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The complete mitochondrial genome of the copepod Calanus glacialis

Journal article
Authors Marvin Choquet
Homére J. Alves Monteiro
Johan Bengtsson-Palme
Galice Hoarau
Published in Mitochondrial DNA Part B
Volume 2
Issue 2
Pages 506-507
ISSN 2380-2359
Publication year 2017
Published at Institute of Biomedicine, Department of Infectious Medicine
Pages 506-507
Language en
Links https://doi.org/10.1080/23802359.20...
www.tandfonline.com/doi/pdf/10.1080...
Keywords Calanus glacialis, copepod, mitochondrion, mitogenome, zooplankton
Subject categories Marine ecology, Functional genomics

Abstract

Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq® Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674 bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to reconstruct a phylogenetic tree, using mitogenomes of the phylogenetically closest copepods available. The new resource described here constitutes a tool of interest for better understanding the structure and dynamics of C. glacialis populations.

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