelshtein, O. Ovaskainen
Journal of Mathematical Biology - 2023 -
Nowcasting (Short-Term Forecasting) of COVID-19 Hospitalizations Using Syndromic Healthcare Data, Sweden,
2020
A. Spreco, A. Jöud, O. Eriksson, K. Soltesz, R. Källström, Ö Dahlström, H. Eriksson, J. Ekberg, C. O. Jonson, C. J. Fraenkel, Torbjörn Lundh, Philip Gerlee, F. Gustafsson, T. Timpka
Emerging Infectious Diseases - 2022 -
Autocrine signaling can explain the emergence of Allee effects in cancer cell
populations
Philip Gerlee, P. M. Altrock, A. Malik, C. Krona, S. Nelander
Plos Computational Biology - 2022 -
Ladderpath Approach: How Tinkering and Reuse Increase Complexity and
Information
Y. Liu, Z. R. Di, Philip Gerlee
Entropy - 2022 -
Computational models predicting the early development of the COVID-19 pandemic in Sweden: systematic review, data synthesis, and secondary validation of
accuracy
Philip Gerlee, A. Joud, A. Spreco, T. Timpka
Scientific Reports - 2022 -
Weak Selection and the Separation of Eco-evo Time Scales using Perturbation
Analysis
Philip Gerlee
Bulletin of Mathematical Biology - 2022 -
Estimating the SARS-CoV-2 infected population fraction and the infection-to-fatality ratio: a data-driven case study based on Swedish time series
data.
Andreas Wacker, Anna Jöud, Bo Bernhardsson, Philip Gerlee, Fredrik Gustafsson, Kristian Soltesz
Scientific reports - 2021 -
Cell polarisation in a bulk-surface model can be driven by both classic and non-classic Turing
instability
Johannes Borgqvist, Adam A. Malik, Carl Lundholm, Anders Logg, Philip Gerlee, Marija Cvijovic
Npj Systems Biology and Applications - 2021 -
The Impact of Elastic Deformations of the Extracellular Matrix on Cell
Migration
Adam A. Malik, Bernt Wennberg, Philip Gerlee
Bulletin of Mathematical Biology - 2020 -
Persistence of cooperation in diffusive public goods
games
Philip Gerlee, P. M. Altrock
Physical Review E - 2019 -
Neighborhood size-effects shape growing population dynamics in evolutionary public goods
games
G. J. Kimmel, Philip Gerlee, J. S. Brown, P. M. Altrock
Communications Biology - 2019 -
Mathematical modelling of cell migration: stiffness dependent jump rates result in
durotaxis
Adam A. Malik, Philip Gerlee
Journal of Mathematical Biology - 2019 -
Inferring rates of metastatic dissemination using stochastic network
models
Philip Gerlee, Mia Johansson
Plos Computational Biology - 2019 -
Time scales and wave formation in non-linear spatial public goods
games
G. J. Kimmel, Philip Gerlee, P. M. Altrock
PLoS Computational Biology - 2019 -
Impact of anticipation in dynamical
systems
Philip Gerlee, K. Tunstrom, Torbjörn Lundh, Bernt Wennberg
Physical Review E - 2017 -
Extinction rates in tumour public goods
games
Philip Gerlee, P. M. Altrock
Journal of the Royal Society Interface - 2017 -
The Influence of Cellular Characteristics on the Evolution of Shape
Homeostasis
Philip Gerlee, David Basanta, Alexander R.A. Anderson
Artificial Life - 2017 -
Scientific
Models
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Estimating the probability of coexistence in cross-feeding
communities
Björn Vessman, Philip Gerlee, Torbjörn Lundh
Journal of Theoretical Biology - 2016 -
Travelling wave analysis of a mathematical model of glioblastoma
growth
Philip Gerlee, Sven Nelander
Mathematical Biosciences - 2016 -
The evolution of carrying capacity in constrained and expanding tumour cell
populations
Philip Gerlee, A. R. A. Anderson
Physical Biology - 2015 -
Complexity and stability in growing cancer cell
populations
Philip Gerlee, P. M. Altrock
Proceedings of the National Academy of Sciences of the United States of America - 2015 -
A filter-flow perspective of haematogenous metastasis offers a non-genetic paradigm for personalised cancer
therapy
Jacob G Scott, Alexander G Fletcher, Philip K Maini, Alexander R.A. Anderson, Philip Gerlee
European Journal of Cancer - 2014 -
Comparative drug pair screening across multiple glioblastoma cell lines reveals novel drug-drug
interactions
L. Schmidt, T. Kling, N. Monsefi, M. Olsson, C. Hansson, S. Baskaran, B. Lundgren, U. Martens, M. Haggblad, B. Westermark, K. F. Nilsson, L. Uhrbom, L. Karlsson-Lindahl, Philip Gerlee, S. Nelander
Neuro-Oncology - 2013 -
Searching for Synergies: Matrix Algebraic Approaches for Efficient Pair
Screening
Philip Gerlee, Linnéa Schmidt, Naser Monsefi, Teresia Kling, Rebecka Jörnsten, Sven Nelander
PLoS ONE - 2013 -
Cross-Feeding Dynamics Described by a Series Expansion of the Replicator
Equation
Torbjörn Lundh, Philip Gerlee
Bulletin of Mathematical Biology - 2013 -
The Model Muddle: In Search of Tumor Growth
Laws
Philip Gerlee
Cancer Research - 2013 -
A mathematical model of tumour self-seeding reveals secondary metastatic deposits as drivers of primary tumour
growth
J. G. Scott, D. Basanta, A. R. A. Anderson, Philip Gerlee
Journal of the Royal Society Interface - 2013 -
Mathematical modeling of the metastatic
process
J.G. Scott, Philip Gerlee, D. Basanta, A.G. Fletcher, P.K. Maini, A.R.A. Anderson
Experimental Metastasis: Modeling and Analysis - 2013 -
The Impact of Phenotypic Switching on Glioblastoma Growth and
Invasion
Philip Gerlee, Sven Nelander
PLoS Computational Biology - 2012 -
Effect of space in the game “war of
attrition”
Philip Gerlee, Torbjörn Lundh
Physical Review E - 2012 -
Vetenskapliga
modeller
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Evolving homeostatic tissue using genetic
algorithms
Philip Gerlee, D. Basanta, A. R. A. Anderson
Progress in Biophysics & Molecular Biology - 2011 -
Structural correlations in bacterial metabolic
networks
Sebastian Bernhardsson, Philip Gerlee, Ludvig Lizana
BMC Evolutionary Biology - 2011 -
Evolving Homeostatic Tissue Using Genetic
Algorithms
Philip Gerlee, David Basanta, Alexander R.A. Anderson
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems - 2010 -
Diffusion-limited tumour growth: Simulations and
analysis.
Philip Gerlee, Alexander R.A. Anderson
Mathematical biosciences and engineering - 2010 -
Evolution, regulation and disruption of homeostasis and its role in
carcinogenesis
Alexander R.A. Anderson, David Basanta, Philip Gerlee, Kasia Rejniak
Multiscale Cancer Modeling - 2010 -
Rock-scissor-paper dynamics in a digital
ecology
Philip Gerlee, Torbjörn Lundh
12th International Conference on the Synthesis and Simulation of Living Systems: Artificial Life XII, ALIFE 2010; Odense; Denmark; 19 August 2010 through 23 August 2010 - 2010 -
Productivity and diversity in a cross-feeding population of digital
organisms
Philip Gerlee, Torbjörn Lundh
Evolution - 2010 -
Weak Emergence and
Complexity
Henrik Thorén, Philip Gerlee
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems - 2010 -
Gene divergence and pathway duplication in the metabolic network of yeast and digital
organisms
Philip Gerlee, Torbjörn Lundh, B. Zhang, A.R.A. Anderson
Journal of the Royal Society Interface - 2009 -
The Emergence of Overlapping Scale-free Genetic Architecture
in
Philip Gerlee, Torbjörn Lundh
Artificial Life - 2008 -
The Genetic coding style of digital
organisms
Philip Gerlee, Torbjörn Lundh
Lecture Notes in Computer Science - Advances in Artificial Life, Sept. 2005, Canterbury, UK, M.S. Capcarrere et al. - 2005