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FARAO: the flexible all-round annotation organizer

Journal article
Authors Rickard Hammarén
Chandan Pal
Johan Bengtsson-Palme
Published in Bioinformatics
Volume 32
Issue 23
Pages 3664-3666
ISSN 1367-4803
Publication year 2016
Published at Centre for antibiotic resistance research, CARe
Institute of Biomedicine, Department of Infectious Medicine
Pages 3664-3666
Language en
Links dx.doi.org/10.1093/bioinformatics/b...
Keywords Annotation, Genomics, Metagenomics, Visualization
Subject categories Functional genomics, Bioinformatics and Systems Biology, Bioinformatics (Computational Biology)

Abstract

Summary: With decreasing costs of generating DNA sequence data, genome and metagenome projects have become accessible to a wider scientific community. However, to extract meaningful information and visualize the data remain challenging. We here introduce FARAO, a highly scalable software for organization, visualization and integration of annotation and read coverage data that can also combine output data from several bioinformatics tools. The capabilities of FARAO can greatly aid analyses of genomic and metagenomic datasets. Availability and Implementation: FARAO is implemented in Perl and is supported under Unix-like operative systems, including Linux and macOS. The Perl source code is freely available for download under the MIT License from http://microbiology.se/software/farao/.

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